data_2GYX
# 
_entry.id   2GYX 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.377 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   2GYX         pdb_00002gyx 10.2210/pdb2gyx/pdb 
NDB   DD0082       ?            ?                   
RCSB  RCSB037719   ?            ?                   
WWPDB D_1000037719 ?            ?                   
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        2GYX 
_pdbx_database_status.recvd_initial_deposition_date   2006-05-10 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.status_code_nmr_data            ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Lee, M.P.H.' 1 
'Neidle, S.'  2 
# 
_citation.id                        primary 
_citation.title                     
;Induced fit conformational changes of a "reversed amidine" heterocycle: optimized interactions in a DNA minor groove complex.
;
_citation.journal_abbrev            J.Am.Chem.Soc. 
_citation.journal_volume            129 
_citation.page_first                5688 
_citation.page_last                 5698 
_citation.year                      2007 
_citation.journal_id_ASTM           JACSAT 
_citation.country                   US 
_citation.journal_id_ISSN           0002-7863 
_citation.journal_id_CSD            0004 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   17425312 
_citation.pdbx_database_id_DOI      10.1021/ja069003n 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Munde, M.'    1 ? 
primary 'Lee, M.P.H.'  2 ? 
primary 'Neidle, S.'   3 ? 
primary 'Arafa, R.'    4 ? 
primary 'Boykin, D.W.' 5 ? 
primary 'Liu, Y.'      6 ? 
primary 'Bailly, C.'   7 ? 
primary 'Wilson, W.D.' 8 ? 
# 
_cell.entry_id           2GYX 
_cell.length_a           24.380 
_cell.length_b           40.102 
_cell.length_c           65.627 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
_cell.length_a_esd       ? 
_cell.length_b_esd       ? 
_cell.length_c_esd       ? 
_cell.angle_alpha_esd    ? 
_cell.angle_beta_esd     ? 
_cell.angle_gamma_esd    ? 
# 
_symmetry.entry_id                         2GYX 
_symmetry.space_group_name_H-M             'P 21 21 21' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                19 
_symmetry.space_group_name_Hall            ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn "5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'"                       3663.392 2  ? ? ? ? 
2 non-polymer syn 'MAGNESIUM ION'                                                      24.305   1  ? ? ? ? 
3 non-polymer syn "N,N'-(1H-PYRROLE-2,5-DIYLDI-4,1-PHENYLENE)DIBENZENECARBOXIMIDAMIDE" 455.553  1  ? ? ? ? 
4 water       nat water                                                                18.015   44 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CGCGAATTCGCG 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DC n 
1 2  DG n 
1 3  DC n 
1 4  DG n 
1 5  DA n 
1 6  DA n 
1 7  DT n 
1 8  DT n 
1 9  DC n 
1 10 DG n 
1 11 DC n 
1 12 DG n 
# 
_pdbx_entity_src_syn.entity_id              1 
_pdbx_entity_src_syn.pdbx_src_id            1 
_pdbx_entity_src_syn.pdbx_alt_source_flag   sample 
_pdbx_entity_src_syn.pdbx_beg_seq_num       ? 
_pdbx_entity_src_syn.pdbx_end_seq_num       ? 
_pdbx_entity_src_syn.organism_scientific    ? 
_pdbx_entity_src_syn.organism_common_name   ? 
_pdbx_entity_src_syn.ncbi_taxonomy_id       ? 
_pdbx_entity_src_syn.details                'AT-RICH REGION IN THE GENOME OF ORGANISMS.' 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    2GYX 
_struct_ref.pdbx_db_accession          2GYX 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 2GYX A 1 ? 12 ? 2GYX 1  ? 12 ? 1  12 
2 1 2GYX B 1 ? 12 ? 2GYX 13 ? 24 ? 13 24 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE"                                 ? 'C10 H14 N5 O6 P' 331.222 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"                                  ? 'C9 H14 N3 O7 P'  307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE"                                 ? 'C10 H14 N5 O7 P' 347.221 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"                                         ? 'C10 H15 N2 O8 P' 322.208 
HOH non-polymer   . WATER                                                                ? 'H2 O'            18.015  
MG  non-polymer   . 'MAGNESIUM ION'                                                      ? 'Mg 2'            24.305  
RKA non-polymer   . "N,N'-(1H-PYRROLE-2,5-DIYLDI-4,1-PHENYLENE)DIBENZENECARBOXIMIDAMIDE" ? 'C30 H25 N5'      455.553 
# 
_exptl.entry_id          2GYX 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      2.10 
_exptl_crystal.density_percent_sol   41.36 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, SITTING DROP' 
_exptl_crystal_grow.temp            293 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              7.00 
_exptl_crystal_grow.pdbx_details    
'MAGNESIUM CHLORIDE, MPD, DNA, COMPOUND DB 884, SODIUM CACODYLATE BUFFER, VAPOR DIFFUSION, SITTING DROP, temperature 293K, pH 7.00' 
_exptl_crystal_grow.pdbx_pH_range   . 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1 1 'MAGNESIUM CHLORIDE' ? ? ? 
1 2 1 MPD                  ? ? ? 
1 3 1 'SODIUM CACODYLATE'  ? ? ? 
1 4 1 H2O                  ? ? ? 
1 5 2 'MAGNESIUM CHLORIDE' ? ? ? 
1 6 2 MPD                  ? ? ? 
1 7 2 'SODIUM CACODYLATE'  ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           105.0 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               'IMAGE PLATE' 
_diffrn_detector.type                   'RIGAKU RAXIS IV' 
_diffrn_detector.pdbx_collection_date   2006-02-10 
_diffrn_detector.details                'OSMIC FOCUSING MIRROR SYSTEM' 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    'NI FILTER' 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   1.54178 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      'ROTATING ANODE' 
_diffrn_source.type                        'RIGAKU RU200' 
_diffrn_source.pdbx_synchrotron_site       ? 
_diffrn_source.pdbx_synchrotron_beamline   ? 
_diffrn_source.pdbx_wavelength             1.54178 
_diffrn_source.pdbx_wavelength_list        ? 
# 
_reflns.entry_id                     2GYX 
_reflns.observed_criterion_sigma_I   0.000 
_reflns.observed_criterion_sigma_F   ? 
_reflns.d_resolution_low             25.000 
_reflns.d_resolution_high            1.860 
_reflns.number_obs                   5536 
_reflns.number_all                   ? 
_reflns.percent_possible_obs         94.7 
_reflns.pdbx_Rmerge_I_obs            0.043 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        35.9306 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              2.850 
_reflns.R_free_details               ? 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
# 
_reflns_shell.d_res_high             1.86 
_reflns_shell.d_res_low              1.93 
_reflns_shell.percent_possible_all   91.3 
_reflns_shell.Rmerge_I_obs           0.214 
_reflns_shell.pdbx_Rsym_value        ? 
_reflns_shell.meanI_over_sigI_obs    4.3099 
_reflns_shell.pdbx_redundancy        ? 
_reflns_shell.percent_possible_obs   ? 
_reflns_shell.number_unique_all      ? 
_reflns_shell.number_measured_all    ? 
_reflns_shell.number_measured_obs    ? 
_reflns_shell.number_unique_obs      ? 
_reflns_shell.pdbx_chi_squared       ? 
_reflns_shell.pdbx_diffrn_id         ? 
_reflns_shell.pdbx_ordinal           1 
# 
_refine.entry_id                                 2GYX 
_refine.ls_number_reflns_obs                     ? 
_refine.ls_number_reflns_all                     5430 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          4.000 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             8.00 
_refine.ls_d_res_high                            1.86 
_refine.ls_percent_reflns_obs                    88.0 
_refine.ls_R_factor_obs                          0.23 
_refine.ls_R_factor_all                          0.236 
_refine.ls_R_factor_R_work                       ? 
_refine.ls_R_factor_R_free                       0.327 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 10.129 
_refine.ls_number_reflns_R_free                  550 
_refine.ls_number_parameters                     2267 
_refine.ls_number_restraints                     2584 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    'MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228' 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.pdbx_ls_cross_valid_method               THROUGHOUT 
_refine.details                                  ? 
_refine.pdbx_starting_model                      'DNA PART OF NDB ENTRY GDL009 OR PDB ENTRY 2DBE' 
_refine.pdbx_method_to_determine_struct          'MOLECULAR REPLACEMENT' 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       'ENGH & HUBER' 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.overall_SU_B                             ? 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_analyze.entry_id                        2GYX 
_refine_analyze.Luzzati_coordinate_error_obs    ? 
_refine_analyze.Luzzati_sigma_a_obs             ? 
_refine_analyze.Luzzati_d_res_low_obs           ? 
_refine_analyze.Luzzati_coordinate_error_free   ? 
_refine_analyze.Luzzati_sigma_a_free            ? 
_refine_analyze.Luzzati_d_res_low_free          ? 
_refine_analyze.number_disordered_residues      0 
_refine_analyze.occupancy_sum_hydrogen          0.00 
_refine_analyze.occupancy_sum_non_hydrogen      566.00 
_refine_analyze.pdbx_refine_id                  'X-RAY DIFFRACTION' 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   486 
_refine_hist.pdbx_number_atoms_ligand         42 
_refine_hist.number_atoms_solvent             38 
_refine_hist.number_atoms_total               566 
_refine_hist.d_res_high                       1.86 
_refine_hist.d_res_low                        8.00 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
s_bond_d               0.006 ? ? ? 'X-RAY DIFFRACTION' ? 
s_angle_d              0.025 ? ? ? 'X-RAY DIFFRACTION' ? 
s_similar_dist         0.000 ? ? ? 'X-RAY DIFFRACTION' ? 
s_from_restr_planes    0.012 ? ? ? 'X-RAY DIFFRACTION' ? 
s_zero_chiral_vol      0.000 ? ? ? 'X-RAY DIFFRACTION' ? 
s_non_zero_chiral_vol  0.005 ? ? ? 'X-RAY DIFFRACTION' ? 
s_anti_bump_dis_restr  0.013 ? ? ? 'X-RAY DIFFRACTION' ? 
s_rigid_bond_adp_cmpnt 0.000 ? ? ? 'X-RAY DIFFRACTION' ? 
s_similar_adp_cmpnt    0.071 ? ? ? 'X-RAY DIFFRACTION' ? 
s_approx_iso_adps      0.000 ? ? ? 'X-RAY DIFFRACTION' ? 
# 
_pdbx_refine.entry_id                                    2GYX 
_pdbx_refine.R_factor_all_no_cutoff                      0.236 
_pdbx_refine.R_factor_obs_no_cutoff                      0.23 
_pdbx_refine.free_R_factor_no_cutoff                     0.327 
_pdbx_refine.free_R_val_test_set_size_perc_no_cutoff     10.129 
_pdbx_refine.free_R_val_test_set_ct_no_cutoff            550 
_pdbx_refine.R_factor_all_4sig_cutoff                    0.225 
_pdbx_refine.R_factor_obs_4sig_cutoff                    0.219 
_pdbx_refine.free_R_factor_4sig_cutoff                   0.31 
_pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff   10.102 
_pdbx_refine.free_R_val_test_set_ct_4sig_cutoff          483 
_pdbx_refine.number_reflns_obs_4sig_cutoff               4781 
_pdbx_refine.pdbx_refine_id                              'X-RAY DIFFRACTION' 
_pdbx_refine.free_R_error_no_cutoff                      ? 
# 
_struct.entry_id                  2GYX 
_struct.title                     'Crystal structure of DB884- D(CGCGAATTCGCG)2 complex at 1.86 A resolution.' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        2GYX 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'B-TYPE DUPLEX DNA, DOUBLE HELIX, DODECAMER, COMPOUND DB 884., DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 2 ? 
D N N 3 ? 
E N N 4 ? 
F N N 4 ? 
# 
_struct_biol.id                    1 
_struct_biol.details               ? 
_struct_biol.pdbx_parent_biol_id   ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
metalc1  metalc ? ? C MG .  MG ? ? ? 1_555 E HOH .  O  ? ? A MG 26 A HOH 65 1_555 ? ? ? ? ? ? ?            2.124 ? ? 
metalc2  metalc ? ? C MG .  MG ? ? ? 1_555 E HOH .  O  ? ? A MG 26 A HOH 66 1_555 ? ? ? ? ? ? ?            2.125 ? ? 
metalc3  metalc ? ? C MG .  MG ? ? ? 1_555 E HOH .  O  ? ? A MG 26 A HOH 67 1_555 ? ? ? ? ? ? ?            2.124 ? ? 
metalc4  metalc ? ? C MG .  MG ? ? ? 1_555 F HOH .  O  ? ? A MG 26 B HOH 64 1_555 ? ? ? ? ? ? ?            2.130 ? ? 
metalc5  metalc ? ? C MG .  MG ? ? ? 1_555 F HOH .  O  ? ? A MG 26 B HOH 65 1_555 ? ? ? ? ? ? ?            2.122 ? ? 
metalc6  metalc ? ? C MG .  MG ? ? ? 1_555 F HOH .  O  ? ? A MG 26 B HOH 66 1_555 ? ? ? ? ? ? ?            2.122 ? ? 
hydrog1  hydrog ? ? A DC 1  N3 ? ? ? 1_555 B DG  12 N1 ? ? A DC 1  B DG  24 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ? ? A DC 1  N4 ? ? ? 1_555 B DG  12 O6 ? ? A DC 1  B DG  24 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ? ? A DC 1  O2 ? ? ? 1_555 B DG  12 N2 ? ? A DC 1  B DG  24 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ? ? A DG 2  N1 ? ? ? 1_555 B DC  11 N3 ? ? A DG 2  B DC  23 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ? ? A DG 2  N2 ? ? ? 1_555 B DC  11 O2 ? ? A DG 2  B DC  23 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ? ? A DG 2  O6 ? ? ? 1_555 B DC  11 N4 ? ? A DG 2  B DC  23 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ? ? A DC 3  N3 ? ? ? 1_555 B DG  10 N1 ? ? A DC 3  B DG  22 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ? ? A DC 3  N4 ? ? ? 1_555 B DG  10 O6 ? ? A DC 3  B DG  22 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ? ? A DC 3  O2 ? ? ? 1_555 B DG  10 N2 ? ? A DC 3  B DG  22 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ? ? A DG 4  N1 ? ? ? 1_555 B DC  9  N3 ? ? A DG 4  B DC  21 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ? ? A DG 4  N2 ? ? ? 1_555 B DC  9  O2 ? ? A DG 4  B DC  21 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ? ? A DG 4  O6 ? ? ? 1_555 B DC  9  N4 ? ? A DG 4  B DC  21 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ? ? A DA 5  N1 ? ? ? 1_555 B DT  8  N3 ? ? A DA 5  B DT  20 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ? ? A DA 5  N6 ? ? ? 1_555 B DT  8  O4 ? ? A DA 5  B DT  20 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ? ? A DA 6  N1 ? ? ? 1_555 B DT  7  N3 ? ? A DA 6  B DT  19 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ? ? A DA 6  N6 ? ? ? 1_555 B DT  7  O4 ? ? A DA 6  B DT  19 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ? ? A DT 7  N3 ? ? ? 1_555 B DA  6  N1 ? ? A DT 7  B DA  18 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ? ? A DT 7  O4 ? ? ? 1_555 B DA  6  N6 ? ? A DT 7  B DA  18 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog19 hydrog ? ? A DT 8  N3 ? ? ? 1_555 B DA  5  N1 ? ? A DT 8  B DA  17 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog20 hydrog ? ? A DT 8  O4 ? ? ? 1_555 B DA  5  N6 ? ? A DT 8  B DA  17 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog21 hydrog ? ? A DC 9  N3 ? ? ? 1_555 B DG  4  N1 ? ? A DC 9  B DG  16 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog22 hydrog ? ? A DC 9  N4 ? ? ? 1_555 B DG  4  O6 ? ? A DC 9  B DG  16 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog23 hydrog ? ? A DC 9  O2 ? ? ? 1_555 B DG  4  N2 ? ? A DC 9  B DG  16 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC  3  N3 ? ? A DG 10 B DC  15 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC  3  O2 ? ? A DG 10 B DC  15 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC  3  N4 ? ? A DG 10 B DC  15 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG  2  N1 ? ? A DC 11 B DG  14 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG  2  O6 ? ? A DC 11 B DG  14 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG  2  N2 ? ? A DC 11 B DG  14 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC  1  N3 ? ? A DG 12 B DC  13 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC  1  O2 ? ? A DG 12 B DC  13 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC  1  N4 ? ? A DG 12 B DC  13 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
metalc ? ? 
hydrog ? ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software A MG  26 ? 6  'BINDING SITE FOR RESIDUE MG A 26'  
AC2 Software A RKA 25 ? 12 'BINDING SITE FOR RESIDUE RKA A 25' 
1   ?        ? ?   ?  ? ?  ?                                   
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 6  HOH E .  ? HOH A 65 . ? 1_555 ? 
2  AC1 6  HOH E .  ? HOH A 66 . ? 1_555 ? 
3  AC1 6  HOH E .  ? HOH A 67 . ? 1_555 ? 
4  AC1 6  HOH F .  ? HOH B 64 . ? 1_555 ? 
5  AC1 6  HOH F .  ? HOH B 65 . ? 1_555 ? 
6  AC1 6  HOH F .  ? HOH B 66 . ? 1_555 ? 
7  AC2 12 DA  A 5  ? DA  A 5  . ? 1_555 ? 
8  AC2 12 DA  A 6  ? DA  A 6  . ? 1_555 ? 
9  AC2 12 DT  A 7  ? DT  A 7  . ? 1_555 ? 
10 AC2 12 DT  A 8  ? DT  A 8  . ? 1_555 ? 
11 AC2 12 DC  A 9  ? DC  A 9  . ? 1_555 ? 
12 AC2 12 DG  A 10 ? DG  A 10 . ? 1_555 ? 
13 AC2 12 HOH E .  ? HOH A 60 . ? 1_555 ? 
14 AC2 12 DA  B 6  ? DA  B 18 . ? 1_555 ? 
15 AC2 12 DT  B 7  ? DT  B 19 . ? 1_555 ? 
16 AC2 12 DT  B 8  ? DT  B 20 . ? 1_555 ? 
17 AC2 12 DC  B 9  ? DC  B 21 . ? 1_555 ? 
18 AC2 12 DG  B 10 ? DG  B 22 . ? 1_555 ? 
# 
_database_PDB_matrix.entry_id          2GYX 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_atom_sites.entry_id                    2GYX 
_atom_sites.fract_transf_matrix[1][1]   0.041017 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.024936 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.015238 
_atom_sites.fract_transf_vector[1]      0.000000 
_atom_sites.fract_transf_vector[2]      0.000000 
_atom_sites.fract_transf_vector[3]      0.000000 
# 
loop_
_atom_type.symbol 
C  
MG 
N  
O  
P  
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DC 1  1  1  DC C A . n 
A 1 2  DG 2  2  2  DG G A . n 
A 1 3  DC 3  3  3  DC C A . n 
A 1 4  DG 4  4  4  DG G A . n 
A 1 5  DA 5  5  5  DA A A . n 
A 1 6  DA 6  6  6  DA A A . n 
A 1 7  DT 7  7  7  DT T A . n 
A 1 8  DT 8  8  8  DT T A . n 
A 1 9  DC 9  9  9  DC C A . n 
A 1 10 DG 10 10 10 DG G A . n 
A 1 11 DC 11 11 11 DC C A . n 
A 1 12 DG 12 12 12 DG G A . n 
B 1 1  DC 1  13 13 DC C B . n 
B 1 2  DG 2  14 14 DG G B . n 
B 1 3  DC 3  15 15 DC C B . n 
B 1 4  DG 4  16 16 DG G B . n 
B 1 5  DA 5  17 17 DA A B . n 
B 1 6  DA 6  18 18 DA A B . n 
B 1 7  DT 7  19 19 DT T B . n 
B 1 8  DT 8  20 20 DT T B . n 
B 1 9  DC 9  21 21 DC C B . n 
B 1 10 DG 10 22 22 DG G B . n 
B 1 11 DC 11 23 23 DC C B . n 
B 1 12 DG 12 24 24 DG G B . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
C 2 MG  1  26 26 MG  MO6 A . 
D 3 RKA 1  25 25 RKA RKA A . 
E 4 HOH 1  27 27 HOH HOH A . 
E 4 HOH 2  28 28 HOH HOH A . 
E 4 HOH 3  29 29 HOH HOH A . 
E 4 HOH 4  32 32 HOH HOH A . 
E 4 HOH 5  33 33 HOH HOH A . 
E 4 HOH 6  36 36 HOH HOH A . 
E 4 HOH 7  37 37 HOH HOH A . 
E 4 HOH 8  38 38 HOH HOH A . 
E 4 HOH 9  39 39 HOH HOH A . 
E 4 HOH 10 41 41 HOH HOH A . 
E 4 HOH 11 42 42 HOH HOH A . 
E 4 HOH 12 43 43 HOH HOH A . 
E 4 HOH 13 45 45 HOH HOH A . 
E 4 HOH 14 46 46 HOH HOH A . 
E 4 HOH 15 48 48 HOH HOH A . 
E 4 HOH 16 51 51 HOH HOH A . 
E 4 HOH 17 52 52 HOH HOH A . 
E 4 HOH 18 53 53 HOH HOH A . 
E 4 HOH 19 54 54 HOH HOH A . 
E 4 HOH 20 57 57 HOH HOH A . 
E 4 HOH 21 58 58 HOH HOH A . 
E 4 HOH 22 60 60 HOH HOH A . 
E 4 HOH 23 61 61 HOH HOH A . 
E 4 HOH 24 62 62 HOH HOH A . 
E 4 HOH 25 64 64 HOH HOH A . 
E 4 HOH 26 65 26 HOH MO6 A . 
E 4 HOH 27 66 26 HOH MO6 A . 
E 4 HOH 28 67 26 HOH MO6 A . 
F 4 HOH 1  30 30 HOH HOH B . 
F 4 HOH 2  31 31 HOH HOH B . 
F 4 HOH 3  34 34 HOH HOH B . 
F 4 HOH 4  35 35 HOH HOH B . 
F 4 HOH 5  40 40 HOH HOH B . 
F 4 HOH 6  44 44 HOH HOH B . 
F 4 HOH 7  47 47 HOH HOH B . 
F 4 HOH 8  49 49 HOH HOH B . 
F 4 HOH 9  50 50 HOH HOH B . 
F 4 HOH 10 55 55 HOH HOH B . 
F 4 HOH 11 56 56 HOH HOH B . 
F 4 HOH 12 59 59 HOH HOH B . 
F 4 HOH 13 63 63 HOH HOH B . 
F 4 HOH 14 64 26 HOH MO6 B . 
F 4 HOH 15 65 26 HOH MO6 B . 
F 4 HOH 16 66 26 HOH MO6 B . 
# 
_struct_site_keywords.site_id   1 
_struct_site_keywords.text      'minor groove binder' 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E,F 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
loop_
_pdbx_struct_conn_angle.id 
_pdbx_struct_conn_angle.ptnr1_label_atom_id 
_pdbx_struct_conn_angle.ptnr1_label_alt_id 
_pdbx_struct_conn_angle.ptnr1_label_asym_id 
_pdbx_struct_conn_angle.ptnr1_label_comp_id 
_pdbx_struct_conn_angle.ptnr1_label_seq_id 
_pdbx_struct_conn_angle.ptnr1_auth_atom_id 
_pdbx_struct_conn_angle.ptnr1_auth_asym_id 
_pdbx_struct_conn_angle.ptnr1_auth_comp_id 
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr1_symmetry 
_pdbx_struct_conn_angle.ptnr2_label_atom_id 
_pdbx_struct_conn_angle.ptnr2_label_alt_id 
_pdbx_struct_conn_angle.ptnr2_label_asym_id 
_pdbx_struct_conn_angle.ptnr2_label_comp_id 
_pdbx_struct_conn_angle.ptnr2_label_seq_id 
_pdbx_struct_conn_angle.ptnr2_auth_atom_id 
_pdbx_struct_conn_angle.ptnr2_auth_asym_id 
_pdbx_struct_conn_angle.ptnr2_auth_comp_id 
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr2_symmetry 
_pdbx_struct_conn_angle.ptnr3_label_atom_id 
_pdbx_struct_conn_angle.ptnr3_label_alt_id 
_pdbx_struct_conn_angle.ptnr3_label_asym_id 
_pdbx_struct_conn_angle.ptnr3_label_comp_id 
_pdbx_struct_conn_angle.ptnr3_label_seq_id 
_pdbx_struct_conn_angle.ptnr3_auth_atom_id 
_pdbx_struct_conn_angle.ptnr3_auth_asym_id 
_pdbx_struct_conn_angle.ptnr3_auth_comp_id 
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr3_symmetry 
_pdbx_struct_conn_angle.value 
_pdbx_struct_conn_angle.value_esd 
1  O ? E HOH . ? A HOH 65 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 66 ? 1_555 89.4  ? 
2  O ? E HOH . ? A HOH 65 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 67 ? 1_555 89.6  ? 
3  O ? E HOH . ? A HOH 66 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 67 ? 1_555 89.9  ? 
4  O ? E HOH . ? A HOH 65 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 64 ? 1_555 90.6  ? 
5  O ? E HOH . ? A HOH 66 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 64 ? 1_555 179.9 ? 
6  O ? E HOH . ? A HOH 67 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 64 ? 1_555 90.1  ? 
7  O ? E HOH . ? A HOH 65 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 65 ? 1_555 179.8 ? 
8  O ? E HOH . ? A HOH 66 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 65 ? 1_555 90.4  ? 
9  O ? E HOH . ? A HOH 67 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 65 ? 1_555 90.4  ? 
10 O ? F HOH . ? B HOH 64 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 65 ? 1_555 89.6  ? 
11 O ? E HOH . ? A HOH 65 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 66 ? 1_555 90.4  ? 
12 O ? E HOH . ? A HOH 66 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 66 ? 1_555 90.3  ? 
13 O ? E HOH . ? A HOH 67 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 66 ? 1_555 179.8 ? 
14 O ? F HOH . ? B HOH 64 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 66 ? 1_555 89.6  ? 
15 O ? F HOH . ? B HOH 65 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 66 ? 1_555 89.6  ? 
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2007-05-22 
2 'Structure model' 1 1 2007-10-27 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2017-10-18 
5 'Structure model' 1 4 2019-07-24 
6 'Structure model' 1 5 2023-08-30 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Refinement description'    
4 5 'Structure model' 'Data collection'           
5 5 'Structure model' 'Refinement description'    
6 6 'Structure model' 'Data collection'           
7 6 'Structure model' 'Database references'       
8 6 'Structure model' 'Derived calculations'      
9 6 'Structure model' 'Refinement description'    
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' software                      
2 5 'Structure model' software                      
3 6 'Structure model' chem_comp_atom                
4 6 'Structure model' chem_comp_bond                
5 6 'Structure model' database_2                    
6 6 'Structure model' pdbx_initial_refinement_model 
7 6 'Structure model' pdbx_struct_conn_angle        
8 6 'Structure model' struct_conn                   
9 6 'Structure model' struct_site                   
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  5 'Structure model' '_software.classification'                    
2  5 'Structure model' '_software.name'                              
3  6 'Structure model' '_database_2.pdbx_DOI'                        
4  6 'Structure model' '_database_2.pdbx_database_accession'         
5  6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id'  
6  6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'   
7  6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 
8  6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id'  
9  6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'   
10 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 
11 6 'Structure model' '_pdbx_struct_conn_angle.value'               
12 6 'Structure model' '_struct_conn.pdbx_dist_value'                
13 6 'Structure model' '_struct_conn.ptnr2_auth_asym_id'             
14 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id'              
15 6 'Structure model' '_struct_conn.ptnr2_label_asym_id'            
16 6 'Structure model' '_struct_site.pdbx_auth_asym_id'              
17 6 'Structure model' '_struct_site.pdbx_auth_comp_id'              
18 6 'Structure model' '_struct_site.pdbx_auth_seq_id'               
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
SHELXL-97 refinement       . ? 1 
CNS       refinement       . ? 2 
DENZO     'data reduction' . ? 3 
CNS       phasing          . ? 4 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1 1 "O4'" A DA 5  ? ? "C1'" A DA 5  ? ? N9    A DA 5  ? ? 103.51 108.00 -4.49 0.70 N 
2 1 "O4'" A DT 7  ? ? "C1'" A DT 7  ? ? N1    A DT 7  ? ? 103.53 108.00 -4.47 0.70 N 
3 1 "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? "C1'" A DG 10 ? ? 97.20  102.40 -5.20 0.80 N 
4 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9    A DG 10 ? ? 110.45 108.30 2.15  0.30 N 
5 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9    B DA 18 ? ? 103.73 108.00 -4.27 0.70 N 
6 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1    B DT 19 ? ? 101.38 108.00 -6.62 0.70 N 
7 1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1    B DC 21 ? ? 100.88 108.00 -7.12 0.70 N 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
DA  OP3    O  N N 1   
DA  P      P  N N 2   
DA  OP1    O  N N 3   
DA  OP2    O  N N 4   
DA  "O5'"  O  N N 5   
DA  "C5'"  C  N N 6   
DA  "C4'"  C  N R 7   
DA  "O4'"  O  N N 8   
DA  "C3'"  C  N S 9   
DA  "O3'"  O  N N 10  
DA  "C2'"  C  N N 11  
DA  "C1'"  C  N R 12  
DA  N9     N  Y N 13  
DA  C8     C  Y N 14  
DA  N7     N  Y N 15  
DA  C5     C  Y N 16  
DA  C6     C  Y N 17  
DA  N6     N  N N 18  
DA  N1     N  Y N 19  
DA  C2     C  Y N 20  
DA  N3     N  Y N 21  
DA  C4     C  Y N 22  
DA  HOP3   H  N N 23  
DA  HOP2   H  N N 24  
DA  "H5'"  H  N N 25  
DA  "H5''" H  N N 26  
DA  "H4'"  H  N N 27  
DA  "H3'"  H  N N 28  
DA  "HO3'" H  N N 29  
DA  "H2'"  H  N N 30  
DA  "H2''" H  N N 31  
DA  "H1'"  H  N N 32  
DA  H8     H  N N 33  
DA  H61    H  N N 34  
DA  H62    H  N N 35  
DA  H2     H  N N 36  
DC  OP3    O  N N 37  
DC  P      P  N N 38  
DC  OP1    O  N N 39  
DC  OP2    O  N N 40  
DC  "O5'"  O  N N 41  
DC  "C5'"  C  N N 42  
DC  "C4'"  C  N R 43  
DC  "O4'"  O  N N 44  
DC  "C3'"  C  N S 45  
DC  "O3'"  O  N N 46  
DC  "C2'"  C  N N 47  
DC  "C1'"  C  N R 48  
DC  N1     N  N N 49  
DC  C2     C  N N 50  
DC  O2     O  N N 51  
DC  N3     N  N N 52  
DC  C4     C  N N 53  
DC  N4     N  N N 54  
DC  C5     C  N N 55  
DC  C6     C  N N 56  
DC  HOP3   H  N N 57  
DC  HOP2   H  N N 58  
DC  "H5'"  H  N N 59  
DC  "H5''" H  N N 60  
DC  "H4'"  H  N N 61  
DC  "H3'"  H  N N 62  
DC  "HO3'" H  N N 63  
DC  "H2'"  H  N N 64  
DC  "H2''" H  N N 65  
DC  "H1'"  H  N N 66  
DC  H41    H  N N 67  
DC  H42    H  N N 68  
DC  H5     H  N N 69  
DC  H6     H  N N 70  
DG  OP3    O  N N 71  
DG  P      P  N N 72  
DG  OP1    O  N N 73  
DG  OP2    O  N N 74  
DG  "O5'"  O  N N 75  
DG  "C5'"  C  N N 76  
DG  "C4'"  C  N R 77  
DG  "O4'"  O  N N 78  
DG  "C3'"  C  N S 79  
DG  "O3'"  O  N N 80  
DG  "C2'"  C  N N 81  
DG  "C1'"  C  N R 82  
DG  N9     N  Y N 83  
DG  C8     C  Y N 84  
DG  N7     N  Y N 85  
DG  C5     C  Y N 86  
DG  C6     C  N N 87  
DG  O6     O  N N 88  
DG  N1     N  N N 89  
DG  C2     C  N N 90  
DG  N2     N  N N 91  
DG  N3     N  N N 92  
DG  C4     C  Y N 93  
DG  HOP3   H  N N 94  
DG  HOP2   H  N N 95  
DG  "H5'"  H  N N 96  
DG  "H5''" H  N N 97  
DG  "H4'"  H  N N 98  
DG  "H3'"  H  N N 99  
DG  "HO3'" H  N N 100 
DG  "H2'"  H  N N 101 
DG  "H2''" H  N N 102 
DG  "H1'"  H  N N 103 
DG  H8     H  N N 104 
DG  H1     H  N N 105 
DG  H21    H  N N 106 
DG  H22    H  N N 107 
DT  OP3    O  N N 108 
DT  P      P  N N 109 
DT  OP1    O  N N 110 
DT  OP2    O  N N 111 
DT  "O5'"  O  N N 112 
DT  "C5'"  C  N N 113 
DT  "C4'"  C  N R 114 
DT  "O4'"  O  N N 115 
DT  "C3'"  C  N S 116 
DT  "O3'"  O  N N 117 
DT  "C2'"  C  N N 118 
DT  "C1'"  C  N R 119 
DT  N1     N  N N 120 
DT  C2     C  N N 121 
DT  O2     O  N N 122 
DT  N3     N  N N 123 
DT  C4     C  N N 124 
DT  O4     O  N N 125 
DT  C5     C  N N 126 
DT  C7     C  N N 127 
DT  C6     C  N N 128 
DT  HOP3   H  N N 129 
DT  HOP2   H  N N 130 
DT  "H5'"  H  N N 131 
DT  "H5''" H  N N 132 
DT  "H4'"  H  N N 133 
DT  "H3'"  H  N N 134 
DT  "HO3'" H  N N 135 
DT  "H2'"  H  N N 136 
DT  "H2''" H  N N 137 
DT  "H1'"  H  N N 138 
DT  H3     H  N N 139 
DT  H71    H  N N 140 
DT  H72    H  N N 141 
DT  H73    H  N N 142 
DT  H6     H  N N 143 
HOH O      O  N N 144 
HOH H1     H  N N 145 
HOH H2     H  N N 146 
MG  MG     MG N N 147 
RKA C1     C  Y N 148 
RKA C2     C  Y N 149 
RKA C3     C  Y N 150 
RKA N4     N  Y N 151 
RKA C5     C  Y N 152 
RKA C6     C  Y N 153 
RKA C7     C  Y N 154 
RKA C8     C  Y N 155 
RKA C9     C  Y N 156 
RKA C10    C  Y N 157 
RKA C11    C  Y N 158 
RKA C12    C  Y N 159 
RKA C13    C  Y N 160 
RKA C14    C  Y N 161 
RKA C15    C  Y N 162 
RKA C16    C  Y N 163 
RKA C17    C  Y N 164 
RKA N18    N  N N 165 
RKA C19    C  N N 166 
RKA N20    N  N N 167 
RKA C21    C  Y N 168 
RKA C22    C  Y N 169 
RKA C23    C  Y N 170 
RKA C24    C  Y N 171 
RKA C25    C  Y N 172 
RKA C26    C  Y N 173 
RKA N27    N  N N 174 
RKA C28    C  N N 175 
RKA N29    N  N N 176 
RKA C30    C  Y N 177 
RKA C31    C  Y N 178 
RKA C32    C  Y N 179 
RKA C33    C  Y N 180 
RKA C34    C  Y N 181 
RKA C35    C  Y N 182 
RKA H1     H  N N 183 
RKA H2     H  N N 184 
RKA HN4    H  N N 185 
RKA H7     H  N N 186 
RKA H8     H  N N 187 
RKA H10    H  N N 188 
RKA H11    H  N N 189 
RKA H13    H  N N 190 
RKA H14    H  N N 191 
RKA H16    H  N N 192 
RKA H17    H  N N 193 
RKA HN18   H  N N 194 
RKA HN20   H  N N 195 
RKA H22    H  N N 196 
RKA H23    H  N N 197 
RKA H24    H  N N 198 
RKA H25    H  N N 199 
RKA H26    H  N N 200 
RKA HN27   H  N N 201 
RKA HN29   H  N N 202 
RKA H31    H  N N 203 
RKA H32    H  N N 204 
RKA H33    H  N N 205 
RKA H34    H  N N 206 
RKA H35    H  N N 207 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DA  OP3   P      sing N N 1   
DA  OP3   HOP3   sing N N 2   
DA  P     OP1    doub N N 3   
DA  P     OP2    sing N N 4   
DA  P     "O5'"  sing N N 5   
DA  OP2   HOP2   sing N N 6   
DA  "O5'" "C5'"  sing N N 7   
DA  "C5'" "C4'"  sing N N 8   
DA  "C5'" "H5'"  sing N N 9   
DA  "C5'" "H5''" sing N N 10  
DA  "C4'" "O4'"  sing N N 11  
DA  "C4'" "C3'"  sing N N 12  
DA  "C4'" "H4'"  sing N N 13  
DA  "O4'" "C1'"  sing N N 14  
DA  "C3'" "O3'"  sing N N 15  
DA  "C3'" "C2'"  sing N N 16  
DA  "C3'" "H3'"  sing N N 17  
DA  "O3'" "HO3'" sing N N 18  
DA  "C2'" "C1'"  sing N N 19  
DA  "C2'" "H2'"  sing N N 20  
DA  "C2'" "H2''" sing N N 21  
DA  "C1'" N9     sing N N 22  
DA  "C1'" "H1'"  sing N N 23  
DA  N9    C8     sing Y N 24  
DA  N9    C4     sing Y N 25  
DA  C8    N7     doub Y N 26  
DA  C8    H8     sing N N 27  
DA  N7    C5     sing Y N 28  
DA  C5    C6     sing Y N 29  
DA  C5    C4     doub Y N 30  
DA  C6    N6     sing N N 31  
DA  C6    N1     doub Y N 32  
DA  N6    H61    sing N N 33  
DA  N6    H62    sing N N 34  
DA  N1    C2     sing Y N 35  
DA  C2    N3     doub Y N 36  
DA  C2    H2     sing N N 37  
DA  N3    C4     sing Y N 38  
DC  OP3   P      sing N N 39  
DC  OP3   HOP3   sing N N 40  
DC  P     OP1    doub N N 41  
DC  P     OP2    sing N N 42  
DC  P     "O5'"  sing N N 43  
DC  OP2   HOP2   sing N N 44  
DC  "O5'" "C5'"  sing N N 45  
DC  "C5'" "C4'"  sing N N 46  
DC  "C5'" "H5'"  sing N N 47  
DC  "C5'" "H5''" sing N N 48  
DC  "C4'" "O4'"  sing N N 49  
DC  "C4'" "C3'"  sing N N 50  
DC  "C4'" "H4'"  sing N N 51  
DC  "O4'" "C1'"  sing N N 52  
DC  "C3'" "O3'"  sing N N 53  
DC  "C3'" "C2'"  sing N N 54  
DC  "C3'" "H3'"  sing N N 55  
DC  "O3'" "HO3'" sing N N 56  
DC  "C2'" "C1'"  sing N N 57  
DC  "C2'" "H2'"  sing N N 58  
DC  "C2'" "H2''" sing N N 59  
DC  "C1'" N1     sing N N 60  
DC  "C1'" "H1'"  sing N N 61  
DC  N1    C2     sing N N 62  
DC  N1    C6     sing N N 63  
DC  C2    O2     doub N N 64  
DC  C2    N3     sing N N 65  
DC  N3    C4     doub N N 66  
DC  C4    N4     sing N N 67  
DC  C4    C5     sing N N 68  
DC  N4    H41    sing N N 69  
DC  N4    H42    sing N N 70  
DC  C5    C6     doub N N 71  
DC  C5    H5     sing N N 72  
DC  C6    H6     sing N N 73  
DG  OP3   P      sing N N 74  
DG  OP3   HOP3   sing N N 75  
DG  P     OP1    doub N N 76  
DG  P     OP2    sing N N 77  
DG  P     "O5'"  sing N N 78  
DG  OP2   HOP2   sing N N 79  
DG  "O5'" "C5'"  sing N N 80  
DG  "C5'" "C4'"  sing N N 81  
DG  "C5'" "H5'"  sing N N 82  
DG  "C5'" "H5''" sing N N 83  
DG  "C4'" "O4'"  sing N N 84  
DG  "C4'" "C3'"  sing N N 85  
DG  "C4'" "H4'"  sing N N 86  
DG  "O4'" "C1'"  sing N N 87  
DG  "C3'" "O3'"  sing N N 88  
DG  "C3'" "C2'"  sing N N 89  
DG  "C3'" "H3'"  sing N N 90  
DG  "O3'" "HO3'" sing N N 91  
DG  "C2'" "C1'"  sing N N 92  
DG  "C2'" "H2'"  sing N N 93  
DG  "C2'" "H2''" sing N N 94  
DG  "C1'" N9     sing N N 95  
DG  "C1'" "H1'"  sing N N 96  
DG  N9    C8     sing Y N 97  
DG  N9    C4     sing Y N 98  
DG  C8    N7     doub Y N 99  
DG  C8    H8     sing N N 100 
DG  N7    C5     sing Y N 101 
DG  C5    C6     sing N N 102 
DG  C5    C4     doub Y N 103 
DG  C6    O6     doub N N 104 
DG  C6    N1     sing N N 105 
DG  N1    C2     sing N N 106 
DG  N1    H1     sing N N 107 
DG  C2    N2     sing N N 108 
DG  C2    N3     doub N N 109 
DG  N2    H21    sing N N 110 
DG  N2    H22    sing N N 111 
DG  N3    C4     sing N N 112 
DT  OP3   P      sing N N 113 
DT  OP3   HOP3   sing N N 114 
DT  P     OP1    doub N N 115 
DT  P     OP2    sing N N 116 
DT  P     "O5'"  sing N N 117 
DT  OP2   HOP2   sing N N 118 
DT  "O5'" "C5'"  sing N N 119 
DT  "C5'" "C4'"  sing N N 120 
DT  "C5'" "H5'"  sing N N 121 
DT  "C5'" "H5''" sing N N 122 
DT  "C4'" "O4'"  sing N N 123 
DT  "C4'" "C3'"  sing N N 124 
DT  "C4'" "H4'"  sing N N 125 
DT  "O4'" "C1'"  sing N N 126 
DT  "C3'" "O3'"  sing N N 127 
DT  "C3'" "C2'"  sing N N 128 
DT  "C3'" "H3'"  sing N N 129 
DT  "O3'" "HO3'" sing N N 130 
DT  "C2'" "C1'"  sing N N 131 
DT  "C2'" "H2'"  sing N N 132 
DT  "C2'" "H2''" sing N N 133 
DT  "C1'" N1     sing N N 134 
DT  "C1'" "H1'"  sing N N 135 
DT  N1    C2     sing N N 136 
DT  N1    C6     sing N N 137 
DT  C2    O2     doub N N 138 
DT  C2    N3     sing N N 139 
DT  N3    C4     sing N N 140 
DT  N3    H3     sing N N 141 
DT  C4    O4     doub N N 142 
DT  C4    C5     sing N N 143 
DT  C5    C7     sing N N 144 
DT  C5    C6     doub N N 145 
DT  C7    H71    sing N N 146 
DT  C7    H72    sing N N 147 
DT  C7    H73    sing N N 148 
DT  C6    H6     sing N N 149 
HOH O     H1     sing N N 150 
HOH O     H2     sing N N 151 
RKA C1    C2     sing Y N 152 
RKA C1    C5     doub Y N 153 
RKA C1    H1     sing N N 154 
RKA C2    C3     doub Y N 155 
RKA C2    H2     sing N N 156 
RKA C3    N4     sing Y N 157 
RKA C3    C6     sing Y N 158 
RKA N4    C5     sing Y N 159 
RKA N4    HN4    sing N N 160 
RKA C5    C12    sing Y N 161 
RKA C6    C7     sing Y N 162 
RKA C6    C11    doub Y N 163 
RKA C7    C8     doub Y N 164 
RKA C7    H7     sing N N 165 
RKA C8    C9     sing Y N 166 
RKA C8    H8     sing N N 167 
RKA C9    C10    doub Y N 168 
RKA C9    N27    sing N N 169 
RKA C10   C11    sing Y N 170 
RKA C10   H10    sing N N 171 
RKA C11   H11    sing N N 172 
RKA C12   C13    doub Y N 173 
RKA C12   C17    sing Y N 174 
RKA C13   C14    sing Y N 175 
RKA C13   H13    sing N N 176 
RKA C14   C15    doub Y N 177 
RKA C14   H14    sing N N 178 
RKA C15   C16    sing Y N 179 
RKA C15   N18    sing N N 180 
RKA C16   C17    doub Y N 181 
RKA C16   H16    sing N N 182 
RKA C17   H17    sing N N 183 
RKA N18   C19    sing N N 184 
RKA N18   HN18   sing N N 185 
RKA C19   N20    doub N Z 186 
RKA C19   C21    sing N N 187 
RKA N20   HN20   sing N N 188 
RKA C21   C22    doub Y N 189 
RKA C21   C26    sing Y N 190 
RKA C22   C23    sing Y N 191 
RKA C22   H22    sing N N 192 
RKA C23   C24    doub Y N 193 
RKA C23   H23    sing N N 194 
RKA C24   C25    sing Y N 195 
RKA C24   H24    sing N N 196 
RKA C25   C26    doub Y N 197 
RKA C25   H25    sing N N 198 
RKA C26   H26    sing N N 199 
RKA N27   C28    sing N N 200 
RKA N27   HN27   sing N N 201 
RKA C28   N29    doub N E 202 
RKA C28   C30    sing N N 203 
RKA N29   HN29   sing N N 204 
RKA C30   C31    doub Y N 205 
RKA C30   C35    sing Y N 206 
RKA C31   C32    sing Y N 207 
RKA C31   H31    sing N N 208 
RKA C32   C33    doub Y N 209 
RKA C32   H32    sing N N 210 
RKA C33   C34    sing Y N 211 
RKA C33   H33    sing N N 212 
RKA C34   C35    doub Y N 213 
RKA C34   H34    sing N N 214 
RKA C35   H35    sing N N 215 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
2GYX 'double helix'        
2GYX 'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 1  1_555 B DG 12 1_555 0.534  -0.313 0.072  3.981  -18.327 0.853  1  A_DC1:DG24_B  A 1  ? B 24 ? 19 1 
1 A DG 2  1_555 B DC 11 1_555 -0.085 -0.177 0.219  -0.768 -12.813 -2.864 2  A_DG2:DC23_B  A 2  ? B 23 ? 19 1 
1 A DC 3  1_555 B DG 10 1_555 0.339  -0.129 0.062  -6.041 -4.909  2.924  3  A_DC3:DG22_B  A 3  ? B 22 ? 19 1 
1 A DG 4  1_555 B DC 9  1_555 -0.274 -0.084 -0.240 5.066  -13.117 0.263  4  A_DG4:DC21_B  A 4  ? B 21 ? 19 1 
1 A DA 5  1_555 B DT 8  1_555 0.012  -0.146 0.014  5.918  -19.238 4.973  5  A_DA5:DT20_B  A 5  ? B 20 ? 20 1 
1 A DA 6  1_555 B DT 7  1_555 0.327  -0.185 0.016  -1.378 -17.495 6.398  6  A_DA6:DT19_B  A 6  ? B 19 ? 20 1 
1 A DT 7  1_555 B DA 6  1_555 0.057  -0.191 0.040  -4.772 -18.680 5.575  7  A_DT7:DA18_B  A 7  ? B 18 ? 20 1 
1 A DT 8  1_555 B DA 5  1_555 -0.306 -0.159 -0.239 -1.908 -18.156 5.840  8  A_DT8:DA17_B  A 8  ? B 17 ? 20 1 
1 A DC 9  1_555 B DG 4  1_555 0.145  -0.105 -0.150 -2.609 -12.467 -1.493 9  A_DC9:DG16_B  A 9  ? B 16 ? 19 1 
1 A DG 10 1_555 B DC 3  1_555 0.286  -0.311 0.261  10.750 -8.838  -2.476 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 
1 A DC 11 1_555 B DG 2  1_555 0.015  -0.299 0.422  5.056  -19.807 -8.613 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 
1 A DG 12 1_555 B DC 1  1_555 -0.591 -0.216 -0.684 6.397  24.939  -4.795 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 1  1_555 B DG 12 1_555 A DG 2  1_555 B DC 11 1_555 -0.155 0.095  3.444 0.991  6.499   33.029 -0.955 0.438  3.394 11.291  
-1.722  33.659 1  AA_DC1DG2:DC23DG24_BB   A 1  ? B 24 ? A 2  ? B 23 ? 
1 A DG 2  1_555 B DC 11 1_555 A DC 3  1_555 B DG 10 1_555 0.806  0.687  3.422 2.546  -4.198  42.785 1.368  -0.836 3.383 -5.732  
-3.476  43.053 2  AA_DG2DC3:DG22DC23_BB   A 2  ? B 23 ? A 3  ? B 22 ? 
1 A DC 3  1_555 B DG 10 1_555 A DG 4  1_555 B DC 9  1_555 -0.449 0.771  3.235 4.388  10.805  25.158 -1.079 2.030  3.170 23.277  
-9.452  27.690 3  AA_DC3DG4:DC21DG22_BB   A 3  ? B 22 ? A 4  ? B 21 ? 
1 A DG 4  1_555 B DC 9  1_555 A DA 5  1_555 B DT 8  1_555 0.278  0.278  3.188 -1.501 3.688   36.748 -0.047 -0.636 3.186 5.829   
2.372   36.956 4  AA_DG4DA5:DT20DC21_BB   A 4  ? B 21 ? A 5  ? B 20 ? 
1 A DA 5  1_555 B DT 8  1_555 A DA 6  1_555 B DT 7  1_555 -0.238 -0.112 3.371 -1.636 2.985   36.592 -0.597 0.148  3.359 4.741   
2.599   36.745 5  AA_DA5DA6:DT19DT20_BB   A 5  ? B 20 ? A 6  ? B 19 ? 
1 A DA 6  1_555 B DT 7  1_555 A DT 7  1_555 B DA 6  1_555 0.045  -0.653 3.247 0.955  -1.363  33.036 -0.917 0.081  3.271 -2.394  
-1.677  33.077 6  AA_DA6DT7:DA18DT19_BB   A 6  ? B 19 ? A 7  ? B 18 ? 
1 A DT 7  1_555 B DA 6  1_555 A DT 8  1_555 B DA 5  1_555 0.008  0.028  3.086 2.875  0.703   34.893 -0.053 0.394  3.077 1.171   
-4.783  35.014 7  AA_DT7DT8:DA17DA18_BB   A 7  ? B 18 ? A 8  ? B 17 ? 
1 A DT 8  1_555 B DA 5  1_555 A DC 9  1_555 B DG 4  1_555 -0.231 0.162  3.301 1.665  -0.164  39.435 0.259  0.540  3.288 -0.244  
-2.466  39.469 8  AA_DT8DC9:DG16DA17_BB   A 8  ? B 17 ? A 9  ? B 16 ? 
1 A DC 9  1_555 B DG 4  1_555 A DG 10 1_555 B DC 3  1_555 0.457  1.021  3.165 -3.994 9.026   30.880 0.232  -1.527 3.244 16.433  
7.272   32.383 9  AA_DC9DG10:DC15DG16_BB  A 9  ? B 16 ? A 10 ? B 15 ? 
1 A DG 10 1_555 B DC 3  1_555 A DC 11 1_555 B DG 2  1_555 -1.227 0.513  3.508 -6.142 -14.401 39.952 2.256  1.019  3.288 -20.164 
8.600   42.793 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 
1 A DC 11 1_555 B DG 2  1_555 A DG 12 1_555 B DC 1  1_555 1.468  0.506  3.648 9.476  -12.506 33.587 2.742  -0.842 3.523 -20.321 
-15.398 36.976 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 'MAGNESIUM ION'                                                      MG  
3 "N,N'-(1H-PYRROLE-2,5-DIYLDI-4,1-PHENYLENE)DIBENZENECARBOXIMIDAMIDE" RKA 
4 water                                                                HOH 
# 
_pdbx_initial_refinement_model.id               1 
_pdbx_initial_refinement_model.entity_id_list   ? 
_pdbx_initial_refinement_model.type             'experimental model' 
_pdbx_initial_refinement_model.source_name      PDB 
_pdbx_initial_refinement_model.accession_code   2DBE 
_pdbx_initial_refinement_model.details          'DNA PART OF NDB ENTRY GDL009 OR PDB ENTRY 2DBE' 
#