HEADER PROTEIN TRANSPORT 11-MAY-06 2GZH TITLE CRYSTAL STRUCTURE OF RAB11 IN COMPLEX WITH RAB11-FAMILY INTERACTING TITLE 2 PROTEIN 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN RAB-11A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: G PROTEIN DOMAIN; COMPND 5 SYNONYM: RAB-11, YL8; COMPND 6 EC: 3.6.5.2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RAB11-FIP2 LONG ISOFORM; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: RAB11-FIP2 RAB-BINDING DOMAIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAB11A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PMAL-C2X KEYWDS RAS-LIKE G PROTEIN FOLD, A-HELICAL COILED COIL, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR A.R.KHAN REVDAT 4 20-OCT-21 2GZH 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 2GZH 1 VERSN REVDAT 2 29-AUG-06 2GZH 1 JRNL REVDAT 1 15-AUG-06 2GZH 0 JRNL AUTH W.N.JAGOE,A.J.LINDSAY,R.J.READ,A.J.MCCOY,M.W.MCCAFFREY, JRNL AUTH 2 A.R.KHAN JRNL TITL CRYSTAL STRUCTURE OF RAB11 IN COMPLEX WITH RAB11 FAMILY JRNL TITL 2 INTERACTING PROTEIN 2. JRNL REF STRUCTURE V. 14 1273 2006 JRNL REFN ISSN 0969-2126 JRNL PMID 16905101 JRNL DOI 10.1016/J.STR.2006.06.010 REMARK 2 REMARK 2 RESOLUTION. 2.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 9719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 492 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 684 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1809 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 125 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15000 REMARK 3 B22 (A**2) : 0.15000 REMARK 3 B33 (A**2) : -0.22000 REMARK 3 B12 (A**2) : 0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.541 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.290 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.204 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.799 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1889 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2555 ; 1.977 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 224 ; 7.096 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;31.526 ;23.297 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 332 ;18.903 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;21.656 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 290 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1393 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 921 ; 0.256 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1273 ; 0.317 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 160 ; 0.181 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 92 ; 0.224 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.192 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1152 ; 1.213 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1806 ; 2.146 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 843 ; 2.830 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 749 ; 4.631 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GZH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037739. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98175 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10234 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.470 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 16.00 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 0.29700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 15.90 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM PHOSPHATE BUFFER, REMARK 280 APPROXIMATELY 0.3M CONCENTRATION, PH 5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.46667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.93333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 74.93333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.46667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL UNIT IS GENERATED BY THE REMARK 300 CRYSTALLOGRAPHIC 2-FOLD AXIS, TRANSFORMATION (1,-1,-1). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -103.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 74.93333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 THR A 3 REMARK 465 ARG A 4 REMARK 465 ASP A 5 REMARK 465 GLY B 406 REMARK 465 ALA B 407 REMARK 465 MET B 408 REMARK 465 ALA B 409 REMARK 465 ALA B 410 REMARK 465 LYS B 411 REMARK 465 PHE B 412 REMARK 465 ARG B 413 REMARK 465 ALA B 414 REMARK 465 SER B 415 REMARK 465 ASN B 416 REMARK 465 ILE B 417 REMARK 465 MET B 418 REMARK 465 PRO B 419 REMARK 465 SER B 420 REMARK 465 SER B 421 REMARK 465 SER B 422 REMARK 465 PHE B 423 REMARK 465 HIS B 424 REMARK 465 MET B 425 REMARK 465 SER B 426 REMARK 465 PRO B 427 REMARK 465 THR B 428 REMARK 465 SER B 429 REMARK 465 ASN B 430 REMARK 465 GLU B 431 REMARK 465 ASP B 432 REMARK 465 LEU B 433 REMARK 465 ARG B 434 REMARK 465 LYS B 435 REMARK 465 ILE B 436 REMARK 465 PRO B 437 REMARK 465 ASP B 438 REMARK 465 SER B 439 REMARK 465 ASN B 440 REMARK 465 PRO B 441 REMARK 465 PHE B 442 REMARK 465 ASP B 443 REMARK 465 ALA B 444 REMARK 465 THR B 445 REMARK 465 ALA B 446 REMARK 465 ARG B 504 REMARK 465 LYS B 505 REMARK 465 ALA B 506 REMARK 465 GLY B 507 REMARK 465 LYS B 508 REMARK 465 PHE B 509 REMARK 465 SER B 510 REMARK 465 ASN B 511 REMARK 465 SER B 512 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 173 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER B 450 CB OG REMARK 470 LEU B 451 CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA GLU A 7 O HOH A 659 0.00 REMARK 500 NH1 ARG A 140 OE1 GLU A 144 1.43 REMARK 500 N GLU A 7 O HOH A 659 1.49 REMARK 500 C GLU A 7 O HOH A 659 1.53 REMARK 500 CB GLU A 7 O HOH A 659 1.55 REMARK 500 CE LYS A 41 O HOH A 548 2.17 REMARK 500 O HOH A 576 O HOH A 629 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 475 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 7 171.15 71.55 REMARK 500 TYR A 8 161.57 164.39 REMARK 500 ASP A 56 -135.21 56.90 REMARK 500 ARG A 72 -77.87 -81.59 REMARK 500 ASP A 114 143.54 -39.29 REMARK 500 LYS A 125 39.91 70.70 REMARK 500 LEU A 128 55.15 -90.85 REMARK 500 SER A 158 -9.38 92.37 REMARK 500 ASN A 160 -0.50 67.60 REMARK 500 ARG B 449 -115.56 -65.86 REMARK 500 SER B 450 -56.13 64.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 950 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 25 OG REMARK 620 2 THR A 43 OG1 68.8 REMARK 620 3 HOH A 655 O 80.2 80.4 REMARK 620 4 HOH A 658 O 98.7 98.4 178.6 REMARK 620 5 GTP A 900 O2B 89.4 153.0 80.4 100.5 REMARK 620 6 GTP A 900 O2G 153.7 93.9 77.3 103.5 100.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 951 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 648 O REMARK 620 2 HOH A 657 O 164.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 950 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 951 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 900 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GZD RELATED DB: PDB REMARK 900 SAME COMPLEX IN ORTHORHOMBIC SPACE GROUP DBREF 2GZH A 2 173 UNP P62491 RB11A_HUMAN 1 172 DBREF 2GZH B 410 512 UNP Q7L804 RFIP2_HUMAN 410 512 SEQADV 2GZH MET A 1 UNP P62491 CLONING ARTIFACT SEQADV 2GZH LEU A 70 UNP P62491 GLN 69 ENGINEERED MUTATION SEQADV 2GZH MSE A 120 UNP P62491 MET 119 MODIFIED RESIDUE SEQADV 2GZH GLY B 406 UNP Q7L804 CLONING ARTIFACT SEQADV 2GZH ALA B 407 UNP Q7L804 CLONING ARTIFACT SEQADV 2GZH MET B 408 UNP Q7L804 CLONING ARTIFACT SEQADV 2GZH ALA B 409 UNP Q7L804 CLONING ARTIFACT SEQADV 2GZH MSE B 489 UNP Q7L804 MET 489 MODIFIED RESIDUE SEQRES 1 A 173 MET GLY THR ARG ASP ASP GLU TYR ASP TYR LEU PHE LYS SEQRES 2 A 173 VAL VAL LEU ILE GLY ASP SER GLY VAL GLY LYS SER ASN SEQRES 3 A 173 LEU LEU SER ARG PHE THR ARG ASN GLU PHE ASN LEU GLU SEQRES 4 A 173 SER LYS SER THR ILE GLY VAL GLU PHE ALA THR ARG SER SEQRES 5 A 173 ILE GLN VAL ASP GLY LYS THR ILE LYS ALA GLN ILE TRP SEQRES 6 A 173 ASP THR ALA GLY LEU GLU ARG TYR ARG ALA ILE THR SER SEQRES 7 A 173 ALA TYR TYR ARG GLY ALA VAL GLY ALA LEU LEU VAL TYR SEQRES 8 A 173 ASP ILE ALA LYS HIS LEU THR TYR GLU ASN VAL GLU ARG SEQRES 9 A 173 TRP LEU LYS GLU LEU ARG ASP HIS ALA ASP SER ASN ILE SEQRES 10 A 173 VAL ILE MSE LEU VAL GLY ASN LYS SER ASP LEU ARG HIS SEQRES 11 A 173 LEU ARG ALA VAL PRO THR ASP GLU ALA ARG ALA PHE ALA SEQRES 12 A 173 GLU LYS ASN GLY LEU SER PHE ILE GLU THR SER ALA LEU SEQRES 13 A 173 ASP SER THR ASN VAL GLU ALA ALA PHE GLN THR ILE LEU SEQRES 14 A 173 THR GLU ILE TYR SEQRES 1 B 107 GLY ALA MET ALA ALA LYS PHE ARG ALA SER ASN ILE MET SEQRES 2 B 107 PRO SER SER SER PHE HIS MET SER PRO THR SER ASN GLU SEQRES 3 B 107 ASP LEU ARG LYS ILE PRO ASP SER ASN PRO PHE ASP ALA SEQRES 4 B 107 THR ALA GLY TYR ARG SER LEU THR TYR GLU GLU VAL LEU SEQRES 5 B 107 GLN GLU LEU VAL LYS HIS LYS GLU LEU LEU ARG ARG LYS SEQRES 6 B 107 ASP THR HIS ILE ARG GLU LEU GLU ASP TYR ILE ASP ASN SEQRES 7 B 107 LEU LEU VAL ARG VAL MSE GLU GLU THR PRO SER ILE LEU SEQRES 8 B 107 ARG VAL PRO TYR GLU PRO SER ARG LYS ALA GLY LYS PHE SEQRES 9 B 107 SER ASN SER MODRES 2GZH MSE A 120 MET SELENOMETHIONINE MODRES 2GZH MSE B 489 MET SELENOMETHIONINE HET MSE A 120 8 HET MSE B 489 8 HET PO4 A 901 5 HET MG A 950 1 HET MG A 951 1 HET GTP A 900 32 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 3 PO4 O4 P 3- FORMUL 4 MG 2(MG 2+) FORMUL 6 GTP C10 H16 N5 O14 P3 FORMUL 7 HOH *125(H2 O) HELIX 1 1 GLY A 23 ASN A 34 1 12 HELIX 2 2 ILE A 76 ARG A 82 1 7 HELIX 3 3 LYS A 95 ASN A 101 1 7 HELIX 4 4 ASN A 101 ALA A 113 1 13 HELIX 5 5 LEU A 128 ARG A 132 5 5 HELIX 6 6 PRO A 135 ASN A 146 1 12 HELIX 7 7 ASN A 160 GLU A 171 1 12 HELIX 8 8 THR B 452 THR B 492 1 41 HELIX 9 9 PRO B 493 ARG B 497 5 5 SHEET 1 A 6 VAL A 46 VAL A 55 0 SHEET 2 A 6 LYS A 58 THR A 67 -1 O ALA A 62 N ARG A 51 SHEET 3 A 6 TYR A 10 ILE A 17 1 N PHE A 12 O GLN A 63 SHEET 4 A 6 GLY A 86 ASP A 92 1 O VAL A 90 N ILE A 17 SHEET 5 A 6 VAL A 118 ASN A 124 1 O MSE A 120 N LEU A 89 SHEET 6 A 6 SER A 149 GLU A 152 1 O SER A 149 N LEU A 121 LINK C ILE A 119 N MSE A 120 1555 1555 1.32 LINK C MSE A 120 N LEU A 121 1555 1555 1.33 LINK C VAL B 488 N MSE B 489 1555 1555 1.32 LINK C MSE B 489 N GLU B 490 1555 1555 1.32 LINK OG SER A 25 MG MG A 950 1555 1555 2.18 LINK OG1 THR A 43 MG MG A 950 1555 1555 2.18 LINK O HOH A 648 MG MG A 951 1555 1555 2.90 LINK O HOH A 655 MG MG A 950 1555 1555 2.23 LINK O HOH A 657 MG MG A 951 1555 1555 2.10 LINK O HOH A 658 MG MG A 950 1555 1555 2.10 LINK O2B GTP A 900 MG MG A 950 1555 1555 2.16 LINK O2G GTP A 900 MG MG A 950 1555 1555 2.18 CISPEP 1 VAL B 498 PRO B 499 0 16.72 SITE 1 AC1 7 THR A 167 THR A 170 HOH A 604 LYS B 470 SITE 2 AC1 7 ASP B 471 ILE B 474 ARG B 475 SITE 1 AC2 5 SER A 25 THR A 43 HOH A 655 HOH A 658 SITE 2 AC2 5 GTP A 900 SITE 1 AC3 3 GLU A 108 HOH A 648 HOH A 657 SITE 1 AC4 27 SER A 20 GLY A 21 VAL A 22 GLY A 23 SITE 2 AC4 27 LYS A 24 SER A 25 ASN A 26 PHE A 36 SITE 3 AC4 27 ASN A 37 LEU A 38 SER A 40 SER A 42 SITE 4 AC4 27 THR A 43 GLY A 69 ASN A 124 LYS A 125 SITE 5 AC4 27 ASP A 127 LEU A 128 SER A 154 ALA A 155 SITE 6 AC4 27 LEU A 156 HOH A 565 HOH A 606 HOH A 611 SITE 7 AC4 27 HOH A 655 HOH A 658 MG A 950 CRYST1 64.740 64.740 112.400 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015446 0.008918 0.000000 0.00000 SCALE2 0.000000 0.017836 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008897 0.00000