HEADER SIGNALING PROTEIN 09-MAY-06 2GY7 TITLE ANGIOPOIETIN-2/TIE2 COMPLEX CRYSTAL STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANGIOPOIETIN-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ANGIOPOIETIN-2 RECEPTOR BINDING DOMAIN (RESIDUES 281-495); COMPND 5 SYNONYM: ANG-2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ANGIOPOIETIN-1 RECEPTOR; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: TIE2 LIGAND-BINDING DOMAIN (RESIDUES 23-445); COMPND 11 SYNONYM: TYROSINE-PROTEIN KINASE RECEPTOR TIE-2, HTIE2, TYROSINE- COMPND 12 PROTEIN KINASE RECEPTOR TEK, P140 TEK, TUNICA INTERNA ENDOTHELIAL COMPND 13 CELL KINASE, CD202B ANTIGEN; COMPND 14 EC: 2.7.10.1; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM_CELL_LINE: HEK 293; SOURCE 6 EXPRESSION_SYSTEM_VECTOR: PCDNA3.1 (INVITROGEN); SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: TEK, TIE2; SOURCE 12 EXPRESSION_SYSTEM_CELL_LINE: HEK 293; SOURCE 13 EXPRESSION_SYSTEM_VECTOR: PCDNA3.1 (INVITROGEN) KEYWDS RECEPTOR-LIGAND COMPLEX, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.A.BARTON,D.B.NIKOLOV REVDAT 5 29-JUL-20 2GY7 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 13-JUL-11 2GY7 1 VERSN REVDAT 3 24-FEB-09 2GY7 1 VERSN REVDAT 2 20-JUN-06 2GY7 1 JRNL REVDAT 1 06-JUN-06 2GY7 0 JRNL AUTH W.A.BARTON,D.TZVETKOVA-ROBEV,E.P.MIRANDA,M.V.KOLEV, JRNL AUTH 2 K.R.RAJASHANKAR,J.P.HIMANEN,D.B.NIKOLOV JRNL TITL CRYSTAL STRUCTURES OF THE TIE2 RECEPTOR ECTODOMAIN AND THE JRNL TITL 2 ANGIOPOIETIN-2-TIE2 COMPLEX. JRNL REF NAT.STRUCT.MOL.BIOL. V. 13 524 2006 JRNL REFN ISSN 1545-9993 JRNL PMID 16732286 JRNL DOI 10.1038/NSMB1101 REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.4 REMARK 3 NUMBER OF REFLECTIONS : 26048 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1244 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5032 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 137 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 6.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.73700 REMARK 3 B22 (A**2) : 1.73700 REMARK 3 B33 (A**2) : -3.47300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.690 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.943 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.522 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.201 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 1.952 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 82.68 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 5 : CNS_TOPPAR:CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : CNS_TOPPAR:PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CNS_TOPPAR:DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : CNS_TOPPAR:WATER.TOP REMARK 3 TOPOLOGY FILE 4 : CNS_TOPPAR:ION.TOP REMARK 3 TOPOLOGY FILE 5 : CNS_TOPPAR:CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GY7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037694. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74377 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2 M AMMONIUM SULFATE, 0.1M MES, PH REMARK 280 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.65500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 82.81800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 82.81800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.82750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 82.81800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 82.81800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.48250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 82.81800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 82.81800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.82750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 82.81800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 82.81800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 86.48250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.65500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 276 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN B 158 N GLY B 159 1.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 463 NH2 ARG A 463 7556 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN B 158 C GLY B 159 N -0.258 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 126 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 ASN B 158 CA - C - N ANGL. DEV. = 18.3 DEGREES REMARK 500 ASN B 158 O - C - N ANGL. DEV. = -28.0 DEGREES REMARK 500 PRO B 284 C - N - CA ANGL. DEV. = -9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 290 30.08 -79.57 REMARK 500 HIS A 292 22.68 -71.66 REMARK 500 THR A 293 78.56 -48.20 REMARK 500 ALA A 311 -167.20 -161.64 REMARK 500 ASP A 314 70.73 -103.93 REMARK 500 ALA A 317 -133.78 -152.55 REMARK 500 ARG A 328 83.62 -153.40 REMARK 500 ASP A 330 -164.93 -168.03 REMARK 500 SER A 332 -154.32 40.98 REMARK 500 ASP A 334 -177.62 -52.68 REMARK 500 GLN A 336 87.20 -66.84 REMARK 500 LEU A 355 -71.93 70.86 REMARK 500 LEU A 363 -7.19 -52.20 REMARK 500 GLN A 367 -142.71 -116.57 REMARK 500 VAL A 370 -163.90 -107.50 REMARK 500 GLU A 382 141.55 -177.57 REMARK 500 LEU A 392 -161.17 -111.28 REMARK 500 LEU A 397 9.49 172.50 REMARK 500 ALA A 410 37.24 -96.03 REMARK 500 SER A 417 117.45 -38.09 REMARK 500 GLN A 418 172.91 -48.17 REMARK 500 PRO A 419 69.65 39.63 REMARK 500 ASP A 429 93.71 -65.39 REMARK 500 ASN A 430 48.66 -142.14 REMARK 500 ASP A 431 -169.59 -116.01 REMARK 500 THR A 442 122.89 61.10 REMARK 500 ASP A 448 -103.63 -83.14 REMARK 500 CYS A 450 86.09 86.86 REMARK 500 ASN A 454 100.24 -176.90 REMARK 500 MET A 458 102.11 26.78 REMARK 500 GLN A 462 -77.29 -46.90 REMARK 500 GLN A 464 17.90 -178.09 REMARK 500 ASN A 467 56.95 38.61 REMARK 500 ASN A 470 35.18 -87.96 REMARK 500 ILE A 472 94.55 -67.75 REMARK 500 TYR A 475 -89.17 32.85 REMARK 500 TYR A 476 -8.89 -45.18 REMARK 500 LYS A 478 -124.92 -128.33 REMARK 500 LEU A 484 158.42 -46.64 REMARK 500 PRO A 493 -62.56 -98.45 REMARK 500 ALA A 494 58.39 161.30 REMARK 500 MET B 24 106.48 -174.36 REMARK 500 LEU B 32 101.72 46.16 REMARK 500 SER B 36 -154.44 -130.57 REMARK 500 PHE B 61 -38.67 -24.58 REMARK 500 ALA B 63 -81.97 -53.90 REMARK 500 ARG B 90 137.24 -36.81 REMARK 500 GLU B 91 -22.08 70.34 REMARK 500 ALA B 93 82.54 -60.62 REMARK 500 LYS B 95 61.95 -104.60 REMARK 500 REMARK 500 THIS ENTRY HAS 109 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN B 158 25.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 429 OD1 REMARK 620 2 ASP A 429 OD2 50.2 REMARK 620 3 ASP A 431 OD1 117.8 72.3 REMARK 620 4 ASP A 431 OD2 130.7 83.4 43.8 REMARK 620 5 CYS A 433 O 135.2 162.5 93.9 94.1 REMARK 620 6 CYS A 435 O 102.8 107.0 70.1 106.6 57.1 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GY5 RELATED DB: PDB REMARK 900 TIE2 LIGAND-BINDING DOMAIN REMARK 900 RELATED ID: 1Z3S RELATED DB: PDB REMARK 900 ANGIOPOIETIN-2 RECEPTOR-BINDING DOMAIN DBREF 2GY7 A 281 495 UNP O15123 ANGP2_HUMAN 281 495 DBREF 2GY7 B 23 445 UNP Q02763 TIE2_HUMAN 23 445 SEQADV 2GY7 GLU A 280 UNP O15123 CLONING ARTIFACT SEQRES 1 A 216 GLU PHE ARG ASP CYS ALA GLU VAL PHE LYS SER GLY HIS SEQRES 2 A 216 THR THR ASN GLY ILE TYR THR LEU THR PHE PRO ASN SER SEQRES 3 A 216 THR GLU GLU ILE LYS ALA TYR CYS ASP MET GLU ALA GLY SEQRES 4 A 216 GLY GLY GLY TRP THR ILE ILE GLN ARG ARG GLU ASP GLY SEQRES 5 A 216 SER VAL ASP PHE GLN ARG THR TRP LYS GLU TYR LYS VAL SEQRES 6 A 216 GLY PHE GLY ASN PRO SER GLY GLU TYR TRP LEU GLY ASN SEQRES 7 A 216 GLU PHE VAL SER GLN LEU THR ASN GLN GLN ARG TYR VAL SEQRES 8 A 216 LEU LYS ILE HIS LEU LYS ASP TRP GLU GLY ASN GLU ALA SEQRES 9 A 216 TYR SER LEU TYR GLU HIS PHE TYR LEU SER SER GLU GLU SEQRES 10 A 216 LEU ASN TYR ARG ILE HIS LEU LYS GLY LEU THR GLY THR SEQRES 11 A 216 ALA GLY LYS ILE SER SER ILE SER GLN PRO GLY ASN ASP SEQRES 12 A 216 PHE SER THR LYS ASP GLY ASP ASN ASP LYS CYS ILE CYS SEQRES 13 A 216 LYS CYS SER GLN MET LEU THR GLY GLY TRP TRP PHE ASP SEQRES 14 A 216 ALA CYS GLY PRO SER ASN LEU ASN GLY MET TYR TYR PRO SEQRES 15 A 216 GLN ARG GLN ASN THR ASN LYS PHE ASN GLY ILE LYS TRP SEQRES 16 A 216 TYR TYR TRP LYS GLY SER GLY TYR SER LEU LYS ALA THR SEQRES 17 A 216 THR MET MET ILE ARG PRO ALA ASP SEQRES 1 B 423 ALA MET ASP LEU ILE LEU ILE ASN SER LEU PRO LEU VAL SEQRES 2 B 423 SER ASP ALA GLU THR SER LEU THR CYS ILE ALA SER GLY SEQRES 3 B 423 TRP ARG PRO HIS GLU PRO ILE THR ILE GLY ARG ASP PHE SEQRES 4 B 423 GLU ALA LEU MET ASN GLN HIS GLN ASP PRO LEU GLU VAL SEQRES 5 B 423 THR GLN ASP VAL THR ARG GLU TRP ALA LYS LYS VAL VAL SEQRES 6 B 423 TRP LYS ARG GLU LYS ALA SER LYS ILE ASN GLY ALA TYR SEQRES 7 B 423 PHE CYS GLU GLY ARG VAL ARG GLY GLU ALA ILE ARG ILE SEQRES 8 B 423 ARG THR MET LYS MET ARG GLN GLN ALA SER PHE LEU PRO SEQRES 9 B 423 ALA THR LEU THR MET THR VAL ASP LYS GLY ASP ASN VAL SEQRES 10 B 423 ASN ILE SER PHE LYS LYS VAL LEU ILE LYS GLU GLU ASP SEQRES 11 B 423 ALA VAL ILE TYR LYS ASN GLY SER PHE ILE HIS SER VAL SEQRES 12 B 423 PRO ARG HIS GLU VAL PRO ASP ILE LEU GLU VAL HIS LEU SEQRES 13 B 423 PRO HIS ALA GLN PRO GLN ASP ALA GLY VAL TYR SER ALA SEQRES 14 B 423 ARG TYR ILE GLY GLY ASN LEU PHE THR SER ALA PHE THR SEQRES 15 B 423 ARG LEU ILE VAL ARG ARG CYS GLU ALA GLN LYS TRP GLY SEQRES 16 B 423 PRO GLU CYS ASN HIS LEU CYS THR ALA CYS MET ASN ASN SEQRES 17 B 423 GLY VAL CYS HIS GLU ASP THR GLY GLU CYS ILE CYS PRO SEQRES 18 B 423 PRO GLY PHE MET GLY ARG THR CYS GLU LYS ALA CYS GLU SEQRES 19 B 423 LEU HIS THR PHE GLY ARG THR CYS LYS GLU ARG CYS SER SEQRES 20 B 423 GLY GLN GLU GLY CYS LYS SER TYR VAL PHE CYS LEU PRO SEQRES 21 B 423 ASP PRO TYR GLY CYS SER CYS ALA THR GLY TRP LYS GLY SEQRES 22 B 423 LEU GLN CYS ASN GLU ALA CYS HIS PRO GLY PHE TYR GLY SEQRES 23 B 423 PRO ASP CYS LYS LEU ARG CYS SER CYS ASN ASN GLY GLU SEQRES 24 B 423 MET CYS ASP ARG PHE GLN GLY CYS LEU CYS SER PRO GLY SEQRES 25 B 423 TRP GLN GLY LEU GLN CYS GLU ARG GLU GLY ILE PRO ARG SEQRES 26 B 423 MET THR PRO LYS ILE VAL ASP LEU PRO ASP HIS ILE GLU SEQRES 27 B 423 VAL ASN SER GLY LYS PHE ASN PRO ILE CYS LYS ALA SER SEQRES 28 B 423 GLY TRP PRO LEU PRO THR ASN GLU GLU MET THR LEU VAL SEQRES 29 B 423 LYS PRO ASP GLY THR VAL LEU HIS PRO LYS ASP PHE ASN SEQRES 30 B 423 HIS THR ASP HIS PHE SER VAL ALA ILE PHE THR ILE HIS SEQRES 31 B 423 ARG ILE LEU PRO PRO ASP SER GLY VAL TRP VAL CYS SER SEQRES 32 B 423 VAL ASN THR VAL ALA GLY MET VAL GLU LYS PRO PHE ASN SEQRES 33 B 423 ILE SER VAL LYS VAL LEU PRO MODRES 2GY7 ASN B 399 ASN GLYCOSYLATION SITE MODRES 2GY7 ASN B 158 ASN GLYCOSYLATION SITE MODRES 2GY7 ASN B 438 ASN GLYCOSYLATION SITE MODRES 2GY7 ASN B 140 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG C 3 14 HET NDG C 4 14 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET CA A 1 1 HET NAG B1140 14 HET SO4 B 3 5 HET SO4 B 4 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 3 NDG C8 H15 N O6 FORMUL 6 CA CA 2+ FORMUL 8 SO4 2(O4 S 2-) HELIX 1 1 ASP A 283 SER A 290 1 8 HELIX 2 2 LYS A 340 GLY A 345 1 6 HELIX 3 3 GLY A 356 GLN A 366 1 11 HELIX 4 4 LYS A 436 THR A 442 1 7 HELIX 5 5 PRO A 461 ASN A 465 5 5 HELIX 6 6 TRP A 474 LYS A 478 5 5 HELIX 7 7 PRO B 166 VAL B 170 5 5 HELIX 8 8 GLN B 182 ALA B 186 5 5 HELIX 9 9 GLY B 308 LYS B 312 5 5 HELIX 10 10 THR B 379 GLU B 381 5 3 HELIX 11 11 LEU B 415 SER B 419 5 5 SHEET 1 A 7 GLY A 296 THR A 301 0 SHEET 2 A 7 GLU A 308 CYS A 313 -1 O CYS A 313 N GLY A 296 SHEET 3 A 7 THR A 323 GLN A 326 -1 O ILE A 324 N TYR A 312 SHEET 4 A 7 ALA A 486 ILE A 491 -1 O MET A 489 N GLN A 326 SHEET 5 A 7 TYR A 369 ASP A 377 -1 N HIS A 374 O THR A 488 SHEET 6 A 7 ASN A 381 TYR A 391 -1 O SER A 385 N ILE A 373 SHEET 7 A 7 HIS A 402 GLY A 408 -1 O THR A 407 N LEU A 386 SHEET 1 B 6 THR B 75 ASP B 77 0 SHEET 2 B 6 ALA B 83 TRP B 88 -1 O LYS B 85 N THR B 75 SHEET 3 B 6 THR B 40 ALA B 46 -1 N LEU B 42 O VAL B 86 SHEET 4 B 6 LEU B 26 SER B 31 -1 N ILE B 29 O THR B 43 SHEET 5 B 6 TYR B 277 LEU B 281 -1 O VAL B 278 N ASN B 30 SHEET 6 B 6 GLY B 286 CYS B 289 -1 O GLY B 286 N LEU B 281 SHEET 1 C 4 LEU B 34 VAL B 35 0 SHEET 2 C 4 THR B 115 ARG B 119 1 O MET B 118 N VAL B 35 SHEET 3 C 4 GLY B 98 PHE B 101 -1 N TYR B 100 O THR B 115 SHEET 4 C 4 GLY B 58 ARG B 59 -1 N GLY B 58 O PHE B 101 SHEET 1 D 2 PHE B 124 LEU B 125 0 SHEET 2 D 2 LYS B 144 LYS B 145 -1 O LYS B 144 N LEU B 125 SHEET 1 E 5 THR B 132 ASP B 134 0 SHEET 2 E 5 ARG B 205 ARG B 209 1 O ILE B 207 N VAL B 133 SHEET 3 E 5 GLY B 187 TYR B 193 -1 N GLY B 187 O LEU B 206 SHEET 4 E 5 ALA B 153 LYS B 157 -1 N VAL B 154 O ARG B 192 SHEET 5 E 5 SER B 160 VAL B 165 -1 O VAL B 165 N ALA B 153 SHEET 1 F 2 VAL B 139 ASN B 140 0 SHEET 2 F 2 HIS B 177 LEU B 178 -1 O LEU B 178 N VAL B 139 SHEET 1 G 2 LYS B 215 TRP B 216 0 SHEET 2 G 2 HIS B 222 LEU B 223 -1 O HIS B 222 N TRP B 216 SHEET 1 H 2 VAL B 232 CYS B 233 0 SHEET 2 H 2 CYS B 240 ILE B 241 -1 O ILE B 241 N VAL B 232 SHEET 1 I 2 PHE B 246 MET B 247 0 SHEET 2 I 2 LYS B 253 ALA B 254 -1 O LYS B 253 N MET B 247 SHEET 1 J 2 THR B 259 PHE B 260 0 SHEET 2 J 2 GLU B 266 ARG B 267 -1 N GLU B 266 O PHE B 260 SHEET 1 K 2 CYS B 323 ASP B 324 0 SHEET 2 K 2 GLY B 328 CYS B 329 -1 O GLY B 328 N ASP B 324 SHEET 1 L 2 TRP B 335 GLN B 336 0 SHEET 2 L 2 ARG B 342 GLU B 343 -1 O ARG B 342 N GLN B 336 SHEET 1 M 2 GLY B 364 PHE B 366 0 SHEET 2 M 2 ILE B 411 ILE B 414 -1 O ILE B 411 N PHE B 366 SHEET 1 N 3 ILE B 369 ALA B 372 0 SHEET 2 N 3 SER B 405 ILE B 408 -1 O ALA B 407 N CYS B 370 SHEET 3 N 3 ASP B 397 PHE B 398 -1 N ASP B 397 O ILE B 408 SHEET 1 O 4 VAL B 392 LEU B 393 0 SHEET 2 O 4 MET B 383 VAL B 386 -1 N LEU B 385 O LEU B 393 SHEET 3 O 4 GLY B 420 THR B 428 -1 O SER B 425 N THR B 384 SHEET 4 O 4 GLY B 431 ILE B 439 -1 O VAL B 433 N VAL B 426 SSBOND 1 CYS A 284 CYS A 313 1555 1555 2.03 SSBOND 2 CYS A 433 CYS A 435 1555 1555 2.04 SSBOND 3 CYS A 437 CYS A 450 1555 1555 2.03 SSBOND 4 CYS B 44 CYS B 102 1555 1555 2.03 SSBOND 5 CYS B 211 CYS B 220 1555 1555 2.04 SSBOND 6 CYS B 224 CYS B 233 1555 1555 2.03 SSBOND 7 CYS B 227 CYS B 240 1555 1555 2.03 SSBOND 8 CYS B 242 CYS B 251 1555 1555 2.03 SSBOND 9 CYS B 255 CYS B 264 1555 1555 2.02 SSBOND 10 CYS B 268 CYS B 274 1555 1555 2.04 SSBOND 11 CYS B 280 CYS B 287 1555 1555 2.04 SSBOND 12 CYS B 289 CYS B 298 1555 1555 2.03 SSBOND 13 CYS B 302 CYS B 311 1555 1555 2.01 SSBOND 14 CYS B 315 CYS B 323 1555 1555 2.03 SSBOND 15 CYS B 317 CYS B 329 1555 1555 2.04 SSBOND 16 CYS B 331 CYS B 340 1555 1555 2.04 SSBOND 17 CYS B 370 CYS B 424 1555 1555 2.04 LINK OD1 ASN B 140 C1 NAG B1140 1555 1555 2.07 LINK ND2 ASN B 158 C1 NAG C 1 1555 1555 1.83 LINK ND2 ASN B 399 C1 NAG D 1 1555 1555 1.05 LINK ND2 ASN B 399 C2 NAG D 1 1555 1555 1.82 LINK ND2 ASN B 438 C1 NAG E 1 1555 1555 1.83 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.39 LINK O4 NAG C 2 C1 NAG C 3 1555 1555 1.39 LINK O4 NAG C 3 C1 NDG C 4 1555 1555 1.40 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.40 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.41 LINK CA CA A 1 OD1 ASP A 429 1555 1555 2.82 LINK CA CA A 1 OD2 ASP A 429 1555 1555 2.15 LINK CA CA A 1 OD1 ASP A 431 1555 1555 3.08 LINK CA CA A 1 OD2 ASP A 431 1555 1555 1.71 LINK CA CA A 1 O CYS A 433 1555 1555 3.38 LINK CA CA A 1 O CYS A 435 1555 1555 2.57 CRYST1 165.636 165.636 115.310 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006037 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006037 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008672 0.00000