HEADER TRANSCRIPTION/RNA 12-MAY-06 2GZT OBSLTE 15-JAN-08 2GZT 3BOY TITLE CRYSTAL STRUCTURE OF THE HUTP ANTITERMINATION COMPLEX BOUND TITLE 2 TO THE HUT MRNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUT OPERON POSITIVE REGULATORY PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: HUTP; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'- COMPND 9 R(*UP*UP*UP*AP*GP*UP*UP*UP*UP*UP*AP*GP*UP*UP*UP*UP*UP*AP*GP COMPND 10 *UP*UP*U)-3'; COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_COMMON: BACTERIA; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET5A, PETHP4; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES KEYWDS HUTP, RNA BINDING, HUTP-RNA COMPLEX, ANTITERMINATION, KEYWDS 2 TRANSCRIPTION REGULATION, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 3 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 4 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 5 RSGI, TRANSCRIPTION/RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.S.KUMAREVEL,D.BALASUNDARESAN,J.JEYAKANTHAN,A.SHINKAI, AUTHOR 2 S.YOKOYAMA,P.K.R.KUMAR,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 3 INITIATIVE (RSGI) REVDAT 2 15-JAN-08 2GZT 1 OBSLTE REVDAT 1 15-MAY-07 2GZT 0 JRNL AUTH T.KUMAREVEL,D.BALASUNDARESAN,J.JEYAKANTHAN, JRNL AUTH 2 A.SHINKAI,S.YOKOYAMA,P.K.R.KUMAR JRNL TITL STRUCTURAL BASIS OF THE HUTP ANTITERMINATION JRNL TITL 2 COMPLEX:REVELATION OF THE MRNA UNWINDING DURING JRNL TITL 3 TRANSCRIPTION REGULATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.KUMAREVEL,Z.FUJIMOTO,P.KARTHE,M.ODA,H.MIZUNO, REMARK 1 AUTH 2 P.K.R.KUMAR REMARK 1 TITL CRYSTAL STRUCTURE OF ACTIVATED HUTP: AN RNA REMARK 1 TITL 2 BINDING PROTEIN THAT REGULATES TRANSCRIPTION OF REMARK 1 TITL 3 THE HUT OPERON IN BACILLUS SUBTILIS REMARK 1 REF STRUCTURE V. 12 1269 2004 REMARK 1 REFN ASTM STRUE6 UK ISSN 0969-2126 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.KUMAREVEL,S.C.B.GOPINATH,S.NISHIKAWA,H.MIZUNO, REMARK 1 AUTH 2 P.K.R.KUMAR REMARK 1 TITL IDENTIFICATION OF IMPORTANT CHEMICAL GROUPS OF THE REMARK 1 TITL 2 HUT MRNA FOR HUTP INTERACTIONS THAT REGULATE THE REMARK 1 TITL 3 HUT OPERON IN BACILLUS SUBTILIS REMARK 1 REF NUCLEIC ACIDS RES. V. 32 3904 2004 REMARK 1 REFN ASTM NARHAD UK ISSN 0305-1048 REMARK 1 REFERENCE 3 REMARK 1 AUTH T.KUMAREVEL,H.MIZUNO,P.K.R.KUMAR REMARK 1 TITL STRUCTURAL BASIS OF HUTP-MEDIATED ANTI-TERMINATION REMARK 1 TITL 2 AND ROLES OF THE MG2+ ION AND L-HISTIDINE LIGAND REMARK 1 REF NATURE V. 434 183 2005 REMARK 1 REFN ASTM NATUAS UK ISSN 0028-0836 REMARK 1 REFERENCE 4 REMARK 1 AUTH T.KUMAREVEL,H.MIZUNO,P.K.R.KUMAR REMARK 1 TITL CHARACTERIZATION OF THE METAL ION BINDING SITE IN REMARK 1 TITL 2 THE ANTI-TERMINATOR PROTEIN, HUTP, OF BACILLUS REMARK 1 TITL 3 SUBTILIS REMARK 1 REF NUCLEIC ACIDS RES. V. 33 5494 2005 REMARK 1 REFN ASTM NARHAD UK ISSN 0305-1048 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1456481.540 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 45893 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2445 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.44 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3241 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 169 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3393 REMARK 3 NUCLEIC ACID ATOMS : 435 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 406 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.19 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.19 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : MASK REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 64.23 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2GZT COMPLIES WITH FORMAT V. 3.1, 01-AUG-2007 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ. REMARK 100 THE RCSB ID CODE IS RCSB037751. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-2006 REMARK 200 TEMPERATURE (KELVIN) : 298.0 REMARK 200 PH : 7.40 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI II CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48341 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.36200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, AUTOMR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, HEPES, MGCL2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, PH 7.40 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 1/2+X,1/2+Y,Z REMARK 290 4555 1/2-X,1/2+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.81500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.23500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.81500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.23500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMER REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -20.50458 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 59.34767 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 U D 22 O5' C5' C4' O4' C3' O3' C2' REMARK 470 U D 22 O2' C1' N1 C2 O2 N3 C4 REMARK 470 U D 22 O4 C5 C6 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU A 15 CD1 REMARK 480 LEU A 17 CD2 REMARK 480 THR A 25 CB OG1 CG2 REMARK 480 GLU A 29 CG CD OE1 OE2 REMARK 480 LYS A 36 CD CE NZ REMARK 480 SER A 66 OG REMARK 480 GLU A 67 CG CD OE1 OE2 REMARK 480 ARG A 70 CG NH2 REMARK 480 GLU A 81 OE2 REMARK 480 LEU B 15 CD1 REMARK 480 LEU B 17 CD2 REMARK 480 GLU B 29 CG CD OE1 OE2 REMARK 480 LYS B 36 CD CE NZ REMARK 480 SER B 66 OG REMARK 480 GLU B 67 CG CD OE1 OE2 REMARK 480 GLU B 81 OE2 REMARK 480 LEU C 15 CD1 REMARK 480 LEU C 17 CD2 REMARK 480 THR C 25 CB OG1 CG2 REMARK 480 GLU C 29 CG CD OE1 OE2 REMARK 480 SER C 66 OG REMARK 480 GLU C 67 CG CD OE1 OE2 REMARK 480 ARG C 70 CG NH2 REMARK 480 GLU C 81 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 OE2 GLU A 81 O HOH A 2082 2.10 REMARK 500 OE2 GLU B 67 O HOH B 3042 2.11 REMARK 500 O2' U D 7 OG1 THR A 56 2.12 REMARK 500 NH2 ARG C 32 O HOH C 1078 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 67 OE2 GLU C 23 3546 0.82 REMARK 500 OE2 GLU A 67 OE1 GLU C 23 3546 1.34 REMARK 500 OE1 GLU A 67 CD GLU C 23 3546 1.44 REMARK 500 NH2 ARG C 70 O ILE C 148 2556 1.53 REMARK 500 NH2 ARG B 32 CA ARG C 32 1545 1.58 REMARK 500 NH2 ARG B 32 C ARG C 32 1545 1.66 REMARK 500 NH2 ARG A 70 OXT ILE B 148 2556 1.68 REMARK 500 OXT ILE A 148 NH1 ARG B 70 2556 1.75 REMARK 500 CD GLU A 67 OE1 GLU C 23 3546 1.77 REMARK 500 OE1 GLU A 67 OE1 GLU C 23 3546 1.88 REMARK 500 NH2 ARG B 32 O ARG C 32 1545 1.91 REMARK 500 NH1 ARG B 32 O ARG C 32 1545 1.96 REMARK 500 CD GLU A 67 OE2 GLU C 23 3546 2.04 REMARK 500 CD GLU A 67 CD GLU C 23 3546 2.16 REMARK 500 CZ ARG B 32 O ARG C 32 1545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCELIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER B 66 CB SER B 66 OG -0.114 REMARK 500 GLU B 67 CB GLU B 67 CG 0.121 REMARK 500 GLU B 81 CD GLU B 81 OE2 0.116 REMARK 500 LEU C 17 CG LEU C 17 CD2 -0.227 REMARK 500 GLU C 29 CB GLU C 29 CG -0.155 REMARK 500 GLU C 81 CD GLU C 81 OE2 0.191 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCELIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U D 1 C3' - O3' - P ANGL. DEV. = 9.0 DEGREES REMARK 500 U D 7 C3' - O3' - P ANGL. DEV. = 10.0 DEGREES REMARK 500 U D 14 C3' - O3' - P ANGL. DEV. = 9.7 DEGREES REMARK 500 GLU B 81 CG - CD - OE2 ANGL. DEV. = -14.7 DEGREES REMARK 500 LEU C 17 CB - CG - CD2 ANGL. DEV. = 15.7 DEGREES REMARK 500 GLU C 81 CG - CD - OE2 ANGL. DEV. = -17.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 93 -89.35 -117.58 REMARK 500 PRO A 132 48.06 -74.74 REMARK 500 LEU B 93 -89.94 -116.53 REMARK 500 PRO B 132 47.55 -75.09 REMARK 500 LEU C 93 -88.56 -115.74 REMARK 500 PRO C 132 46.97 -75.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 81 0.12 SIDE_CHAIN REMARK 500 GLU B 81 0.13 SIDE_CHAIN REMARK 500 GLU C 81 0.15 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M=MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 332 DISTANCE = 5.68 ANGSTROMS REMARK 525 HOH A2105 DISTANCE = 7.88 ANGSTROMS REMARK 525 HOH A2110 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH A2121 DISTANCE = 6.88 ANGSTROMS REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HIS C 1001 REMARK 615 HIS A 2001 REMARK 615 HIS B 3001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1VEA RELATED DB: PDB REMARK 900 RELATED ID: 1WPT RELATED DB: PDB REMARK 900 RELATED ID: 1WMQ RELATED DB: PDB REMARK 900 RELATED ID: 1WPU RELATED DB: PDB REMARK 900 RELATED ID: 1WRQ RELATED DB: PDB REMARK 900 RELATED ID: 1WPV RELATED DB: PDB DBREF 2GZT A 2 148 UNP P10943 HUTP_BACSU 1 147 DBREF 2GZT B 2 148 UNP P10943 HUTP_BACSU 1 147 DBREF 2GZT C 2 148 UNP P10943 HUTP_BACSU 1 147 SEQADV 2GZT ILE A 51 UNP P10943 VAL 50 ENGINEERED SEQADV 2GZT ILE B 51 UNP P10943 VAL 50 ENGINEERED SEQADV 2GZT ILE C 51 UNP P10943 VAL 50 ENGINEERED SEQRES 1 A 147 THR LEU HIS LYS GLU ARG ARG ILE GLY ARG LEU SER VAL SEQRES 2 A 147 LEU LEU LEU LEU ASN GLU ALA GLU GLU SER THR GLN VAL SEQRES 3 A 147 GLU GLU LEU GLU ARG ASP GLY TRP LYS VAL CYS LEU GLY SEQRES 4 A 147 LYS VAL GLY SER MET ASP ALA HIS LYS VAL ILE ALA ALA SEQRES 5 A 147 ILE GLU THR ALA SER LYS LYS SER GLY VAL ILE GLN SER SEQRES 6 A 147 GLU GLY TYR ARG GLU SER HIS ALA LEU TYR HIS ALA THR SEQRES 7 A 147 MET GLU ALA LEU HIS GLY VAL THR ARG GLY GLU MET LEU SEQRES 8 A 147 LEU GLY SER LEU LEU ARG THR VAL GLY LEU ARG PHE ALA SEQRES 9 A 147 VAL LEU ARG GLY ASN PRO TYR GLU SER GLU ALA GLU GLY SEQRES 10 A 147 ASP TRP ILE ALA VAL SER LEU TYR GLY THR ILE GLY ALA SEQRES 11 A 147 PRO ILE LYS GLY LEU GLU HIS GLU THR PHE GLY VAL GLY SEQRES 12 A 147 ILE ASN HIS ILE SEQRES 1 B 147 THR LEU HIS LYS GLU ARG ARG ILE GLY ARG LEU SER VAL SEQRES 2 B 147 LEU LEU LEU LEU ASN GLU ALA GLU GLU SER THR GLN VAL SEQRES 3 B 147 GLU GLU LEU GLU ARG ASP GLY TRP LYS VAL CYS LEU GLY SEQRES 4 B 147 LYS VAL GLY SER MET ASP ALA HIS LYS VAL ILE ALA ALA SEQRES 5 B 147 ILE GLU THR ALA SER LYS LYS SER GLY VAL ILE GLN SER SEQRES 6 B 147 GLU GLY TYR ARG GLU SER HIS ALA LEU TYR HIS ALA THR SEQRES 7 B 147 MET GLU ALA LEU HIS GLY VAL THR ARG GLY GLU MET LEU SEQRES 8 B 147 LEU GLY SER LEU LEU ARG THR VAL GLY LEU ARG PHE ALA SEQRES 9 B 147 VAL LEU ARG GLY ASN PRO TYR GLU SER GLU ALA GLU GLY SEQRES 10 B 147 ASP TRP ILE ALA VAL SER LEU TYR GLY THR ILE GLY ALA SEQRES 11 B 147 PRO ILE LYS GLY LEU GLU HIS GLU THR PHE GLY VAL GLY SEQRES 12 B 147 ILE ASN HIS ILE SEQRES 1 C 147 THR LEU HIS LYS GLU ARG ARG ILE GLY ARG LEU SER VAL SEQRES 2 C 147 LEU LEU LEU LEU ASN GLU ALA GLU GLU SER THR GLN VAL SEQRES 3 C 147 GLU GLU LEU GLU ARG ASP GLY TRP LYS VAL CYS LEU GLY SEQRES 4 C 147 LYS VAL GLY SER MET ASP ALA HIS LYS VAL ILE ALA ALA SEQRES 5 C 147 ILE GLU THR ALA SER LYS LYS SER GLY VAL ILE GLN SER SEQRES 6 C 147 GLU GLY TYR ARG GLU SER HIS ALA LEU TYR HIS ALA THR SEQRES 7 C 147 MET GLU ALA LEU HIS GLY VAL THR ARG GLY GLU MET LEU SEQRES 8 C 147 LEU GLY SER LEU LEU ARG THR VAL GLY LEU ARG PHE ALA SEQRES 9 C 147 VAL LEU ARG GLY ASN PRO TYR GLU SER GLU ALA GLU GLY SEQRES 10 C 147 ASP TRP ILE ALA VAL SER LEU TYR GLY THR ILE GLY ALA SEQRES 11 C 147 PRO ILE LYS GLY LEU GLU HIS GLU THR PHE GLY VAL GLY SEQRES 12 C 147 ILE ASN HIS ILE SEQRES 1 D 22 U U U A G U U U U U A G U SEQRES 2 D 22 U U U U A G U U U HET MG C1002 1 HET MG A2002 1 HET MG B3002 1 HET HIS C1001 11 HET HIS A2001 11 HET HIS B3001 11 HETNAM MG MAGNESIUM ION HETNAM HIS HISTIDINE FORMUL 5 MG 3(MG 2+) FORMUL 8 HIS 3(C6 H10 N3 O2 1+) FORMUL 11 HOH *406(H2 O) HELIX 1 1 ARG A 8 ASN A 19 1 12 HELIX 2 2 THR A 25 ASP A 33 1 9 HELIX 3 3 ASP A 46 SER A 61 1 16 HELIX 4 4 TYR A 69 ARG A 88 1 20 HELIX 5 5 LEU A 93 LEU A 97 5 5 HELIX 6 6 SER A 114 GLY A 118 5 5 HELIX 7 7 HIS B 4 ARG B 7 5 4 HELIX 8 8 ARG B 8 ASN B 19 1 12 HELIX 9 9 GLU B 22 ASP B 33 1 12 HELIX 10 10 ASP B 46 SER B 61 1 16 HELIX 11 11 TYR B 69 ARG B 88 1 20 HELIX 12 12 LEU B 93 LEU B 97 5 5 HELIX 13 13 SER B 114 GLY B 118 5 5 HELIX 14 14 HIS C 4 ARG C 7 5 4 HELIX 15 15 ARG C 8 ASN C 19 1 12 HELIX 16 16 THR C 25 ARG C 32 1 8 HELIX 17 17 ASP C 46 SER C 61 1 16 HELIX 18 18 TYR C 69 ARG C 88 1 20 HELIX 19 19 LEU C 93 LEU C 97 5 5 HELIX 20 20 SER C 114 GLY C 118 5 5 SHEET 1 A 4 LYS A 36 SER A 44 0 SHEET 2 A 4 THR A 99 GLY A 109 -1 O LEU A 102 N VAL A 42 SHEET 3 A 4 TRP A 120 GLY A 130 -1 O TYR A 126 N ARG A 103 SHEET 4 A 4 GLU A 137 HIS A 147 -1 O ASN A 146 N ILE A 121 SHEET 1 B 4 LYS B 36 SER B 44 0 SHEET 2 B 4 THR B 99 GLY B 109 -1 O LEU B 102 N VAL B 42 SHEET 3 B 4 TRP B 120 GLY B 130 -1 O TYR B 126 N ARG B 103 SHEET 4 B 4 GLU B 137 HIS B 147 -1 O ASN B 146 N ILE B 121 SHEET 1 C 4 LYS C 36 SER C 44 0 SHEET 2 C 4 THR C 99 GLY C 109 -1 O LEU C 102 N VAL C 42 SHEET 3 C 4 TRP C 120 GLY C 130 -1 O TYR C 126 N ARG C 103 SHEET 4 C 4 GLU C 137 HIS C 147 -1 O ASN C 146 N ILE C 121 CRYST1 99.630 76.470 62.790 90.00 109.06 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010037 0.000000 0.003468 0.00000 SCALE2 0.000000 0.013077 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016850 0.00000