data_2GZK # _entry.id 2GZK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2GZK pdb_00002gzk 10.2210/pdb2gzk/pdb RCSB RCSB037742 ? ? WWPDB D_1000037742 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.db_id 7105 _pdbx_database_related.details 'NMR chemical shift assignments' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2GZK _pdbx_database_status.recvd_initial_deposition_date 2006-05-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Stott, K.' 1 'Tang, G.S.' 2 'Lee, K.B.' 3 'Thomas, J.O.' 4 # _citation.id primary _citation.title 'Structure of a Complex of Tandem HMG Boxes and DNA.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 360 _citation.page_first 90 _citation.page_last 104 _citation.year 2006 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16813837 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2006.04.059 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Stott, K.' 1 ? primary 'Tang, G.S.' 2 ? primary 'Lee, K.B.' 3 ? primary 'Thomas, J.O.' 4 ? # _cell.entry_id 2GZK _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2GZK _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*GP*GP*AP*TP*CP*TP*AP*AP*AP*CP*AP*AP*TP*GP*C)-3'" 4931.230 1 ? ? ? ? 2 polymer syn "5'-D(*GP*CP*AP*TP*TP*GP*TP*TP*TP*AP*GP*AP*TP*CP*CP*C)-3'" 4864.163 1 ? ? ? ? 3 polymer man 'Sex-determining region on Y / HMGB1' 18988.025 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DG)(DG)(DA)(DT)(DC)(DT)(DA)(DA)(DA)(DC)(DA)(DA)(DT)(DG)(DC)' GGGATCTAAACAATGC B ? 2 polydeoxyribonucleotide no no '(DG)(DC)(DA)(DT)(DT)(DG)(DT)(DT)(DT)(DA)(DG)(DA)(DT)(DC)(DC)(DC)' GCATTGTTTAGATCCC C ? 3 'polypeptide(L)' no no ;VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRKGETK KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK ; ;VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRKGETK KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DG n 1 4 DA n 1 5 DT n 1 6 DC n 1 7 DT n 1 8 DA n 1 9 DA n 1 10 DA n 1 11 DC n 1 12 DA n 1 13 DA n 1 14 DT n 1 15 DG n 1 16 DC n 2 1 DG n 2 2 DC n 2 3 DA n 2 4 DT n 2 5 DT n 2 6 DG n 2 7 DT n 2 8 DT n 2 9 DT n 2 10 DA n 2 11 DG n 2 12 DA n 2 13 DT n 2 14 DC n 2 15 DC n 2 16 DC n 3 1 VAL n 3 2 GLN n 3 3 ASP n 3 4 ARG n 3 5 VAL n 3 6 LYS n 3 7 ARG n 3 8 PRO n 3 9 MET n 3 10 ASN n 3 11 ALA n 3 12 PHE n 3 13 ILE n 3 14 VAL n 3 15 TRP n 3 16 SER n 3 17 ARG n 3 18 ASP n 3 19 GLN n 3 20 ARG n 3 21 ARG n 3 22 LYS n 3 23 MET n 3 24 ALA n 3 25 LEU n 3 26 GLU n 3 27 ASN n 3 28 PRO n 3 29 ARG n 3 30 MET n 3 31 ARG n 3 32 ASN n 3 33 SER n 3 34 GLU n 3 35 ILE n 3 36 SER n 3 37 LYS n 3 38 GLN n 3 39 LEU n 3 40 GLY n 3 41 TYR n 3 42 GLN n 3 43 TRP n 3 44 LYS n 3 45 MET n 3 46 LEU n 3 47 THR n 3 48 GLU n 3 49 ALA n 3 50 GLU n 3 51 LYS n 3 52 TRP n 3 53 PRO n 3 54 PHE n 3 55 PHE n 3 56 GLN n 3 57 GLU n 3 58 ALA n 3 59 GLN n 3 60 LYS n 3 61 LEU n 3 62 GLN n 3 63 ALA n 3 64 MET n 3 65 HIS n 3 66 ARG n 3 67 GLU n 3 68 LYS n 3 69 TYR n 3 70 PRO n 3 71 ASN n 3 72 TYR n 3 73 LYS n 3 74 TYR n 3 75 ARG n 3 76 LYS n 3 77 GLY n 3 78 GLU n 3 79 THR n 3 80 LYS n 3 81 LYS n 3 82 LYS n 3 83 PHE n 3 84 LYS n 3 85 ASP n 3 86 PRO n 3 87 ASN n 3 88 ALA n 3 89 PRO n 3 90 LYS n 3 91 ARG n 3 92 PRO n 3 93 PRO n 3 94 SER n 3 95 ALA n 3 96 PHE n 3 97 PHE n 3 98 LEU n 3 99 PHE n 3 100 CYS n 3 101 SER n 3 102 GLU n 3 103 TYR n 3 104 ARG n 3 105 PRO n 3 106 LYS n 3 107 ILE n 3 108 LYS n 3 109 GLY n 3 110 GLU n 3 111 HIS n 3 112 PRO n 3 113 GLY n 3 114 LEU n 3 115 SER n 3 116 ILE n 3 117 GLY n 3 118 ASP n 3 119 VAL n 3 120 ALA n 3 121 LYS n 3 122 LYS n 3 123 LEU n 3 124 GLY n 3 125 GLU n 3 126 MET n 3 127 TRP n 3 128 ASN n 3 129 ASN n 3 130 THR n 3 131 ALA n 3 132 ALA n 3 133 ASP n 3 134 ASP n 3 135 LYS n 3 136 GLN n 3 137 PRO n 3 138 TYR n 3 139 GLU n 3 140 LYS n 3 141 LYS n 3 142 ALA n 3 143 ALA n 3 144 LYS n 3 145 LEU n 3 146 LYS n 3 147 GLU n 3 148 LYS n 3 149 TYR n 3 150 GLU n 3 151 LYS n 3 152 ASP n 3 153 ILE n 3 154 ALA n 3 155 ALA n 3 156 TYR n 3 157 ARG n 3 158 ALA n 3 159 LYS n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'human, black rat' _entity_src_gen.gene_src_genus 'Homo, Rattus' _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species , _entity_src_gen.gene_src_strain , _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens, Rattus rattus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606,10117 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q6J415_HUMAN Q6J4I5 3 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 56 ? 2 UNP Q548R9_RAT Q548R9 3 ;KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAA YRAK ; 82 ? 3 PDB 2GZK 2GZK 1 ? ? ? 4 PDB 2GZK 2GZK 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2GZK A 1 ? 75 ? Q6J4I5 56 ? 130 ? 1 75 2 2 2GZK A 76 ? 159 ? Q548R9 82 ? 165 ? 76 159 3 3 2GZK B 1 ? 16 ? 2GZK 201 ? 216 ? 201 216 4 4 2GZK C 1 ? 16 ? 2GZK 217 ? 232 ? 217 232 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D HSQC' 1 2 1 '3D HN(CO)CA' 1 3 1 HNCA-J 1 4 1 '3D CBCA(CO)NH' 1 5 1 '3D HNCACB' 1 6 1 '3D HNCO' 1 7 1 '3D (H)CC(CO)NH-TOCSY' 1 8 1 '3D TOCSY-15N-HSQC' 1 9 1 '3D NOESY-15N-HSQC' 1 10 1 '3D HCCH-TOCSY' 1 11 1 '3D NOESY-13C-HSQC' 1 12 1 HNHA 1 13 1 '2D TOCSY' 1 14 1 DQF-COSY 1 15 1 '2D NOESY' 1 16 1 '[F1]-13C/15N-filtered TOCSY [F1]-13C/15N-filtered TOCSY' 1 17 1 '2D [F1]-13C/15N-filtered DQF COSY' 1 18 1 '2D [F1]-13C/15N-filtered NOESY' 1 19 1 '3D [F1]-13C/15N-filtered NOESY-13C-HSQC' 1 20 1 '2D [F1,F2]-13C/15N-filtered NOESY' 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 310 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.8 _pdbx_nmr_exptl_sample_conditions.ionic_strength '10mM phosphate buffer' _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1mM SRY.B U-15N,13C, 1mM 16-mer DNA, 10mM phosphate buffer, pH 6.8, 1mM EDTA, 2mM DTT U-2H, 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 DRX Bruker 500 ? 2 DRX Bruker 800 ? # _pdbx_nmr_refine.entry_id 2GZK _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2GZK _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2GZK _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 1.7 Bruker 1 processing Azara 2.7 'Boucher, W.' 2 'data analysis' Analysis 1.0 'Boucher, W. and Stevens, T.' 3 'structure solution' CNS 1.1 'Brunger, A.' 4 refinement CNS 1.1 'Brunger, A.' 5 # _exptl.entry_id 2GZK _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 2GZK _struct.title 'Structure of a complex of tandem HMG boxes and DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2GZK _struct_keywords.pdbx_keywords 'DNA/STRUCTURAL PROTEIN' _struct_keywords.text 'PROTEIN-DNA COMPLEX, HMG BOX, amphoterin, DNA-STRUCTURAL PROTEIN COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN C 10 ? ASN C 27 ? ASN A 10 ASN A 27 1 ? 18 HELX_P HELX_P2 2 ARG C 31 ? LEU C 46 ? ARG A 31 LEU A 46 1 ? 16 HELX_P HELX_P3 3 THR C 47 ? TYR C 69 ? THR A 47 TYR A 69 1 ? 23 HELX_P HELX_P4 4 THR C 79 ? PHE C 83 ? THR A 79 PHE A 83 5 ? 5 HELX_P HELX_P5 5 SER C 94 ? HIS C 111 ? SER A 94 HIS A 111 1 ? 18 HELX_P HELX_P6 6 SER C 115 ? THR C 130 ? SER A 115 THR A 130 1 ? 16 HELX_P HELX_P7 7 ALA C 131 ? ALA C 158 ? ALA A 131 ALA A 158 1 ? 28 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 16 N3 ? ? B DG 201 C DC 232 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 16 O2 ? ? B DG 201 C DC 232 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 16 N4 ? ? B DG 201 C DC 232 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 15 N3 ? ? B DG 202 C DC 231 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 15 O2 ? ? B DG 202 C DC 231 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 15 N4 ? ? B DG 202 C DC 231 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 14 N3 ? ? B DG 203 C DC 230 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 14 O2 ? ? B DG 203 C DC 230 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 14 N4 ? ? B DG 203 C DC 230 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 13 N3 ? ? B DA 204 C DT 229 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 13 O4 ? ? B DA 204 C DT 229 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 12 N1 ? ? B DT 205 C DA 228 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 12 N6 ? ? B DT 205 C DA 228 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 11 N1 ? ? B DC 206 C DG 227 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 11 O6 ? ? B DC 206 C DG 227 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 11 N2 ? ? B DC 206 C DG 227 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 10 N1 ? ? B DT 207 C DA 226 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 10 N6 ? ? B DT 207 C DA 226 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 9 N3 ? ? B DA 208 C DT 225 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 9 O4 ? ? B DA 208 C DT 225 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 8 N3 ? ? B DA 209 C DT 224 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 8 O4 ? ? B DA 209 C DT 224 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 7 N3 ? ? B DA 210 C DT 223 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 7 O4 ? ? B DA 210 C DT 223 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 6 N1 ? ? B DC 211 C DG 222 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 6 O6 ? ? B DC 211 C DG 222 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 6 N2 ? ? B DC 211 C DG 222 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 5 N3 ? ? B DA 212 C DT 221 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 5 O4 ? ? B DA 212 C DT 221 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DA 13 N1 ? ? ? 1_555 B DT 4 N3 ? ? B DA 213 C DT 220 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 4 O4 ? ? B DA 213 C DT 220 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 3 N1 ? ? B DT 214 C DA 219 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 3 N6 ? ? B DT 214 C DA 219 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DG 15 N1 ? ? ? 1_555 B DC 2 N3 ? ? B DG 215 C DC 218 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DG 15 N2 ? ? ? 1_555 B DC 2 O2 ? ? B DG 215 C DC 218 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DG 15 O6 ? ? ? 1_555 B DC 2 N4 ? ? B DG 215 C DC 218 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DC 16 N3 ? ? ? 1_555 B DG 1 N1 ? ? B DC 216 C DG 217 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DC 16 N4 ? ? ? 1_555 B DG 1 O6 ? ? B DC 216 C DG 217 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 16 O2 ? ? ? 1_555 B DG 1 N2 ? ? B DC 216 C DG 217 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2GZK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2GZK _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 201 201 DG G B . n A 1 2 DG 2 202 202 DG G B . n A 1 3 DG 3 203 203 DG G B . n A 1 4 DA 4 204 204 DA A B . n A 1 5 DT 5 205 205 DT T B . n A 1 6 DC 6 206 206 DC C B . n A 1 7 DT 7 207 207 DT T B . n A 1 8 DA 8 208 208 DA A B . n A 1 9 DA 9 209 209 DA A B . n A 1 10 DA 10 210 210 DA A B . n A 1 11 DC 11 211 211 DC C B . n A 1 12 DA 12 212 212 DA A B . n A 1 13 DA 13 213 213 DA A B . n A 1 14 DT 14 214 214 DT T B . n A 1 15 DG 15 215 215 DG G B . n A 1 16 DC 16 216 216 DC C B . n B 2 1 DG 1 217 217 DG G C . n B 2 2 DC 2 218 218 DC C C . n B 2 3 DA 3 219 219 DA A C . n B 2 4 DT 4 220 220 DT T C . n B 2 5 DT 5 221 221 DT T C . n B 2 6 DG 6 222 222 DG G C . n B 2 7 DT 7 223 223 DT T C . n B 2 8 DT 8 224 224 DT T C . n B 2 9 DT 9 225 225 DT T C . n B 2 10 DA 10 226 226 DA A C . n B 2 11 DG 11 227 227 DG G C . n B 2 12 DA 12 228 228 DA A C . n B 2 13 DT 13 229 229 DT T C . n B 2 14 DC 14 230 230 DC C C . n B 2 15 DC 15 231 231 DC C C . n B 2 16 DC 16 232 232 DC C C . n C 3 1 VAL 1 1 1 VAL VAL A . n C 3 2 GLN 2 2 2 GLN GLN A . n C 3 3 ASP 3 3 3 ASP ASP A . n C 3 4 ARG 4 4 4 ARG ARG A . n C 3 5 VAL 5 5 5 VAL VAL A . n C 3 6 LYS 6 6 6 LYS LYS A . n C 3 7 ARG 7 7 7 ARG ARG A . n C 3 8 PRO 8 8 8 PRO PRO A . n C 3 9 MET 9 9 9 MET MET A . n C 3 10 ASN 10 10 10 ASN ASN A . n C 3 11 ALA 11 11 11 ALA ALA A . n C 3 12 PHE 12 12 12 PHE PHE A . n C 3 13 ILE 13 13 13 ILE ILE A . n C 3 14 VAL 14 14 14 VAL VAL A . n C 3 15 TRP 15 15 15 TRP TRP A . n C 3 16 SER 16 16 16 SER SER A . n C 3 17 ARG 17 17 17 ARG ARG A . n C 3 18 ASP 18 18 18 ASP ASP A . n C 3 19 GLN 19 19 19 GLN GLN A . n C 3 20 ARG 20 20 20 ARG ARG A . n C 3 21 ARG 21 21 21 ARG ARG A . n C 3 22 LYS 22 22 22 LYS LYS A . n C 3 23 MET 23 23 23 MET MET A . n C 3 24 ALA 24 24 24 ALA ALA A . n C 3 25 LEU 25 25 25 LEU LEU A . n C 3 26 GLU 26 26 26 GLU GLU A . n C 3 27 ASN 27 27 27 ASN ASN A . n C 3 28 PRO 28 28 28 PRO PRO A . n C 3 29 ARG 29 29 29 ARG ARG A . n C 3 30 MET 30 30 30 MET MET A . n C 3 31 ARG 31 31 31 ARG ARG A . n C 3 32 ASN 32 32 32 ASN ASN A . n C 3 33 SER 33 33 33 SER SER A . n C 3 34 GLU 34 34 34 GLU GLU A . n C 3 35 ILE 35 35 35 ILE ILE A . n C 3 36 SER 36 36 36 SER SER A . n C 3 37 LYS 37 37 37 LYS LYS A . n C 3 38 GLN 38 38 38 GLN GLN A . n C 3 39 LEU 39 39 39 LEU LEU A . n C 3 40 GLY 40 40 40 GLY GLY A . n C 3 41 TYR 41 41 41 TYR TYR A . n C 3 42 GLN 42 42 42 GLN GLN A . n C 3 43 TRP 43 43 43 TRP TRP A . n C 3 44 LYS 44 44 44 LYS LYS A . n C 3 45 MET 45 45 45 MET MET A . n C 3 46 LEU 46 46 46 LEU LEU A . n C 3 47 THR 47 47 47 THR THR A . n C 3 48 GLU 48 48 48 GLU GLU A . n C 3 49 ALA 49 49 49 ALA ALA A . n C 3 50 GLU 50 50 50 GLU GLU A . n C 3 51 LYS 51 51 51 LYS LYS A . n C 3 52 TRP 52 52 52 TRP TRP A . n C 3 53 PRO 53 53 53 PRO PRO A . n C 3 54 PHE 54 54 54 PHE PHE A . n C 3 55 PHE 55 55 55 PHE PHE A . n C 3 56 GLN 56 56 56 GLN GLN A . n C 3 57 GLU 57 57 57 GLU GLU A . n C 3 58 ALA 58 58 58 ALA ALA A . n C 3 59 GLN 59 59 59 GLN GLN A . n C 3 60 LYS 60 60 60 LYS LYS A . n C 3 61 LEU 61 61 61 LEU LEU A . n C 3 62 GLN 62 62 62 GLN GLN A . n C 3 63 ALA 63 63 63 ALA ALA A . n C 3 64 MET 64 64 64 MET MET A . n C 3 65 HIS 65 65 65 HIS HIS A . n C 3 66 ARG 66 66 66 ARG ARG A . n C 3 67 GLU 67 67 67 GLU GLU A . n C 3 68 LYS 68 68 68 LYS LYS A . n C 3 69 TYR 69 69 69 TYR TYR A . n C 3 70 PRO 70 70 70 PRO PRO A . n C 3 71 ASN 71 71 71 ASN ASN A . n C 3 72 TYR 72 72 72 TYR TYR A . n C 3 73 LYS 73 73 73 LYS LYS A . n C 3 74 TYR 74 74 74 TYR TYR A . n C 3 75 ARG 75 75 75 ARG ARG A . n C 3 76 LYS 76 76 76 LYS LYS A . n C 3 77 GLY 77 77 77 GLY GLY A . n C 3 78 GLU 78 78 78 GLU GLU A . n C 3 79 THR 79 79 79 THR THR A . n C 3 80 LYS 80 80 80 LYS LYS A . n C 3 81 LYS 81 81 81 LYS LYS A . n C 3 82 LYS 82 82 82 LYS LYS A . n C 3 83 PHE 83 83 83 PHE PHE A . n C 3 84 LYS 84 84 84 LYS LYS A . n C 3 85 ASP 85 85 85 ASP ASP A . n C 3 86 PRO 86 86 86 PRO PRO A . n C 3 87 ASN 87 87 87 ASN ASN A . n C 3 88 ALA 88 88 88 ALA ALA A . n C 3 89 PRO 89 89 89 PRO PRO A . n C 3 90 LYS 90 90 90 LYS LYS A . n C 3 91 ARG 91 91 91 ARG ARG A . n C 3 92 PRO 92 92 92 PRO PRO A . n C 3 93 PRO 93 93 93 PRO PRO A . n C 3 94 SER 94 94 94 SER SER A . n C 3 95 ALA 95 95 95 ALA ALA A . n C 3 96 PHE 96 96 96 PHE PHE A . n C 3 97 PHE 97 97 97 PHE PHE A . n C 3 98 LEU 98 98 98 LEU LEU A . n C 3 99 PHE 99 99 99 PHE PHE A . n C 3 100 CYS 100 100 100 CYS CYS A . n C 3 101 SER 101 101 101 SER SER A . n C 3 102 GLU 102 102 102 GLU GLU A . n C 3 103 TYR 103 103 103 TYR TYR A . n C 3 104 ARG 104 104 104 ARG ARG A . n C 3 105 PRO 105 105 105 PRO PRO A . n C 3 106 LYS 106 106 106 LYS LYS A . n C 3 107 ILE 107 107 107 ILE ILE A . n C 3 108 LYS 108 108 108 LYS LYS A . n C 3 109 GLY 109 109 109 GLY GLY A . n C 3 110 GLU 110 110 110 GLU GLU A . n C 3 111 HIS 111 111 111 HIS HIS A . n C 3 112 PRO 112 112 112 PRO PRO A . n C 3 113 GLY 113 113 113 GLY GLY A . n C 3 114 LEU 114 114 114 LEU LEU A . n C 3 115 SER 115 115 115 SER SER A . n C 3 116 ILE 116 116 116 ILE ILE A . n C 3 117 GLY 117 117 117 GLY GLY A . n C 3 118 ASP 118 118 118 ASP ASP A . n C 3 119 VAL 119 119 119 VAL VAL A . n C 3 120 ALA 120 120 120 ALA ALA A . n C 3 121 LYS 121 121 121 LYS LYS A . n C 3 122 LYS 122 122 122 LYS LYS A . n C 3 123 LEU 123 123 123 LEU LEU A . n C 3 124 GLY 124 124 124 GLY GLY A . n C 3 125 GLU 125 125 125 GLU GLU A . n C 3 126 MET 126 126 126 MET MET A . n C 3 127 TRP 127 127 127 TRP TRP A . n C 3 128 ASN 128 128 128 ASN ASN A . n C 3 129 ASN 129 129 129 ASN ASN A . n C 3 130 THR 130 130 130 THR THR A . n C 3 131 ALA 131 131 131 ALA ALA A . n C 3 132 ALA 132 132 132 ALA ALA A . n C 3 133 ASP 133 133 133 ASP ASP A . n C 3 134 ASP 134 134 134 ASP ASP A . n C 3 135 LYS 135 135 135 LYS LYS A . n C 3 136 GLN 136 136 136 GLN GLN A . n C 3 137 PRO 137 137 137 PRO PRO A . n C 3 138 TYR 138 138 138 TYR TYR A . n C 3 139 GLU 139 139 139 GLU GLU A . n C 3 140 LYS 140 140 140 LYS LYS A . n C 3 141 LYS 141 141 141 LYS LYS A . n C 3 142 ALA 142 142 142 ALA ALA A . n C 3 143 ALA 143 143 143 ALA ALA A . n C 3 144 LYS 144 144 144 LYS LYS A . n C 3 145 LEU 145 145 145 LEU LEU A . n C 3 146 LYS 146 146 146 LYS LYS A . n C 3 147 GLU 147 147 147 GLU GLU A . n C 3 148 LYS 148 148 148 LYS LYS A . n C 3 149 TYR 149 149 149 TYR TYR A . n C 3 150 GLU 150 150 150 GLU GLU A . n C 3 151 LYS 151 151 151 LYS LYS A . n C 3 152 ASP 152 152 152 ASP ASP A . n C 3 153 ILE 153 153 153 ILE ILE A . n C 3 154 ALA 154 154 154 ALA ALA A . n C 3 155 ALA 155 155 155 ALA ALA A . n C 3 156 TYR 156 156 156 TYR TYR A . n C 3 157 ARG 157 157 157 ARG ARG A . n C 3 158 ALA 158 158 158 ALA ALA A . n C 3 159 LYS 159 159 159 LYS LYS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-07-25 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE The protein is a chimeric protein, a hybrid, made from the HMG-box domain from human SRY, comprising residues 56-130 followed by residues 82-165 of rat HMGB1 ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HZ2 A LYS 76 ? ? OE1 A GLU 78 ? ? 1.52 2 1 OE2 A GLU 78 ? ? HZ2 A LYS 81 ? ? 1.58 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 3 ? ? -84.37 46.94 2 1 MET A 30 ? ? 34.12 50.89 3 1 ASN A 71 ? ? -130.15 -52.94 4 1 LYS A 76 ? ? -67.28 98.74 5 1 GLU A 78 ? ? -73.12 -118.11 6 1 THR A 79 ? ? -174.34 -127.19 7 1 LYS A 81 ? ? -88.68 37.80 8 1 PRO A 112 ? ? -77.30 49.94 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2GZK 'double helix' 2GZK 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 16 1_555 -0.977 -0.383 0.254 -3.821 -0.374 2.979 1 B_DG201:DC232_C B 201 ? C 232 ? 19 1 1 A DG 2 1_555 B DC 15 1_555 -0.839 -0.246 0.149 3.217 -1.058 4.166 2 B_DG202:DC231_C B 202 ? C 231 ? 19 1 1 A DG 3 1_555 B DC 14 1_555 -0.555 -0.274 0.623 9.679 3.166 -1.266 3 B_DG203:DC230_C B 203 ? C 230 ? 19 1 1 A DA 4 1_555 B DT 13 1_555 -0.042 -0.219 -0.433 -12.645 0.803 6.657 4 B_DA204:DT229_C B 204 ? C 229 ? 20 1 1 A DT 5 1_555 B DA 12 1_555 -0.339 -0.234 0.149 -0.945 -7.882 0.008 5 B_DT205:DA228_C B 205 ? C 228 ? 20 1 1 A DC 6 1_555 B DG 11 1_555 0.393 -0.062 0.060 -7.116 -0.454 2.575 6 B_DC206:DG227_C B 206 ? C 227 ? 19 1 1 A DT 7 1_555 B DA 10 1_555 -0.641 -0.156 -0.375 2.815 3.673 -6.750 7 B_DT207:DA226_C B 207 ? C 226 ? 20 1 1 A DA 8 1_555 B DT 9 1_555 0.001 -0.123 0.145 3.229 -1.133 -6.646 8 B_DA208:DT225_C B 208 ? C 225 ? 20 1 1 A DA 9 1_555 B DT 8 1_555 0.128 -0.221 -0.109 -3.287 0.657 -2.992 9 B_DA209:DT224_C B 209 ? C 224 ? 20 1 1 A DA 10 1_555 B DT 7 1_555 0.527 -0.002 -0.244 1.588 -3.329 -10.004 10 B_DA210:DT223_C B 210 ? C 223 ? 20 1 1 A DC 11 1_555 B DG 6 1_555 0.852 -0.231 -0.102 6.426 -13.486 3.825 11 B_DC211:DG222_C B 211 ? C 222 ? 19 1 1 A DA 12 1_555 B DT 5 1_555 -0.264 -0.312 0.053 0.750 -4.935 4.965 12 B_DA212:DT221_C B 212 ? C 221 ? 20 1 1 A DA 13 1_555 B DT 4 1_555 0.124 0.012 -0.243 -8.854 1.016 -10.108 13 B_DA213:DT220_C B 213 ? C 220 ? 20 1 1 A DT 14 1_555 B DA 3 1_555 -1.090 -0.108 0.062 3.169 -9.783 -10.062 14 B_DT214:DA219_C B 214 ? C 219 ? 20 1 1 A DG 15 1_555 B DC 2 1_555 -0.074 -0.129 -0.003 2.791 -0.575 1.994 15 B_DG215:DC218_C B 215 ? C 218 ? 19 1 1 A DC 16 1_555 B DG 1 1_555 0.884 -0.375 0.213 -2.213 0.376 2.100 16 B_DC216:DG217_C B 216 ? C 217 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 16 1_555 A DG 2 1_555 B DC 15 1_555 0.029 0.442 3.236 -5.556 19.759 26.987 -2.571 -0.987 2.847 36.398 10.235 33.790 1 BB_DG201DG202:DC231DC232_CC B 201 ? C 232 ? B 202 ? C 231 ? 1 A DG 2 1_555 B DC 15 1_555 A DG 3 1_555 B DC 14 1_555 -0.985 2.334 3.645 -3.697 18.493 21.101 -1.298 0.803 4.376 41.389 8.275 28.229 2 BB_DG202DG203:DC230DC231_CC B 202 ? C 231 ? B 203 ? C 230 ? 1 A DG 3 1_555 B DC 14 1_555 A DA 4 1_555 B DT 13 1_555 0.794 0.791 5.250 -1.381 26.657 29.671 -4.178 -1.445 4.450 42.760 2.216 39.709 3 BB_DG203DA204:DT229DC230_CC B 203 ? C 230 ? B 204 ? C 229 ? 1 A DA 4 1_555 B DT 13 1_555 A DT 5 1_555 B DA 12 1_555 -0.188 -0.156 3.072 -4.318 2.307 34.528 -0.590 -0.304 3.056 3.863 7.229 34.863 4 BB_DA204DT205:DA228DT229_CC B 204 ? C 229 ? B 205 ? C 228 ? 1 A DT 5 1_555 B DA 12 1_555 A DC 6 1_555 B DG 11 1_555 -0.152 -1.346 3.625 1.696 -11.849 39.647 -0.421 0.427 3.847 -17.006 -2.434 41.345 5 BB_DT205DC206:DG227DA228_CC B 205 ? C 228 ? B 206 ? C 227 ? 1 A DC 6 1_555 B DG 11 1_555 A DT 7 1_555 B DA 10 1_555 -0.480 0.214 3.131 3.919 -7.089 31.373 1.563 1.512 2.934 -12.843 -7.099 32.376 6 BB_DC206DT207:DA226DG227_CC B 206 ? C 227 ? B 207 ? C 226 ? 1 A DT 7 1_555 B DA 10 1_555 A DA 8 1_555 B DT 9 1_555 -0.287 1.176 4.012 -1.549 9.939 29.047 -0.297 0.150 4.187 19.108 2.977 30.704 7 BB_DT207DA208:DT225DA226_CC B 207 ? C 226 ? B 208 ? C 225 ? 1 A DA 8 1_555 B DT 9 1_555 A DA 9 1_555 B DT 8 1_555 -1.024 0.689 3.516 -4.187 11.730 35.165 -0.679 0.976 3.649 18.705 6.678 37.239 8 BB_DA208DA209:DT224DT225_CC B 208 ? C 225 ? B 209 ? C 224 ? 1 A DA 9 1_555 B DT 8 1_555 A DA 10 1_555 B DT 7 1_555 -0.202 -1.100 3.177 0.689 0.427 35.634 -1.857 0.427 3.160 0.697 -1.125 35.643 9 BB_DA209DA210:DT223DT224_CC B 209 ? C 224 ? B 210 ? C 223 ? 1 A DA 10 1_555 B DT 7 1_555 A DC 11 1_555 B DG 6 1_555 1.212 0.363 3.265 1.885 -13.651 37.972 2.057 -1.547 3.019 -20.186 -2.788 40.309 10 BB_DA210DC211:DG222DT223_CC B 210 ? C 223 ? B 211 ? C 222 ? 1 A DC 11 1_555 B DG 6 1_555 A DA 12 1_555 B DT 5 1_555 0.007 0.115 3.139 0.803 11.025 41.138 -0.920 0.068 3.069 15.358 -1.119 42.535 11 BB_DC211DA212:DT221DG222_CC B 211 ? C 222 ? B 212 ? C 221 ? 1 A DA 12 1_555 B DT 5 1_555 A DA 13 1_555 B DT 4 1_555 -1.666 0.857 4.637 0.633 32.042 20.102 -5.299 2.710 3.199 58.703 -1.160 37.691 12 BB_DA212DA213:DT220DT221_CC B 212 ? C 221 ? B 213 ? C 220 ? 1 A DA 13 1_555 B DT 4 1_555 A DT 14 1_555 B DA 3 1_555 -0.722 0.657 2.963 -5.036 0.692 24.561 1.323 0.276 3.064 1.605 11.678 25.073 13 BB_DA213DT214:DA219DT220_CC B 213 ? C 220 ? B 214 ? C 219 ? 1 A DT 14 1_555 B DA 3 1_555 A DG 15 1_555 B DC 2 1_555 0.300 2.098 3.563 0.428 21.186 31.336 -0.309 -0.393 4.133 34.701 -0.701 37.679 14 BB_DT214DG215:DC218DA219_CC B 214 ? C 219 ? B 215 ? C 218 ? 1 A DG 15 1_555 B DC 2 1_555 A DC 16 1_555 B DG 1 1_555 0.217 0.443 3.337 -0.791 15.040 43.257 -0.804 -0.351 3.304 19.702 1.036 45.685 15 BB_DG215DC216:DG217DC218_CC B 215 ? C 218 ? B 216 ? C 217 ? #