HEADER DNA 03-MAY-06 2GW0 TITLE A D(TGGGGT)- SODIUM AND CALCIUM COMPLEX. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*TP*GP*GP*GP*GP*T)-3'; COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: TETRAHYMENA TELOMERIC SEQUENCE. KEYWDS DNA, QUADRUPLEX, G-QUADRUPLEX, TETRAPLEX, G-TETRAPLEX, QUADRUPLE KEYWDS 2 HELIX, PARALLEL-STRANDED, D(TGGGGT), HYDRATED CALCIUM ION, CALCIUM, KEYWDS 3 CALCIUM ION, SODIUM, SODIUM ION. EXPDTA X-RAY DIFFRACTION AUTHOR M.P.H.LEE,G.N.PARKINSON,S.NEIDLE REVDAT 6 30-AUG-23 2GW0 1 REMARK LINK REVDAT 5 24-JUL-19 2GW0 1 REMARK REVDAT 4 18-OCT-17 2GW0 1 REMARK REVDAT 3 24-FEB-09 2GW0 1 VERSN REVDAT 2 23-SEP-08 2GW0 1 JRNL REVDAT 1 15-MAY-07 2GW0 0 JRNL AUTH M.P.LEE,G.N.PARKINSON,P.HAZEL,S.NEIDLE JRNL TITL OBSERVATION OF THE COEXISTENCE OF SODIUM AND CALCIUM IONS IN JRNL TITL 2 A DNA G-QUADRUPLEX ION CHANNEL. JRNL REF J.AM.CHEM.SOC. V. 129 10106 2007 JRNL REFN ISSN 0002-7863 JRNL PMID 17661470 JRNL DOI 10.1021/JA0740869 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 4.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.176 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.174 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 10.008 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 1234 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 12330 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.165 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.163 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 9.846 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 1120 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 11375 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 968 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 191 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 1171.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 0.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 0 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 4727 REMARK 3 NUMBER OF RESTRAINTS : 4774 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 ANGLE DISTANCES (A) : 0.028 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.013 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.000 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.008 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.019 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.002 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.051 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228 REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GW0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037616. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-03 REMARK 200 TEMPERATURE (KELVIN) : 117.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : OSMIC FOCUSING MIRROR SYSTEM REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12464 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.1 REMARK 200 DATA REDUNDANCY : 2.850 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.620 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: THE FIRST QUADRUPLEX MOLECULE OF NDB ENTRY CODE REMARK 200 UDF062 OR PDB ENTRY CODE 352D WITH THYMINES REMOVED. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 24.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CALCIUM CHLORIDE, DNA, DISTAMYCIN A, REMARK 280 SODIUM CHLORIDE, MPD, SPERMINE TETRAHYDROCHLORIDE, SODIUM REMARK 280 CACODYLATE BUFFER, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K, PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT C 18 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DT C 18 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT C 18 C7 C6 REMARK 470 DT G 42 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DT G 42 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT G 42 C7 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 82 O HOH D 81 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 2 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DG A 4 O4' - C1' - N9 ANGL. DEV. = -7.5 DEGREES REMARK 500 DT A 6 O4' - C4' - C3' ANGL. DEV. = -3.3 DEGREES REMARK 500 DT B 7 O4' - C1' - N1 ANGL. DEV. = -4.5 DEGREES REMARK 500 DG B 10 O4' - C1' - N9 ANGL. DEV. = -7.0 DEGREES REMARK 500 DT B 12 O4' - C1' - N1 ANGL. DEV. = -5.3 DEGREES REMARK 500 DT C 13 C3' - C2' - C1' ANGL. DEV. = -5.9 DEGREES REMARK 500 DG C 14 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG C 16 O4' - C1' - N9 ANGL. DEV. = -5.9 DEGREES REMARK 500 DT D 19 C3' - O3' - P ANGL. DEV. = 9.4 DEGREES REMARK 500 DG D 22 O4' - C1' - N9 ANGL. DEV. = -5.3 DEGREES REMARK 500 DT E 30 N1 - C1' - C2' ANGL. DEV. = 10.1 DEGREES REMARK 500 DT E 30 O4' - C1' - N1 ANGL. DEV. = -10.5 DEGREES REMARK 500 DG F 32 C6 - N1 - C2 ANGL. DEV. = -3.8 DEGREES REMARK 500 DG F 32 C2 - N3 - C4 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG F 32 N3 - C4 - C5 ANGL. DEV. = -4.2 DEGREES REMARK 500 DG F 34 O4' - C1' - N9 ANGL. DEV. = -7.6 DEGREES REMARK 500 DT G 37 O4' - C1' - N1 ANGL. DEV. = -5.2 DEGREES REMARK 500 DG G 41 O4' - C1' - N9 ANGL. DEV. = -4.7 DEGREES REMARK 500 DT H 43 O4' - C1' - N1 ANGL. DEV. = -5.4 DEGREES REMARK 500 DG H 46 N9 - C1' - C2' ANGL. DEV. = 8.8 DEGREES REMARK 500 DG H 46 O4' - C1' - N9 ANGL. DEV. = -8.3 DEGREES REMARK 500 DT H 48 O4' - C4' - C3' ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 54 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 2 O6 REMARK 620 2 DG A 3 O6 78.7 REMARK 620 3 DG B 8 O6 65.1 133.6 REMARK 620 4 DG B 9 O6 89.9 72.2 79.4 REMARK 620 5 DG C 14 O6 97.7 152.5 64.7 135.3 REMARK 620 6 DG C 15 O6 154.9 115.1 91.7 75.8 79.3 REMARK 620 7 DG D 20 O6 64.2 89.8 98.8 151.3 64.7 132.8 REMARK 620 8 DG D 21 O6 130.6 70.7 155.7 115.2 92.6 74.6 77.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 55 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 2 O6 REMARK 620 2 DG B 8 O6 69.9 REMARK 620 3 DG C 14 O6 111.2 71.4 REMARK 620 4 DG D 20 O6 69.2 107.7 71.6 REMARK 620 5 DG E 26 O6 72.0 117.2 171.3 102.9 REMARK 620 6 DG F 32 O6 114.2 175.7 105.4 73.5 66.2 REMARK 620 7 NA F 50 NA 122.1 127.0 126.7 125.1 50.6 52.4 REMARK 620 8 DG G 38 O6 172.0 106.5 73.4 118.8 104.4 69.5 53.8 REMARK 620 9 DG H 44 O6 102.7 73.8 117.7 170.0 68.3 105.8 53.4 69.3 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 53 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 3 O6 REMARK 620 2 DG A 4 O6 78.5 REMARK 620 3 DG B 9 O6 61.0 129.8 REMARK 620 4 DG B 10 O6 90.1 76.7 75.2 REMARK 620 5 DG C 15 O6 93.1 154.3 61.7 128.0 REMARK 620 6 DG C 16 O6 150.9 123.1 90.2 77.9 74.6 REMARK 620 7 DG D 21 O6 61.4 92.6 92.5 151.2 62.4 128.9 REMARK 620 8 DG D 22 O6 126.9 76.2 152.0 127.2 90.4 80.3 74.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 49 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 5 O6 REMARK 620 2 DG B 11 O6 89.4 REMARK 620 3 HOH B 61 O 86.2 83.2 REMARK 620 4 DG C 17 O6 175.1 89.1 88.9 REMARK 620 5 DG D 23 O6 90.4 179.8 96.7 91.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 59 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 83 O REMARK 620 2 HOH A 88 O 77.3 REMARK 620 3 HOH D 84 O 78.5 97.1 REMARK 620 4 HOH D 85 O 140.8 81.0 72.2 REMARK 620 5 HOH D 87 O 74.7 113.9 132.6 144.4 REMARK 620 6 HOH F 86 O 130.1 79.8 148.4 76.3 75.2 REMARK 620 7 DT G 37 O2 109.0 169.7 76.8 89.2 76.0 101.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 60 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 90 O REMARK 620 2 HOH A 91 O 76.0 REMARK 620 3 HOH A 93 O 139.6 76.0 REMARK 620 4 HOH A 95 O 78.3 103.5 80.7 REMARK 620 5 HOH B 89 O 71.9 120.4 148.3 117.0 REMARK 620 6 HOH B 92 O 124.3 81.2 78.9 157.2 77.5 REMARK 620 7 HOH B 94 O 132.1 151.1 76.4 80.2 80.9 85.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 56 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 63 O REMARK 620 2 HOH A 64 O 76.2 REMARK 620 3 HOH A 67 O 77.9 140.9 REMARK 620 4 HOH A 191 O 86.1 78.6 70.9 REMARK 620 5 HOH B 68 O 79.4 110.3 93.0 160.3 REMARK 620 6 HOH E 65 O 130.5 72.9 145.1 123.3 76.4 REMARK 620 7 HOH E 66 O 151.6 131.2 74.7 91.9 94.7 73.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 57 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 69 O REMARK 620 2 HOH B 70 O 76.7 REMARK 620 3 HOH B 71 O 143.9 74.0 REMARK 620 4 HOH B 73 O 74.2 134.8 141.8 REMARK 620 5 HOH C 74 O 77.4 96.9 85.6 109.5 REMARK 620 6 DT E 25 O2 101.1 79.9 94.1 72.8 176.7 REMARK 620 7 HOH H 72 O 125.0 154.2 80.5 69.8 77.2 106.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 58 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 78 O REMARK 620 2 HOH C 79 O 85.6 REMARK 620 3 HOH C 82 O 68.3 84.0 REMARK 620 4 HOH D 75 O 145.6 111.1 140.6 REMARK 620 5 HOH D 77 O 80.7 153.7 111.1 71.4 REMARK 620 6 HOH D 80 O 140.2 75.0 75.2 74.2 128.7 REMARK 620 7 HOH D 81 O 87.2 135.6 52.9 99.1 66.2 83.3 REMARK 620 8 HOH G 76 O 80.0 71.6 141.3 77.5 83.9 123.9 149.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA F 50 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG E 26 O6 REMARK 620 2 DG E 27 O6 75.3 REMARK 620 3 DG F 32 O6 68.4 136.8 REMARK 620 4 DG F 33 O6 87.1 76.3 79.1 REMARK 620 5 DG G 38 O6 108.5 146.5 70.0 136.2 REMARK 620 6 DG G 39 O6 149.1 121.4 84.0 73.8 72.8 REMARK 620 7 DG H 44 O6 70.8 80.8 107.5 151.6 69.9 133.6 REMARK 620 8 DG H 45 O6 135.4 74.2 149.0 115.8 81.8 75.4 72.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA E 51 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG E 28 O6 REMARK 620 2 DG F 33 O6 122.3 REMARK 620 3 DG F 34 O6 78.2 74.3 REMARK 620 4 DG G 40 O6 134.3 87.8 78.6 REMARK 620 5 DG H 46 O6 81.3 153.0 127.5 82.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA E 52 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG E 29 O6 REMARK 620 2 HOH E 62 O 84.8 REMARK 620 3 DG F 35 O6 87.5 89.9 REMARK 620 4 DG G 41 O6 179.5 94.8 92.8 REMARK 620 5 DG H 47 O6 92.7 85.5 175.3 87.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 49 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA F 50 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA E 51 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA E 52 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 53 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 54 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 55 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 56 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 57 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 58 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 59 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 60 DBREF 2GW0 A 1 6 PDB 2GW0 2GW0 1 6 DBREF 2GW0 B 7 12 PDB 2GW0 2GW0 7 12 DBREF 2GW0 C 13 18 PDB 2GW0 2GW0 13 18 DBREF 2GW0 D 19 24 PDB 2GW0 2GW0 19 24 DBREF 2GW0 E 25 30 PDB 2GW0 2GW0 25 30 DBREF 2GW0 F 31 36 PDB 2GW0 2GW0 31 36 DBREF 2GW0 G 37 42 PDB 2GW0 2GW0 37 42 DBREF 2GW0 H 43 48 PDB 2GW0 2GW0 43 48 SEQRES 1 A 6 DT DG DG DG DG DT SEQRES 1 B 6 DT DG DG DG DG DT SEQRES 1 C 6 DT DG DG DG DG DT SEQRES 1 D 6 DT DG DG DG DG DT SEQRES 1 E 6 DT DG DG DG DG DT SEQRES 1 F 6 DT DG DG DG DG DT SEQRES 1 G 6 DT DG DG DG DG DT SEQRES 1 H 6 DT DG DG DG DG DT HET NA A 49 1 HET CA A 54 1 HET CA A 55 1 HET CA A 59 1 HET CA A 60 1 HET CA B 56 1 HET CA B 57 1 HET CA D 53 1 HET CA D 58 1 HET NA E 51 1 HET NA E 52 1 HET NA F 50 1 HETNAM NA SODIUM ION HETNAM CA CALCIUM ION FORMUL 9 NA 4(NA 1+) FORMUL 10 CA 8(CA 2+) FORMUL 21 HOH *191(H2 O) LINK O6 DG A 2 CA CA A 54 1555 1555 3.00 LINK O6 DG A 2 CA CA A 55 1555 1555 2.80 LINK O6 DG A 3 CA CA A 54 1555 1555 2.69 LINK O6 DG A 3 CA CA D 53 1555 1555 3.03 LINK O6 DG A 4 CA CA D 53 1555 1555 2.59 LINK O6 DG A 5 NA NA A 49 1555 1555 2.35 LINK NA NA A 49 O6 DG B 11 1555 1555 2.30 LINK NA NA A 49 O HOH B 61 1555 1555 2.47 LINK NA NA A 49 O6 DG C 17 1555 1555 2.35 LINK NA NA A 49 O6 DG D 23 1555 1555 2.28 LINK CA CA A 54 O6 DG B 8 1555 1555 2.87 LINK CA CA A 54 O6 DG B 9 1555 1555 2.61 LINK CA CA A 54 O6 DG C 14 1555 1555 2.93 LINK CA CA A 54 O6 DG C 15 1555 1555 2.69 LINK CA CA A 54 O6 DG D 20 1555 1555 2.90 LINK CA CA A 54 O6 DG D 21 1555 1555 2.74 LINK CA CA A 55 O6 DG B 8 1555 1555 2.71 LINK CA CA A 55 O6 DG C 14 1555 1555 2.61 LINK CA CA A 55 O6 DG D 20 1555 1555 2.72 LINK CA CA A 55 O6 DG E 26 1555 1555 2.79 LINK CA CA A 55 O6 DG F 32 1555 1555 2.75 LINK CA CA A 55 NA NA F 50 1555 1555 3.32 LINK CA CA A 55 O6 DG G 38 1555 1555 2.83 LINK CA CA A 55 O6 DG H 44 1555 1555 2.84 LINK CA CA A 59 O HOH A 83 1555 1555 2.49 LINK CA CA A 59 O HOH A 88 1555 1555 2.30 LINK CA CA A 59 O HOH D 84 1555 1555 2.34 LINK CA CA A 59 O HOH D 85 1555 1555 2.49 LINK CA CA A 59 O HOH D 87 1555 1555 2.37 LINK CA CA A 59 O HOH F 86 1555 1555 2.48 LINK CA CA A 59 O2 DT G 37 1555 1455 2.38 LINK CA CA A 60 O HOH A 90 1555 1555 2.39 LINK CA CA A 60 O HOH A 91 1555 1555 2.41 LINK CA CA A 60 O HOH A 93 1555 1555 2.42 LINK CA CA A 60 O HOH A 95 1555 1555 2.34 LINK CA CA A 60 O HOH B 89 1555 1555 2.46 LINK CA CA A 60 O HOH B 92 1555 1555 2.38 LINK CA CA A 60 O HOH B 94 1555 1555 2.34 LINK O HOH A 63 CA CA B 56 1555 1555 2.50 LINK O HOH A 64 CA CA B 56 1555 1555 2.46 LINK O HOH A 67 CA CA B 56 1555 1555 2.39 LINK O HOH A 191 CA CA B 56 1555 1555 2.47 LINK O6 DG B 9 CA CA D 53 1555 1555 3.13 LINK O6 DG B 10 CA CA D 53 1555 1555 2.57 LINK CA CA B 56 O HOH B 68 1555 1555 2.40 LINK CA CA B 56 O HOH E 65 1555 1555 2.44 LINK CA CA B 56 O HOH E 66 1555 1555 2.55 LINK CA CA B 57 O HOH B 69 1555 1555 2.55 LINK CA CA B 57 O HOH B 70 1555 1555 2.44 LINK CA CA B 57 O HOH B 71 1555 1555 2.46 LINK CA CA B 57 O HOH B 73 1555 1555 2.44 LINK CA CA B 57 O HOH C 74 1555 1555 2.39 LINK CA CA B 57 O2 DT E 25 1555 1655 2.46 LINK CA CA B 57 O HOH H 72 1555 1555 2.54 LINK O6 DG C 15 CA CA D 53 1555 1555 3.22 LINK O6 DG C 16 CA CA D 53 1555 1555 2.50 LINK O HOH C 78 CA CA D 58 1555 1555 2.36 LINK O HOH C 79 CA CA D 58 1555 1555 2.57 LINK O HOH C 82 CA CA D 58 1555 1555 2.29 LINK O6 DG D 21 CA CA D 53 1555 1555 3.12 LINK O6 DG D 22 CA CA D 53 1555 1555 2.47 LINK CA CA D 58 O HOH D 75 1555 1555 2.38 LINK CA CA D 58 O HOH D 77 1555 1555 2.46 LINK CA CA D 58 O HOH D 80 1555 1555 2.47 LINK CA CA D 58 O HOH D 81 1555 1555 2.48 LINK CA CA D 58 O HOH G 76 1555 1555 2.42 LINK O6 DG E 26 NA NA F 50 1555 1555 2.66 LINK O6 DG E 27 NA NA F 50 1555 1555 2.55 LINK O6 DG E 28 NA NA E 51 1555 1555 2.43 LINK O6 DG E 29 NA NA E 52 1555 1555 2.31 LINK NA NA E 51 O6 DG F 33 1555 1555 2.97 LINK NA NA E 51 O6 DG F 34 1555 1555 2.59 LINK NA NA E 51 O6 DG G 40 1555 1555 2.51 LINK NA NA E 51 O6 DG H 46 1555 1555 2.38 LINK NA NA E 52 O HOH E 62 1555 1555 2.38 LINK NA NA E 52 O6 DG F 35 1555 1555 2.33 LINK NA NA E 52 O6 DG G 41 1555 1555 2.34 LINK NA NA E 52 O6 DG H 47 1555 1555 2.25 LINK O6 DG F 32 NA NA F 50 1555 1555 2.73 LINK O6 DG F 33 NA NA F 50 1555 1555 2.46 LINK NA NA F 50 O6 DG G 38 1555 1555 2.82 LINK NA NA F 50 O6 DG G 39 1555 1555 2.59 LINK NA NA F 50 O6 DG H 44 1555 1555 2.80 LINK NA NA F 50 O6 DG H 45 1555 1555 2.58 SITE 1 AC1 5 DG A 5 DG B 11 HOH B 61 DG C 17 SITE 2 AC1 5 DG D 23 SITE 1 AC2 10 CA A 55 DG E 26 DG E 27 NA E 51 SITE 2 AC2 10 DG F 32 DG F 33 DG G 38 DG G 39 SITE 3 AC2 10 DG H 44 DG H 45 SITE 1 AC3 9 DG E 27 DG E 28 DG F 33 DG F 34 SITE 2 AC3 9 NA F 50 DG G 39 DG G 40 DG H 45 SITE 3 AC3 9 DG H 46 SITE 1 AC4 5 DG E 29 HOH E 62 DG F 35 DG G 41 SITE 2 AC4 5 DG H 47 SITE 1 AC5 9 DG A 3 DG A 4 CA A 54 DG B 9 SITE 2 AC5 9 DG B 10 DG C 15 DG C 16 DG D 21 SITE 3 AC5 9 DG D 22 SITE 1 AC6 10 DG A 2 DG A 3 CA A 55 DG B 8 SITE 2 AC6 10 DG B 9 DG C 14 DG C 15 DG D 20 SITE 3 AC6 10 DG D 21 CA D 53 SITE 1 AC7 10 DG A 2 CA A 54 DG B 8 DG C 14 SITE 2 AC7 10 DG D 20 DG E 26 DG F 32 NA F 50 SITE 3 AC7 10 DG G 38 DG H 44 SITE 1 AC8 7 HOH A 63 HOH A 64 HOH A 67 HOH A 191 SITE 2 AC8 7 HOH B 68 HOH E 65 HOH E 66 SITE 1 AC9 7 HOH B 69 HOH B 70 HOH B 71 HOH B 73 SITE 2 AC9 7 HOH C 74 DT E 25 HOH H 72 SITE 1 BC1 8 HOH C 78 HOH C 79 HOH C 82 HOH D 75 SITE 2 BC1 8 HOH D 77 HOH D 80 HOH D 81 HOH G 76 SITE 1 BC2 7 HOH A 83 HOH A 88 HOH D 84 HOH D 85 SITE 2 BC2 7 HOH D 87 HOH F 86 DT G 37 SITE 1 BC3 7 HOH A 90 HOH A 91 HOH A 93 HOH A 95 SITE 2 BC3 7 HOH B 89 HOH B 92 HOH B 94 CRYST1 27.357 27.911 34.969 89.11 75.63 79.70 P 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.036554 -0.006643 -0.009570 0.00000 SCALE2 0.000000 0.036415 0.001103 0.00000 SCALE3 0.000000 0.000000 0.029534 0.00000