data_2GWL # _entry.id 2GWL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2GWL RCSB RCSB037637 WWPDB D_1000037637 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2GWM _pdbx_database_related.details 'Crystal structure of the Salmonella SpvB ATR Domain' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2GWL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-05-04 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stebbins, C.E.' 1 'Margarit, S.M.' 2 # _citation.id primary _citation.title 'A steric antagonism of actin polymerization by a salmonella virulence protein.' _citation.journal_abbrev Structure _citation.journal_volume 14 _citation.page_first 1219 _citation.page_last 1229 _citation.year 2006 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16905096 _citation.pdbx_database_id_DOI 10.1016/j.str.2006.05.022 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Margarit, S.M.' 1 primary 'Davidson, W.' 2 primary 'Frego, L.' 3 primary 'Stebbins, C.E.' 4 # _cell.length_a 55.585 _cell.length_b 55.585 _cell.length_c 143.577 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 2GWL _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.entry_id 2GWL _symmetry.Int_Tables_number 154 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '65 kDa virulence protein' 22615.570 1 ? ? 'residues 392-591' ? 2 non-polymer syn '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 665.441 1 ? ? ? ? 3 water nat water 18.015 144 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SKQIQALRYYSAQGYSVINKYLRGDDYPETQAKETLLSRDYLSTNEPSDEEFKNAMSVYINDIAEGLSSLPETDHRVVYR GLKLDKPALSDVLKEYTTIGNIIIDKAFMSTSPDKAWINDTILNIYLEKGHKGRILGDVAHFKGEAEMLFPPNTKLKIES IVNCGSQDFASQLSKLRLSDDATADTNRIKRIINMRVLNS ; _entity_poly.pdbx_seq_one_letter_code_can ;SKQIQALRYYSAQGYSVINKYLRGDDYPETQAKETLLSRDYLSTNEPSDEEFKNAMSVYINDIAEGLSSLPETDHRVVYR GLKLDKPALSDVLKEYTTIGNIIIDKAFMSTSPDKAWINDTILNIYLEKGHKGRILGDVAHFKGEAEMLFPPNTKLKIES IVNCGSQDFASQLSKLRLSDDATADTNRIKRIINMRVLNS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 LYS n 1 3 GLN n 1 4 ILE n 1 5 GLN n 1 6 ALA n 1 7 LEU n 1 8 ARG n 1 9 TYR n 1 10 TYR n 1 11 SER n 1 12 ALA n 1 13 GLN n 1 14 GLY n 1 15 TYR n 1 16 SER n 1 17 VAL n 1 18 ILE n 1 19 ASN n 1 20 LYS n 1 21 TYR n 1 22 LEU n 1 23 ARG n 1 24 GLY n 1 25 ASP n 1 26 ASP n 1 27 TYR n 1 28 PRO n 1 29 GLU n 1 30 THR n 1 31 GLN n 1 32 ALA n 1 33 LYS n 1 34 GLU n 1 35 THR n 1 36 LEU n 1 37 LEU n 1 38 SER n 1 39 ARG n 1 40 ASP n 1 41 TYR n 1 42 LEU n 1 43 SER n 1 44 THR n 1 45 ASN n 1 46 GLU n 1 47 PRO n 1 48 SER n 1 49 ASP n 1 50 GLU n 1 51 GLU n 1 52 PHE n 1 53 LYS n 1 54 ASN n 1 55 ALA n 1 56 MET n 1 57 SER n 1 58 VAL n 1 59 TYR n 1 60 ILE n 1 61 ASN n 1 62 ASP n 1 63 ILE n 1 64 ALA n 1 65 GLU n 1 66 GLY n 1 67 LEU n 1 68 SER n 1 69 SER n 1 70 LEU n 1 71 PRO n 1 72 GLU n 1 73 THR n 1 74 ASP n 1 75 HIS n 1 76 ARG n 1 77 VAL n 1 78 VAL n 1 79 TYR n 1 80 ARG n 1 81 GLY n 1 82 LEU n 1 83 LYS n 1 84 LEU n 1 85 ASP n 1 86 LYS n 1 87 PRO n 1 88 ALA n 1 89 LEU n 1 90 SER n 1 91 ASP n 1 92 VAL n 1 93 LEU n 1 94 LYS n 1 95 GLU n 1 96 TYR n 1 97 THR n 1 98 THR n 1 99 ILE n 1 100 GLY n 1 101 ASN n 1 102 ILE n 1 103 ILE n 1 104 ILE n 1 105 ASP n 1 106 LYS n 1 107 ALA n 1 108 PHE n 1 109 MET n 1 110 SER n 1 111 THR n 1 112 SER n 1 113 PRO n 1 114 ASP n 1 115 LYS n 1 116 ALA n 1 117 TRP n 1 118 ILE n 1 119 ASN n 1 120 ASP n 1 121 THR n 1 122 ILE n 1 123 LEU n 1 124 ASN n 1 125 ILE n 1 126 TYR n 1 127 LEU n 1 128 GLU n 1 129 LYS n 1 130 GLY n 1 131 HIS n 1 132 LYS n 1 133 GLY n 1 134 ARG n 1 135 ILE n 1 136 LEU n 1 137 GLY n 1 138 ASP n 1 139 VAL n 1 140 ALA n 1 141 HIS n 1 142 PHE n 1 143 LYS n 1 144 GLY n 1 145 GLU n 1 146 ALA n 1 147 GLU n 1 148 MET n 1 149 LEU n 1 150 PHE n 1 151 PRO n 1 152 PRO n 1 153 ASN n 1 154 THR n 1 155 LYS n 1 156 LEU n 1 157 LYS n 1 158 ILE n 1 159 GLU n 1 160 SER n 1 161 ILE n 1 162 VAL n 1 163 ASN n 1 164 CYS n 1 165 GLY n 1 166 SER n 1 167 GLN n 1 168 ASP n 1 169 PHE n 1 170 ALA n 1 171 SER n 1 172 GLN n 1 173 LEU n 1 174 SER n 1 175 LYS n 1 176 LEU n 1 177 ARG n 1 178 LEU n 1 179 SER n 1 180 ASP n 1 181 ASP n 1 182 ALA n 1 183 THR n 1 184 ALA n 1 185 ASP n 1 186 THR n 1 187 ASN n 1 188 ARG n 1 189 ILE n 1 190 LYS n 1 191 ARG n 1 192 ILE n 1 193 ILE n 1 194 ASN n 1 195 MET n 1 196 ARG n 1 197 VAL n 1 198 LEU n 1 199 ASN n 1 200 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Salmonella _entity_src_gen.pdbx_gene_src_gene mkaA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Salmonella typhimurium' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 602 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VRP2_SALCH _struct_ref.pdbx_db_accession P17450 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 392 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2GWL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 200 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P17450 _struct_ref_seq.db_align_beg 392 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 591 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 392 _struct_ref_seq.pdbx_auth_seq_align_end 591 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAI non-polymer . '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' NADH 'C21 H29 N7 O14 P2' 665.441 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2GWL _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.83 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 56.54 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2003-11-17 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X9A' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.979 _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X9A # _reflns.entry_id 2GWL _reflns.d_resolution_high 1.900 _reflns.d_resolution_low 30.000 _reflns.number_obs 21074 _reflns.pdbx_Rmerge_I_obs 0.04 _reflns.pdbx_netI_over_sigmaI 20.600 _reflns.pdbx_chi_squared 1.110 _reflns.pdbx_redundancy 5.400 _reflns.percent_possible_obs 99.700 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.90 1.97 ? ? ? 0.367 ? ? 1.076 5.50 ? 2088 100.00 1 1 1.97 2.05 ? ? ? 0.242 ? ? 1.118 5.40 ? 2066 100.00 2 1 2.05 2.14 ? ? ? 0.165 ? ? 1.121 5.40 ? 2077 100.00 3 1 2.14 2.25 ? ? ? 0.124 ? ? 1.083 5.50 ? 2055 100.00 4 1 2.25 2.39 ? ? ? 0.094 ? ? 1.108 5.50 ? 2089 100.00 5 1 2.39 2.58 ? ? ? 0.066 ? ? 1.082 5.40 ? 2089 100.00 6 1 2.58 2.84 ? ? ? 0.049 ? ? 1.117 5.40 ? 2106 100.00 7 1 2.84 3.25 ? ? ? 0.036 ? ? 1.121 5.40 ? 2136 100.00 8 1 3.25 4.09 ? ? ? 0.027 ? ? 1.153 5.30 ? 2140 100.00 9 1 4.09 30.00 ? ? ? 0.023 ? ? 1.118 4.90 ? 2228 97.20 10 1 # _refine.entry_id 2GWL _refine.ls_d_res_high 1.900 _refine.ls_d_res_low 30 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.610 _refine.ls_number_reflns_obs 20956 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all 0.196 _refine.ls_R_factor_R_work 0.194 _refine.ls_R_factor_R_free 0.235 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1075 _refine.B_iso_mean 30.100 _refine.aniso_B[1][1] 0.380 _refine.aniso_B[2][2] 0.380 _refine.aniso_B[3][3] -0.570 _refine.aniso_B[1][2] 0.190 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.956 _refine.correlation_coeff_Fo_to_Fc_free 0.941 _refine.pdbx_overall_ESU_R 0.140 _refine.pdbx_overall_ESU_R_Free 0.136 _refine.overall_SU_ML 0.102 _refine.overall_SU_B 7.681 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_obs 0.195 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1589 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 44 _refine_hist.number_atoms_solvent 144 _refine_hist.number_atoms_total 1777 _refine_hist.d_res_high 1.900 _refine_hist.d_res_low 30 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1663 0.021 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1486 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2254 1.865 2.010 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 3479 0.884 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 199 6.265 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 75 33.539 24.800 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 301 14.336 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10 19.398 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 254 0.110 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1802 0.008 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 308 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 332 0.232 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1523 0.192 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 824 0.186 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 1001 0.090 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 129 0.213 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 21 0.617 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 57 0.239 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 24 0.345 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1280 1.466 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 405 0.348 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1613 1.698 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 767 2.962 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 641 4.167 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.090 _refine_ls_shell.number_reflns_R_work 1405 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.223 _refine_ls_shell.R_factor_R_free 0.259 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 84 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 1489 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2GWL _struct.title 'Crystal structure of the Salmonella SpvB ATR Domain in complex with NADH' _struct.pdbx_descriptor '65 kDa virulence protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2GWL _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'Salmonella, SpvB, ADP-ribosyltransferase, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 1 ? GLN A 13 ? SER A 392 GLN A 404 1 ? 13 HELX_P HELX_P2 2 GLY A 14 ? GLY A 24 ? GLY A 405 GLY A 415 1 ? 11 HELX_P HELX_P3 3 PRO A 28 ? ARG A 39 ? PRO A 419 ARG A 430 1 ? 12 HELX_P HELX_P4 4 SER A 48 ? SER A 69 ? SER A 439 SER A 460 1 ? 22 HELX_P HELX_P5 5 LYS A 86 ? ALA A 88 ? LYS A 477 ALA A 479 5 ? 3 HELX_P HELX_P6 6 LEU A 89 ? THR A 97 ? LEU A 480 THR A 488 1 ? 9 HELX_P HELX_P7 7 GLY A 137 ? ALA A 140 ? GLY A 528 ALA A 531 5 ? 4 HELX_P HELX_P8 8 SER A 166 ? LYS A 175 ? SER A 557 LYS A 566 1 ? 10 HELX_P HELX_P9 9 ASP A 185 ? ILE A 189 ? ASP A 576 ILE A 580 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 164 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 164 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 555 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 555 _struct_conn.ptnr2_symmetry 4_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.184 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 77 ? LEU A 82 ? VAL A 468 LEU A 473 A 2 THR A 121 ? TYR A 126 ? THR A 512 TYR A 517 A 3 ARG A 191 ? VAL A 197 ? ARG A 582 VAL A 588 A 4 THR A 154 ? ASN A 163 ? THR A 545 ASN A 554 A 5 ILE A 102 ? ASP A 105 ? ILE A 493 ASP A 496 B 1 MET A 109 ? THR A 111 ? MET A 500 THR A 502 B 2 MET A 148 ? PHE A 150 ? MET A 539 PHE A 541 B 3 ARG A 134 ? ILE A 135 ? ARG A 525 ILE A 526 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 82 ? N LEU A 473 O THR A 121 ? O THR A 512 A 2 3 N ASN A 124 ? N ASN A 515 O MET A 195 ? O MET A 586 A 3 4 O ILE A 192 ? O ILE A 583 N VAL A 162 ? N VAL A 553 A 4 5 O THR A 154 ? O THR A 545 N ASP A 105 ? N ASP A 496 B 1 2 N MET A 109 ? N MET A 500 O PHE A 150 ? O PHE A 541 B 2 3 O LEU A 149 ? O LEU A 540 N ARG A 134 ? N ARG A 525 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 16 _struct_site.details 'BINDING SITE FOR RESIDUE NAI A 592' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 HOH C . ? HOH A 14 . ? 1_555 ? 2 AC1 16 HOH C . ? HOH A 52 . ? 1_555 ? 3 AC1 16 HOH C . ? HOH A 54 . ? 1_555 ? 4 AC1 16 HOH C . ? HOH A 69 . ? 1_555 ? 5 AC1 16 HOH C . ? HOH A 133 . ? 1_555 ? 6 AC1 16 ARG A 23 ? ARG A 414 . ? 1_555 ? 7 AC1 16 ARG A 80 ? ARG A 471 . ? 1_555 ? 8 AC1 16 GLY A 81 ? GLY A 472 . ? 1_555 ? 9 AC1 16 LYS A 83 ? LYS A 474 . ? 1_555 ? 10 AC1 16 LYS A 86 ? LYS A 477 . ? 1_555 ? 11 AC1 16 LEU A 89 ? LEU A 480 . ? 1_555 ? 12 AC1 16 SER A 110 ? SER A 501 . ? 1_555 ? 13 AC1 16 THR A 111 ? THR A 502 . ? 1_555 ? 14 AC1 16 GLU A 147 ? GLU A 538 . ? 1_555 ? 15 AC1 16 LYS A 155 ? LYS A 546 . ? 5_565 ? 16 AC1 16 SER A 200 ? SER A 591 . ? 5_565 ? # _atom_sites.entry_id 2GWL _atom_sites.fract_transf_matrix[1][1] 0.01799 _atom_sites.fract_transf_matrix[1][2] 0.01039 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.02077 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.00697 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 392 392 SER SER A . n A 1 2 LYS 2 393 393 LYS LYS A . n A 1 3 GLN 3 394 394 GLN GLN A . n A 1 4 ILE 4 395 395 ILE ILE A . n A 1 5 GLN 5 396 396 GLN GLN A . n A 1 6 ALA 6 397 397 ALA ALA A . n A 1 7 LEU 7 398 398 LEU LEU A . n A 1 8 ARG 8 399 399 ARG ARG A . n A 1 9 TYR 9 400 400 TYR TYR A . n A 1 10 TYR 10 401 401 TYR TYR A . n A 1 11 SER 11 402 402 SER SER A . n A 1 12 ALA 12 403 403 ALA ALA A . n A 1 13 GLN 13 404 404 GLN GLN A . n A 1 14 GLY 14 405 405 GLY GLY A . n A 1 15 TYR 15 406 406 TYR TYR A . n A 1 16 SER 16 407 407 SER SER A . n A 1 17 VAL 17 408 408 VAL VAL A . n A 1 18 ILE 18 409 409 ILE ILE A . n A 1 19 ASN 19 410 410 ASN ASN A . n A 1 20 LYS 20 411 411 LYS LYS A . n A 1 21 TYR 21 412 412 TYR TYR A . n A 1 22 LEU 22 413 413 LEU LEU A . n A 1 23 ARG 23 414 414 ARG ARG A . n A 1 24 GLY 24 415 415 GLY GLY A . n A 1 25 ASP 25 416 416 ASP ASP A . n A 1 26 ASP 26 417 417 ASP ASP A . n A 1 27 TYR 27 418 418 TYR TYR A . n A 1 28 PRO 28 419 419 PRO PRO A . n A 1 29 GLU 29 420 420 GLU GLU A . n A 1 30 THR 30 421 421 THR THR A . n A 1 31 GLN 31 422 422 GLN GLN A . n A 1 32 ALA 32 423 423 ALA ALA A . n A 1 33 LYS 33 424 424 LYS LYS A . n A 1 34 GLU 34 425 425 GLU GLU A . n A 1 35 THR 35 426 426 THR THR A . n A 1 36 LEU 36 427 427 LEU LEU A . n A 1 37 LEU 37 428 428 LEU LEU A . n A 1 38 SER 38 429 429 SER SER A . n A 1 39 ARG 39 430 430 ARG ARG A . n A 1 40 ASP 40 431 431 ASP ASP A . n A 1 41 TYR 41 432 432 TYR TYR A . n A 1 42 LEU 42 433 433 LEU LEU A . n A 1 43 SER 43 434 434 SER SER A . n A 1 44 THR 44 435 435 THR THR A . n A 1 45 ASN 45 436 436 ASN ASN A . n A 1 46 GLU 46 437 437 GLU GLU A . n A 1 47 PRO 47 438 438 PRO PRO A . n A 1 48 SER 48 439 439 SER SER A . n A 1 49 ASP 49 440 440 ASP ASP A . n A 1 50 GLU 50 441 441 GLU GLU A . n A 1 51 GLU 51 442 442 GLU GLU A . n A 1 52 PHE 52 443 443 PHE PHE A . n A 1 53 LYS 53 444 444 LYS LYS A . n A 1 54 ASN 54 445 445 ASN ASN A . n A 1 55 ALA 55 446 446 ALA ALA A . n A 1 56 MET 56 447 447 MET MET A . n A 1 57 SER 57 448 448 SER SER A . n A 1 58 VAL 58 449 449 VAL VAL A . n A 1 59 TYR 59 450 450 TYR TYR A . n A 1 60 ILE 60 451 451 ILE ILE A . n A 1 61 ASN 61 452 452 ASN ASN A . n A 1 62 ASP 62 453 453 ASP ASP A . n A 1 63 ILE 63 454 454 ILE ILE A . n A 1 64 ALA 64 455 455 ALA ALA A . n A 1 65 GLU 65 456 456 GLU GLU A . n A 1 66 GLY 66 457 457 GLY GLY A . n A 1 67 LEU 67 458 458 LEU LEU A . n A 1 68 SER 68 459 459 SER SER A . n A 1 69 SER 69 460 460 SER SER A . n A 1 70 LEU 70 461 461 LEU LEU A . n A 1 71 PRO 71 462 462 PRO PRO A . n A 1 72 GLU 72 463 463 GLU GLU A . n A 1 73 THR 73 464 464 THR THR A . n A 1 74 ASP 74 465 465 ASP ASP A . n A 1 75 HIS 75 466 466 HIS HIS A . n A 1 76 ARG 76 467 467 ARG ARG A . n A 1 77 VAL 77 468 468 VAL VAL A . n A 1 78 VAL 78 469 469 VAL VAL A . n A 1 79 TYR 79 470 470 TYR TYR A . n A 1 80 ARG 80 471 471 ARG ARG A . n A 1 81 GLY 81 472 472 GLY GLY A . n A 1 82 LEU 82 473 473 LEU LEU A . n A 1 83 LYS 83 474 474 LYS LYS A . n A 1 84 LEU 84 475 475 LEU LEU A . n A 1 85 ASP 85 476 476 ASP ASP A . n A 1 86 LYS 86 477 477 LYS LYS A . n A 1 87 PRO 87 478 478 PRO PRO A . n A 1 88 ALA 88 479 479 ALA ALA A . n A 1 89 LEU 89 480 480 LEU LEU A . n A 1 90 SER 90 481 481 SER SER A . n A 1 91 ASP 91 482 482 ASP ASP A . n A 1 92 VAL 92 483 483 VAL VAL A . n A 1 93 LEU 93 484 484 LEU LEU A . n A 1 94 LYS 94 485 485 LYS LYS A . n A 1 95 GLU 95 486 486 GLU GLU A . n A 1 96 TYR 96 487 487 TYR TYR A . n A 1 97 THR 97 488 488 THR THR A . n A 1 98 THR 98 489 489 THR THR A . n A 1 99 ILE 99 490 490 ILE ILE A . n A 1 100 GLY 100 491 491 GLY GLY A . n A 1 101 ASN 101 492 492 ASN ASN A . n A 1 102 ILE 102 493 493 ILE ILE A . n A 1 103 ILE 103 494 494 ILE ILE A . n A 1 104 ILE 104 495 495 ILE ILE A . n A 1 105 ASP 105 496 496 ASP ASP A . n A 1 106 LYS 106 497 497 LYS LYS A . n A 1 107 ALA 107 498 498 ALA ALA A . n A 1 108 PHE 108 499 499 PHE PHE A . n A 1 109 MET 109 500 500 MET MET A . n A 1 110 SER 110 501 501 SER SER A . n A 1 111 THR 111 502 502 THR THR A . n A 1 112 SER 112 503 503 SER SER A . n A 1 113 PRO 113 504 504 PRO PRO A . n A 1 114 ASP 114 505 505 ASP ASP A . n A 1 115 LYS 115 506 506 LYS LYS A . n A 1 116 ALA 116 507 507 ALA ALA A . n A 1 117 TRP 117 508 508 TRP TRP A . n A 1 118 ILE 118 509 509 ILE ILE A . n A 1 119 ASN 119 510 510 ASN ASN A . n A 1 120 ASP 120 511 511 ASP ASP A . n A 1 121 THR 121 512 512 THR THR A . n A 1 122 ILE 122 513 513 ILE ILE A . n A 1 123 LEU 123 514 514 LEU LEU A . n A 1 124 ASN 124 515 515 ASN ASN A . n A 1 125 ILE 125 516 516 ILE ILE A . n A 1 126 TYR 126 517 517 TYR TYR A . n A 1 127 LEU 127 518 518 LEU LEU A . n A 1 128 GLU 128 519 519 GLU GLU A . n A 1 129 LYS 129 520 520 LYS LYS A . n A 1 130 GLY 130 521 521 GLY GLY A . n A 1 131 HIS 131 522 522 HIS HIS A . n A 1 132 LYS 132 523 523 LYS LYS A . n A 1 133 GLY 133 524 524 GLY GLY A . n A 1 134 ARG 134 525 525 ARG ARG A . n A 1 135 ILE 135 526 526 ILE ILE A . n A 1 136 LEU 136 527 527 LEU LEU A . n A 1 137 GLY 137 528 528 GLY GLY A . n A 1 138 ASP 138 529 529 ASP ASP A . n A 1 139 VAL 139 530 530 VAL VAL A . n A 1 140 ALA 140 531 531 ALA ALA A . n A 1 141 HIS 141 532 532 HIS HIS A . n A 1 142 PHE 142 533 533 PHE PHE A . n A 1 143 LYS 143 534 534 LYS LYS A . n A 1 144 GLY 144 535 535 GLY GLY A . n A 1 145 GLU 145 536 536 GLU GLU A . n A 1 146 ALA 146 537 537 ALA ALA A . n A 1 147 GLU 147 538 538 GLU GLU A . n A 1 148 MET 148 539 539 MET MET A . n A 1 149 LEU 149 540 540 LEU LEU A . n A 1 150 PHE 150 541 541 PHE PHE A . n A 1 151 PRO 151 542 542 PRO PRO A . n A 1 152 PRO 152 543 543 PRO PRO A . n A 1 153 ASN 153 544 544 ASN ASN A . n A 1 154 THR 154 545 545 THR THR A . n A 1 155 LYS 155 546 546 LYS LYS A . n A 1 156 LEU 156 547 547 LEU LEU A . n A 1 157 LYS 157 548 548 LYS LYS A . n A 1 158 ILE 158 549 549 ILE ILE A . n A 1 159 GLU 159 550 550 GLU GLU A . n A 1 160 SER 160 551 551 SER SER A . n A 1 161 ILE 161 552 552 ILE ILE A . n A 1 162 VAL 162 553 553 VAL VAL A . n A 1 163 ASN 163 554 554 ASN ASN A . n A 1 164 CYS 164 555 555 CYS CYS A . n A 1 165 GLY 165 556 556 GLY GLY A . n A 1 166 SER 166 557 557 SER SER A . n A 1 167 GLN 167 558 558 GLN GLN A . n A 1 168 ASP 168 559 559 ASP ASP A . n A 1 169 PHE 169 560 560 PHE PHE A . n A 1 170 ALA 170 561 561 ALA ALA A . n A 1 171 SER 171 562 562 SER SER A . n A 1 172 GLN 172 563 563 GLN GLN A . n A 1 173 LEU 173 564 564 LEU LEU A . n A 1 174 SER 174 565 565 SER SER A . n A 1 175 LYS 175 566 566 LYS LYS A . n A 1 176 LEU 176 567 567 LEU LEU A . n A 1 177 ARG 177 568 568 ARG ARG A . n A 1 178 LEU 178 569 569 LEU LEU A . n A 1 179 SER 179 570 570 SER SER A . n A 1 180 ASP 180 571 571 ASP ASP A . n A 1 181 ASP 181 572 572 ASP ASP A . n A 1 182 ALA 182 573 573 ALA ALA A . n A 1 183 THR 183 574 574 THR THR A . n A 1 184 ALA 184 575 575 ALA ALA A . n A 1 185 ASP 185 576 576 ASP ASP A . n A 1 186 THR 186 577 577 THR THR A . n A 1 187 ASN 187 578 578 ASN ASN A . n A 1 188 ARG 188 579 579 ARG ARG A . n A 1 189 ILE 189 580 580 ILE ILE A . n A 1 190 LYS 190 581 581 LYS LYS A . n A 1 191 ARG 191 582 582 ARG ARG A . n A 1 192 ILE 192 583 583 ILE ILE A . n A 1 193 ILE 193 584 584 ILE ILE A . n A 1 194 ASN 194 585 585 ASN ASN A . n A 1 195 MET 195 586 586 MET MET A . n A 1 196 ARG 196 587 587 ARG ARG A . n A 1 197 VAL 197 588 588 VAL VAL A . n A 1 198 LEU 198 589 589 LEU LEU A . n A 1 199 ASN 199 590 590 ASN ASN A . n A 1 200 SER 200 591 591 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAI 1 592 500 NAI NAD A . C 3 HOH 1 1 1 HOH HOH A . C 3 HOH 2 2 2 HOH HOH A . C 3 HOH 3 3 3 HOH HOH A . C 3 HOH 4 4 4 HOH HOH A . C 3 HOH 5 5 5 HOH HOH A . C 3 HOH 6 6 6 HOH HOH A . C 3 HOH 7 7 7 HOH HOH A . C 3 HOH 8 8 8 HOH HOH A . C 3 HOH 9 9 9 HOH HOH A . C 3 HOH 10 10 10 HOH HOH A . C 3 HOH 11 11 11 HOH HOH A . C 3 HOH 12 12 12 HOH HOH A . C 3 HOH 13 13 13 HOH HOH A . C 3 HOH 14 14 14 HOH HOH A . C 3 HOH 15 15 15 HOH HOH A . C 3 HOH 16 16 16 HOH HOH A . C 3 HOH 17 17 17 HOH HOH A . C 3 HOH 18 18 18 HOH HOH A . C 3 HOH 19 19 19 HOH HOH A . C 3 HOH 20 20 20 HOH HOH A . C 3 HOH 21 21 21 HOH HOH A . C 3 HOH 22 22 22 HOH HOH A . C 3 HOH 23 23 23 HOH HOH A . C 3 HOH 24 24 24 HOH HOH A . C 3 HOH 25 25 25 HOH HOH A . C 3 HOH 26 26 26 HOH HOH A . C 3 HOH 27 27 27 HOH HOH A . C 3 HOH 28 28 28 HOH HOH A . C 3 HOH 29 29 29 HOH HOH A . C 3 HOH 30 30 30 HOH HOH A . C 3 HOH 31 31 31 HOH HOH A . C 3 HOH 32 32 32 HOH HOH A . C 3 HOH 33 33 33 HOH HOH A . C 3 HOH 34 34 34 HOH HOH A . C 3 HOH 35 35 35 HOH HOH A . C 3 HOH 36 36 36 HOH HOH A . C 3 HOH 37 37 37 HOH HOH A . C 3 HOH 38 38 38 HOH HOH A . C 3 HOH 39 39 39 HOH HOH A . C 3 HOH 40 40 40 HOH HOH A . C 3 HOH 41 41 41 HOH HOH A . C 3 HOH 42 42 42 HOH HOH A . C 3 HOH 43 43 43 HOH HOH A . C 3 HOH 44 44 44 HOH HOH A . C 3 HOH 45 45 45 HOH HOH A . C 3 HOH 46 46 46 HOH HOH A . C 3 HOH 47 47 47 HOH HOH A . C 3 HOH 48 48 48 HOH HOH A . C 3 HOH 49 49 49 HOH HOH A . C 3 HOH 50 50 50 HOH HOH A . C 3 HOH 51 51 51 HOH HOH A . C 3 HOH 52 52 52 HOH HOH A . C 3 HOH 53 53 53 HOH HOH A . C 3 HOH 54 54 54 HOH HOH A . C 3 HOH 55 55 55 HOH HOH A . C 3 HOH 56 56 56 HOH HOH A . C 3 HOH 57 57 57 HOH HOH A . C 3 HOH 58 58 58 HOH HOH A . C 3 HOH 59 59 59 HOH HOH A . C 3 HOH 60 60 60 HOH HOH A . C 3 HOH 61 61 61 HOH HOH A . C 3 HOH 62 62 62 HOH HOH A . C 3 HOH 63 63 63 HOH HOH A . C 3 HOH 64 64 64 HOH HOH A . C 3 HOH 65 65 65 HOH HOH A . C 3 HOH 66 66 66 HOH HOH A . C 3 HOH 67 67 67 HOH HOH A . C 3 HOH 68 68 68 HOH HOH A . C 3 HOH 69 69 69 HOH HOH A . C 3 HOH 70 70 70 HOH HOH A . C 3 HOH 71 71 71 HOH HOH A . C 3 HOH 72 72 72 HOH HOH A . C 3 HOH 73 73 73 HOH HOH A . C 3 HOH 74 74 74 HOH HOH A . C 3 HOH 75 75 75 HOH HOH A . C 3 HOH 76 76 76 HOH HOH A . C 3 HOH 77 77 77 HOH HOH A . C 3 HOH 78 78 78 HOH HOH A . C 3 HOH 79 79 79 HOH HOH A . C 3 HOH 80 80 80 HOH HOH A . C 3 HOH 81 81 81 HOH HOH A . C 3 HOH 82 82 82 HOH HOH A . C 3 HOH 83 83 83 HOH HOH A . C 3 HOH 84 84 84 HOH HOH A . C 3 HOH 85 85 85 HOH HOH A . C 3 HOH 86 86 86 HOH HOH A . C 3 HOH 87 87 87 HOH HOH A . C 3 HOH 88 88 88 HOH HOH A . C 3 HOH 89 89 89 HOH HOH A . C 3 HOH 90 90 90 HOH HOH A . C 3 HOH 91 91 91 HOH HOH A . C 3 HOH 92 92 92 HOH HOH A . C 3 HOH 93 93 93 HOH HOH A . C 3 HOH 94 94 94 HOH HOH A . C 3 HOH 95 95 95 HOH HOH A . C 3 HOH 96 96 96 HOH HOH A . C 3 HOH 97 97 97 HOH HOH A . C 3 HOH 98 98 98 HOH HOH A . C 3 HOH 99 99 99 HOH HOH A . C 3 HOH 100 100 100 HOH HOH A . C 3 HOH 101 101 101 HOH HOH A . C 3 HOH 102 102 102 HOH HOH A . C 3 HOH 103 103 103 HOH HOH A . C 3 HOH 104 104 104 HOH HOH A . C 3 HOH 105 105 105 HOH HOH A . C 3 HOH 106 106 106 HOH HOH A . C 3 HOH 107 107 107 HOH HOH A . C 3 HOH 108 108 108 HOH HOH A . C 3 HOH 109 109 109 HOH HOH A . C 3 HOH 110 110 110 HOH HOH A . C 3 HOH 111 111 111 HOH HOH A . C 3 HOH 112 112 112 HOH HOH A . C 3 HOH 113 113 113 HOH HOH A . C 3 HOH 114 114 114 HOH HOH A . C 3 HOH 115 115 115 HOH HOH A . C 3 HOH 116 116 116 HOH HOH A . C 3 HOH 117 117 117 HOH HOH A . C 3 HOH 118 118 118 HOH HOH A . C 3 HOH 119 119 119 HOH HOH A . C 3 HOH 120 120 120 HOH HOH A . C 3 HOH 121 121 121 HOH HOH A . C 3 HOH 122 122 122 HOH HOH A . C 3 HOH 123 123 123 HOH HOH A . C 3 HOH 124 124 124 HOH HOH A . C 3 HOH 125 125 125 HOH HOH A . C 3 HOH 126 126 126 HOH HOH A . C 3 HOH 127 127 127 HOH HOH A . C 3 HOH 128 128 128 HOH HOH A . C 3 HOH 129 129 129 HOH HOH A . C 3 HOH 130 130 130 HOH HOH A . C 3 HOH 131 131 131 HOH HOH A . C 3 HOH 132 132 132 HOH HOH A . C 3 HOH 133 133 133 HOH HOH A . C 3 HOH 134 134 134 HOH HOH A . C 3 HOH 135 135 135 HOH HOH A . C 3 HOH 136 136 136 HOH HOH A . C 3 HOH 137 137 137 HOH HOH A . C 3 HOH 138 138 138 HOH HOH A . C 3 HOH 139 139 139 HOH HOH A . C 3 HOH 140 140 140 HOH HOH A . C 3 HOH 141 141 141 HOH HOH A . C 3 HOH 142 142 142 HOH HOH A . C 3 HOH 143 143 143 HOH HOH A . C 3 HOH 144 144 144 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-08-29 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2013-10-30 5 'Structure model' 1 4 2017-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Non-polymer description' 4 5 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 5 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_software.classification' 2 5 'Structure model' '_software.contact_author' 3 5 'Structure model' '_software.contact_author_email' 4 5 'Structure model' '_software.date' 5 5 'Structure model' '_software.language' 6 5 'Structure model' '_software.location' 7 5 'Structure model' '_software.name' 8 5 'Structure model' '_software.type' 9 5 'Structure model' '_software.version' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE1 A GLN 404 ? ? O A HOH 140 ? ? 1.92 2 1 NZ A LYS 444 ? ? O A HOH 45 ? ? 1.93 3 1 O A HOH 13 ? ? O A HOH 127 ? ? 1.95 4 1 CE A LYS 444 ? ? O A HOH 45 ? ? 2.03 5 1 N A SER 392 ? ? O A HOH 67 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 142 ? ? 1_555 O A HOH 143 ? ? 5_665 1.44 2 1 NZ A LYS 393 ? ? 1_555 NZ A LYS 566 ? ? 3_665 1.54 3 1 O A ARG 430 ? ? 1_555 NZ A LYS 566 ? ? 3_665 2.16 4 1 NZ A LYS 393 ? ? 1_555 CE A LYS 566 ? ? 3_665 2.16 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB A SER 570 ? ? OG A SER 570 ? ? 1.503 1.418 0.085 0.013 N 2 1 CZ A ARG 579 ? ? NH1 A ARG 579 ? ? 1.436 1.326 0.110 0.013 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 559 ? ? CG A ASP 559 ? ? OD1 A ASP 559 ? ? 125.83 118.30 7.53 0.90 N 2 1 CB A ASP 559 ? ? CG A ASP 559 ? ? OD2 A ASP 559 ? ? 112.06 118.30 -6.24 0.90 N 3 1 NE A ARG 579 ? ? CZ A ARG 579 ? ? NH1 A ARG 579 ? ? 125.90 120.30 5.60 0.50 N 4 1 NE A ARG 579 ? ? CZ A ARG 579 ? ? NH2 A ARG 579 ? ? 116.46 120.30 -3.84 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 404 ? ? -151.08 -30.97 2 1 ASN A 544 ? ? 83.26 28.68 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' NAI 3 water HOH #