HEADER HYDROLASE 10-MAY-06 2GZ5 TITLE HUMAN TYPE 1 METHIONINE AMINOPEPTIDASE IN COMPLEX WITH OVALICIN AT 1.1 TITLE 2 ANG COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE AMINOPEPTIDASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: METAP 1, MAP 1, PEPTIDASE M 1; COMPND 5 EC: 3.4.11.18; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: METAP1, KIAA0094; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS AMINOPEPTIDASE, PITA-BREAD FOLD, OVALICIN, ANGIOGENESIS, COVALENT KEYWDS 2 MODIFICATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.ADDLAGATTA,B.W.MATTHEWS REVDAT 5 30-AUG-23 2GZ5 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2GZ5 1 VERSN REVDAT 3 24-FEB-09 2GZ5 1 VERSN REVDAT 2 15-AUG-06 2GZ5 1 JRNL REVDAT 1 23-MAY-06 2GZ5 0 JRNL AUTH A.ADDLAGATTA,B.W.MATTHEWS JRNL TITL STRUCTURE OF THE ANGIOGENESIS INHIBITOR OVALICIN BOUND TO JRNL TITL 2 ITS NONCOGNATE TARGET, HUMAN TYPE 1 METHIONINE JRNL TITL 3 AMINOPEPTIDASE. JRNL REF PROTEIN SCI. V. 15 1842 2006 JRNL REFN ISSN 0961-8368 JRNL PMID 16823043 JRNL DOI 10.1110/PS.062278006 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.119 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.135 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.145 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 5156 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 244734 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2396 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 339 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.031 REMARK 3 ANGLE DISTANCES (A) : NULL REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.399 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.113 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.076 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.151 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GZ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037727. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 244734 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.31100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: GLRF REMARK 200 STARTING MODEL: PDB ENTRY 2B3K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4-6% PEG 10,000, 100 MM HEPES, PH 6.0 REMARK 280 IN EQUAL VOLUME OF THE PROTEIN 10 MG/ML IN 25 MM HEPES, PH 8.0, REMARK 280 5 MM METHIONINE AND 150 MM KCL. TO THE APO CRYSTALS, 1MM COBALT REMARK 280 CHLORIDE AND 2 MM OVALICIN WERE ADDED, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.84450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 65 REMARK 465 GLY A 66 REMARK 465 SER A 67 REMARK 465 SER A 68 REMARK 465 HIS A 69 REMARK 465 HIS A 70 REMARK 465 HIS A 71 REMARK 465 HIS A 72 REMARK 465 HIS A 73 REMARK 465 HIS A 74 REMARK 465 SER A 75 REMARK 465 SER A 76 REMARK 465 GLY A 77 REMARK 465 LEU A 78 REMARK 465 VAL A 79 REMARK 465 PRO A 80 REMARK 465 ARG A 81 REMARK 465 GLY A 82 REMARK 465 SER A 83 REMARK 465 HIS A 84 REMARK 465 MET A 85 REMARK 465 LEU A 86 REMARK 465 GLU A 87 REMARK 465 ASP A 88 REMARK 465 PRO A 89 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CO CO A 403 O HOH A 829 1.66 REMARK 500 OD2 ASP A 229 O HOH A 712 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 341 CD GLU A 341 OE1 0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 91 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 91 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 106 NH1 - CZ - NH2 ANGL. DEV. = -8.3 DEGREES REMARK 500 ARG A 106 NE - CZ - NH2 ANGL. DEV. = 6.0 DEGREES REMARK 500 THR A 134 C - N - CA ANGL. DEV. = -16.1 DEGREES REMARK 500 GLN A 136 CG - CD - OE1 ANGL. DEV. = -12.2 DEGREES REMARK 500 GLU A 146 OE1 - CD - OE2 ANGL. DEV. = -12.5 DEGREES REMARK 500 ARG A 149 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 153 CG - CD - NE ANGL. DEV. = 18.3 DEGREES REMARK 500 ARG A 153 CD - NE - CZ ANGL. DEV. = 14.6 DEGREES REMARK 500 ARG A 153 NH1 - CZ - NH2 ANGL. DEV. = -8.0 DEGREES REMARK 500 ARG A 153 NE - CZ - NH1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 156 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 LEU A 159 CA - CB - CG ANGL. DEV. = 17.3 DEGREES REMARK 500 MET A 165 CA - CB - CG ANGL. DEV. = -12.4 DEGREES REMARK 500 MET A 165 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 CYS A 183 N - CA - CB ANGL. DEV. = -13.3 DEGREES REMARK 500 TYR A 195 CG - CD1 - CE1 ANGL. DEV. = 7.0 DEGREES REMARK 500 TYR A 196 CB - CG - CD2 ANGL. DEV. = 4.8 DEGREES REMARK 500 TYR A 196 CG - CD1 - CE1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 234 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 TYR A 237 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 TYR A 237 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 PHE A 246 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ASP A 251 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG A 277 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 279 NE - CZ - NH1 ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG A 279 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 TYR A 300 CB - CG - CD1 ANGL. DEV. = -4.1 DEGREES REMARK 500 PHE A 309 CB - CG - CD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 374 CB - CG - OD1 ANGL. DEV. = 9.2 DEGREES REMARK 500 MET A 392 CG - SD - CE ANGL. DEV. = 19.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 207 -113.14 52.23 REMARK 500 HIS A 306 -108.09 -173.24 REMARK 500 GLU A 336 59.59 -151.81 REMARK 500 TRP A 353 -52.06 -122.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 403 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 128 OE1 REMARK 620 2 TYR A 195 OH 63.7 REMARK 620 3 HIS A 310 NE2 83.7 78.1 REMARK 620 4 GOL A 471 O1 161.6 100.6 83.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 404 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 207 O REMARK 620 2 VAL A 209 O 82.9 REMARK 620 3 SER A 363 O 73.8 109.5 REMARK 620 4 HOH A 623 O 145.9 88.4 78.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 402 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 229 OD1 REMARK 620 2 ASP A 229 OD1 30.1 REMARK 620 3 ASP A 229 OD2 55.8 25.9 REMARK 620 4 ASP A 240 OD1 93.3 122.4 148.1 REMARK 620 5 GLU A 367 OE1 99.6 92.7 90.8 86.6 REMARK 620 6 HOH A 710 O 83.1 92.5 95.5 87.3 173.5 REMARK 620 7 HOH A 711 O 148.8 120.8 95.0 116.8 90.8 89.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 401 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 240 OD2 REMARK 620 2 HIS A 303 NE2 90.5 REMARK 620 3 GLU A 336 OE1 162.1 86.8 REMARK 620 4 GLU A 367 OE2 87.1 127.6 80.6 REMARK 620 5 HOH A 711 O 100.8 129.8 94.5 101.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OVA A 480 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 470 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 471 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2B3K RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN METHIONINE AMINOPEPTIDASE TYPE I IN THE REMARK 900 HOLO FORM REMARK 900 RELATED ID: 1B59 RELATED DB: PDB REMARK 900 COMPLEX OF HUMAN TYPE 2 METHIONINE AMINOPEPTIDASE WITH OVALICIN DBREF 2GZ5 A 90 393 UNP P53582 AMPM1_HUMAN 81 384 SEQADV 2GZ5 MET A 65 UNP P53582 INITIATING METHIONINE SEQADV 2GZ5 GLY A 66 UNP P53582 CLONING ARTIFACT SEQADV 2GZ5 SER A 67 UNP P53582 CLONING ARTIFACT SEQADV 2GZ5 SER A 68 UNP P53582 CLONING ARTIFACT SEQADV 2GZ5 HIS A 69 UNP P53582 EXPRESSION TAG SEQADV 2GZ5 HIS A 70 UNP P53582 EXPRESSION TAG SEQADV 2GZ5 HIS A 71 UNP P53582 EXPRESSION TAG SEQADV 2GZ5 HIS A 72 UNP P53582 EXPRESSION TAG SEQADV 2GZ5 HIS A 73 UNP P53582 EXPRESSION TAG SEQADV 2GZ5 HIS A 74 UNP P53582 EXPRESSION TAG SEQADV 2GZ5 SER A 75 UNP P53582 CLONING ARTIFACT SEQADV 2GZ5 SER A 76 UNP P53582 CLONING ARTIFACT SEQADV 2GZ5 GLY A 77 UNP P53582 CLONING ARTIFACT SEQADV 2GZ5 LEU A 78 UNP P53582 CLONING ARTIFACT SEQADV 2GZ5 VAL A 79 UNP P53582 CLONING ARTIFACT SEQADV 2GZ5 PRO A 80 UNP P53582 CLONING ARTIFACT SEQADV 2GZ5 ARG A 81 UNP P53582 CLONING ARTIFACT SEQADV 2GZ5 GLY A 82 UNP P53582 CLONING ARTIFACT SEQADV 2GZ5 SER A 83 UNP P53582 CLONING ARTIFACT SEQADV 2GZ5 HIS A 84 UNP P53582 CLONING ARTIFACT SEQADV 2GZ5 MET A 85 UNP P53582 CLONING ARTIFACT SEQADV 2GZ5 LEU A 86 UNP P53582 CLONING ARTIFACT SEQADV 2GZ5 GLU A 87 UNP P53582 CLONING ARTIFACT SEQADV 2GZ5 ASP A 88 UNP P53582 CLONING ARTIFACT SEQADV 2GZ5 PRO A 89 UNP P53582 CLONING ARTIFACT SEQRES 1 A 329 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 329 LEU VAL PRO ARG GLY SER HIS MET LEU GLU ASP PRO TYR SEQRES 3 A 329 ARG TYR THR GLY LYS LEU ARG PRO HIS TYR PRO LEU MET SEQRES 4 A 329 PRO THR ARG PRO VAL PRO SER TYR ILE GLN ARG PRO ASP SEQRES 5 A 329 TYR ALA ASP HIS PRO LEU GLY MET SER GLU SER GLU GLN SEQRES 6 A 329 ALA LEU LYS GLY THR SER GLN ILE LYS LEU LEU SER SER SEQRES 7 A 329 GLU ASP ILE GLU GLY MET ARG LEU VAL CYS ARG LEU ALA SEQRES 8 A 329 ARG GLU VAL LEU ASP VAL ALA ALA GLY MET ILE LYS PRO SEQRES 9 A 329 GLY VAL THR THR GLU GLU ILE ASP HIS ALA VAL HIS LEU SEQRES 10 A 329 ALA CYS ILE ALA ARG ASN CYS TYR PRO SER PRO LEU ASN SEQRES 11 A 329 TYR TYR ASN PHE PRO LYS SER CYS CYS THR SER VAL ASN SEQRES 12 A 329 GLU VAL ILE CYS HIS GLY ILE PRO ASP ARG ARG PRO LEU SEQRES 13 A 329 GLN GLU GLY ASP ILE VAL ASN VAL ASP ILE THR LEU TYR SEQRES 14 A 329 ARG ASN GLY TYR HIS GLY ASP LEU ASN GLU THR PHE PHE SEQRES 15 A 329 VAL GLY GLU VAL ASP ASP GLY ALA ARG LYS LEU VAL GLN SEQRES 16 A 329 THR THR TYR GLU CYS LEU MET GLN ALA ILE ASP ALA VAL SEQRES 17 A 329 LYS PRO GLY VAL ARG TYR ARG GLU LEU GLY ASN ILE ILE SEQRES 18 A 329 GLN LYS HIS ALA GLN ALA ASN GLY PHE SER VAL VAL ARG SEQRES 19 A 329 SER TYR CYS GLY HIS GLY ILE HIS LYS LEU PHE HIS THR SEQRES 20 A 329 ALA PRO ASN VAL PRO HIS TYR ALA LYS ASN LYS ALA VAL SEQRES 21 A 329 GLY VAL MET LYS SER GLY HIS VAL PHE THR ILE GLU PRO SEQRES 22 A 329 MET ILE CYS GLU GLY GLY TRP GLN ASP GLU THR TRP PRO SEQRES 23 A 329 ASP GLY TRP THR ALA VAL THR ARG ASP GLY LYS ARG SER SEQRES 24 A 329 ALA GLN PHE GLU HIS THR LEU LEU VAL THR ASP THR GLY SEQRES 25 A 329 CYS GLU ILE LEU THR ARG ARG LEU ASP SER ALA ARG PRO SEQRES 26 A 329 HIS PHE MET SER HET CO A 401 1 HET CO A 402 1 HET CO A 403 1 HET K A 404 1 HET OVA A 480 21 HET GOL A 470 12 HET GOL A 471 6 HETNAM CO COBALT (II) ION HETNAM K POTASSIUM ION HETNAM OVA 3,4-DIHYDROXY-2-METHOXY-4-METHYL-3-[2-METHYL-3-(3- HETNAM 2 OVA METHYL-BUT-2-ENYL) -OXIRANYL]-CYCLOHEXANONE HETNAM GOL GLYCEROL HETSYN OVA OVALICIN HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CO 3(CO 2+) FORMUL 5 K K 1+ FORMUL 6 OVA C16 H26 O5 FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 HOH *339(H2 O) HELIX 1 1 PRO A 115 HIS A 120 5 6 HELIX 2 2 SER A 125 LEU A 131 1 7 HELIX 3 3 SER A 141 GLY A 164 1 24 HELIX 4 4 THR A 171 ARG A 186 1 16 HELIX 5 5 ASN A 194 PHE A 198 5 5 HELIX 6 6 ASP A 251 VAL A 272 1 22 HELIX 7 7 ARG A 279 ASN A 292 1 14 HELIX 8 8 PRO A 389 SER A 393 5 5 SHEET 1 A 3 TYR A 189 PRO A 190 0 SHEET 2 A 3 ILE A 225 ARG A 234 -1 O TYR A 233 N TYR A 189 SHEET 3 A 3 CYS A 203 VAL A 206 -1 N SER A 205 O ASN A 227 SHEET 1 B 3 TYR A 189 PRO A 190 0 SHEET 2 B 3 ILE A 225 ARG A 234 -1 O TYR A 233 N TYR A 189 SHEET 3 B 3 TYR A 237 PHE A 246 -1 O PHE A 245 N VAL A 226 SHEET 1 C 3 VAL A 209 CYS A 211 0 SHEET 2 C 3 ALA A 355 THR A 357 -1 O ALA A 355 N ILE A 210 SHEET 3 C 3 ASP A 346 THR A 348 -1 N GLU A 347 O VAL A 356 SHEET 1 D 3 SER A 295 VAL A 296 0 SHEET 2 D 3 MET A 338 CYS A 340 -1 O CYS A 340 N SER A 295 SHEET 3 D 3 SER A 363 GLN A 365 -1 O ALA A 364 N ILE A 339 SHEET 1 E 2 GLY A 302 GLY A 304 0 SHEET 2 E 2 THR A 311 VAL A 315 -1 O VAL A 315 N GLY A 302 SHEET 1 F 3 VAL A 332 ILE A 335 0 SHEET 2 F 3 HIS A 368 VAL A 372 -1 O LEU A 370 N PHE A 333 SHEET 3 F 3 CYS A 377 ILE A 379 -1 O GLU A 378 N LEU A 371 LINK NE2 HIS A 212 C11 OVA A 480 1555 1555 1.53 LINK OE1 GLU A 128 CO CO A 403 1555 1555 2.46 LINK OH TYR A 195 CO CO A 403 1555 1555 2.02 LINK O ASN A 207 K K A 404 1555 1555 2.90 LINK O VAL A 209 K K A 404 1555 1555 2.62 LINK OD1AASP A 229 CO CO A 402 1555 1555 2.15 LINK OD1BASP A 229 CO CO A 402 1555 1555 1.96 LINK OD2AASP A 229 CO CO A 402 1555 1555 2.28 LINK OD2 ASP A 240 CO CO A 401 1555 1555 2.12 LINK OD1 ASP A 240 CO CO A 402 1555 1555 2.02 LINK NE2 HIS A 303 CO CO A 401 1555 1555 2.02 LINK NE2 HIS A 310 CO CO A 403 1555 1555 2.20 LINK OE1 GLU A 336 CO CO A 401 1555 1555 2.21 LINK O SER A 363 K K A 404 1555 1555 2.67 LINK OE2 GLU A 367 CO CO A 401 1555 1555 2.02 LINK OE1 GLU A 367 CO CO A 402 1555 1555 2.12 LINK CO CO A 401 O HOH A 711 1555 1555 1.96 LINK CO CO A 402 O HOH A 710 1555 1555 2.18 LINK CO CO A 402 O HOH A 711 1555 1555 2.01 LINK CO CO A 403 O1 GOL A 471 1555 1555 2.03 LINK K K A 404 O HOH A 623 1555 1555 2.80 CISPEP 1 TYR A 100 PRO A 101 0 -1.42 CISPEP 2 ALA A 312 PRO A 313 0 2.32 SITE 1 AC1 7 ASP A 240 HIS A 303 GLU A 336 GLU A 367 SITE 2 AC1 7 CO A 402 OVA A 480 HOH A 711 SITE 1 AC2 6 ASP A 229 ASP A 240 GLU A 367 CO A 401 SITE 2 AC2 6 HOH A 710 HOH A 711 SITE 1 AC3 7 GLU A 128 TYR A 195 TYR A 196 HIS A 310 SITE 2 AC3 7 GOL A 471 HOH A 829 HOH A 830 SITE 1 AC4 6 SER A 205 ASN A 207 VAL A 209 SER A 363 SITE 2 AC4 6 HOH A 623 HOH A 828 SITE 1 AC5 12 TYR A 195 PHE A 198 CYS A 203 HIS A 212 SITE 2 AC5 12 TYR A 300 CYS A 301 GLU A 336 CO A 401 SITE 3 AC5 12 GOL A 471 HOH A 637 HOH A 711 HOH A 831 SITE 1 AC6 12 LEU A 96 THR A 172 THR A 204 SER A 205 SITE 2 AC6 12 VAL A 206 VAL A 209 ILE A 214 ASP A 216 SITE 3 AC6 12 ARG A 218 HOH A 501 HOH A 502 HOH A 552 SITE 1 AC7 7 TYR A 195 HIS A 310 CO A 403 OVA A 480 SITE 2 AC7 7 HOH A 637 HOH A 830 HOH A 831 CRYST1 47.568 77.689 48.644 90.00 90.63 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021023 0.000000 0.000231 0.00000 SCALE2 0.000000 0.012872 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020559 0.00000