data_2H0J # _entry.id 2H0J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2H0J RCSB RCSB037777 WWPDB D_1000037777 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2H0E 'The same protein in the absence of inhibitor' unspecified PDB 2H0F 'The same protein in the presence of inhibitor, 8-azaxanthine' unspecified # _pdbx_database_status.entry_id 2H0J _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2006-05-15 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Rhee, S.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Structural and functional analysis of PucM, a hydrolase in the ureide pathway and a member of the transthyretin-related protein family. ; _citation.journal_abbrev Proc.Natl.Acad.Sci.Usa _citation.journal_volume 103 _citation.page_first 9790 _citation.page_last 9795 _citation.year 2006 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16782815 _citation.pdbx_database_id_DOI 10.1073/pnas.0600523103 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Jung, D.-K.' 1 primary 'Lee, Y.' 2 primary 'Park, S.G.' 3 primary 'Park, B.C.' 4 primary 'Kim, G.-H.' 5 primary 'Rhee, S.' 6 # _cell.length_a 72.956 _cell.length_b 72.956 _cell.length_c 145.127 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 2H0J _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 42 2 2' _symmetry.entry_id 2H0J _symmetry.Int_Tables_number 93 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transthyretin-like protein pucM' 13703.716 2 ? ? ? ? 2 non-polymer syn '5,6-DIAMINOPYRIMIDINE-2,4(1H,3H)-DIONE' 142.116 1 ? ? ? ? 3 water nat water 18.015 56 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)SEPESL(MSE)GKLTTHILDLTCGKPAANVKIGLKRLGESI(MSE)KEVYTNNDGRVDVPLLAGEEL(MSE)SGE YV(MSE)EFHAGDYFASKN(MSE)NAADQPFLTIVTVRFQLADPDAHYHIPLLLSPFGYQVYRGS ; _entity_poly.pdbx_seq_one_letter_code_can ;MSEPESLMGKLTTHILDLTCGKPAANVKIGLKRLGESIMKEVYTNNDGRVDVPLLAGEELMSGEYVMEFHAGDYFASKNM NAADQPFLTIVTVRFQLADPDAHYHIPLLLSPFGYQVYRGS ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 SER n 1 3 GLU n 1 4 PRO n 1 5 GLU n 1 6 SER n 1 7 LEU n 1 8 MSE n 1 9 GLY n 1 10 LYS n 1 11 LEU n 1 12 THR n 1 13 THR n 1 14 HIS n 1 15 ILE n 1 16 LEU n 1 17 ASP n 1 18 LEU n 1 19 THR n 1 20 CYS n 1 21 GLY n 1 22 LYS n 1 23 PRO n 1 24 ALA n 1 25 ALA n 1 26 ASN n 1 27 VAL n 1 28 LYS n 1 29 ILE n 1 30 GLY n 1 31 LEU n 1 32 LYS n 1 33 ARG n 1 34 LEU n 1 35 GLY n 1 36 GLU n 1 37 SER n 1 38 ILE n 1 39 MSE n 1 40 LYS n 1 41 GLU n 1 42 VAL n 1 43 TYR n 1 44 THR n 1 45 ASN n 1 46 ASN n 1 47 ASP n 1 48 GLY n 1 49 ARG n 1 50 VAL n 1 51 ASP n 1 52 VAL n 1 53 PRO n 1 54 LEU n 1 55 LEU n 1 56 ALA n 1 57 GLY n 1 58 GLU n 1 59 GLU n 1 60 LEU n 1 61 MSE n 1 62 SER n 1 63 GLY n 1 64 GLU n 1 65 TYR n 1 66 VAL n 1 67 MSE n 1 68 GLU n 1 69 PHE n 1 70 HIS n 1 71 ALA n 1 72 GLY n 1 73 ASP n 1 74 TYR n 1 75 PHE n 1 76 ALA n 1 77 SER n 1 78 LYS n 1 79 ASN n 1 80 MSE n 1 81 ASN n 1 82 ALA n 1 83 ALA n 1 84 ASP n 1 85 GLN n 1 86 PRO n 1 87 PHE n 1 88 LEU n 1 89 THR n 1 90 ILE n 1 91 VAL n 1 92 THR n 1 93 VAL n 1 94 ARG n 1 95 PHE n 1 96 GLN n 1 97 LEU n 1 98 ALA n 1 99 ASP n 1 100 PRO n 1 101 ASP n 1 102 ALA n 1 103 HIS n 1 104 TYR n 1 105 HIS n 1 106 ILE n 1 107 PRO n 1 108 LEU n 1 109 LEU n 1 110 LEU n 1 111 SER n 1 112 PRO n 1 113 PHE n 1 114 GLY n 1 115 TYR n 1 116 GLN n 1 117 VAL n 1 118 TYR n 1 119 ARG n 1 120 GLY n 1 121 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Bacillus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus subtilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1423 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PUCM_BACSU _struct_ref.pdbx_db_accession O32142 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSEPESLMGKLTTHILDLTCGKPAANVKIGLKRLGESIMKEVYTNNDGRVDVPLLAGEELMSGEYVMEFHAGDYFASKNM NAADQPFLTIVTVRFQLADPDAHYHIPLLLSPFGYQVYRGS ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2H0J A 1 ? 121 ? O32142 1 ? 121 ? 1 121 2 1 2H0J B 1 ? 121 ? O32142 1 ? 121 ? 1 121 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2H0J MSE A 1 ? UNP O32142 MET 1 'MODIFIED RESIDUE' 1 1 1 2H0J MSE A 8 ? UNP O32142 MET 8 'MODIFIED RESIDUE' 8 2 1 2H0J MSE A 39 ? UNP O32142 MET 39 'MODIFIED RESIDUE' 39 3 1 2H0J MSE A 61 ? UNP O32142 MET 61 'MODIFIED RESIDUE' 61 4 1 2H0J MSE A 67 ? UNP O32142 MET 67 'MODIFIED RESIDUE' 67 5 1 2H0J MSE A 80 ? UNP O32142 MET 80 'MODIFIED RESIDUE' 80 6 2 2H0J MSE B 1 ? UNP O32142 MET 1 'MODIFIED RESIDUE' 1 7 2 2H0J MSE B 8 ? UNP O32142 MET 8 'MODIFIED RESIDUE' 8 8 2 2H0J MSE B 39 ? UNP O32142 MET 39 'MODIFIED RESIDUE' 39 9 2 2H0J MSE B 61 ? UNP O32142 MET 61 'MODIFIED RESIDUE' 61 10 2 2H0J MSE B 67 ? UNP O32142 MET 67 'MODIFIED RESIDUE' 67 11 2 2H0J MSE B 80 ? UNP O32142 MET 80 'MODIFIED RESIDUE' 80 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 URN non-polymer . '5,6-DIAMINOPYRIMIDINE-2,4(1H,3H)-DIONE' 5,6-DIAMINOURACIL 'C4 H6 N4 O2' 142.116 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2H0J _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.52 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 65.07 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.1M ammonium acetate, 0.5M NaCl, 0.5M ammonium sulfate, pH 4.2, VAPOR DIFFUSION, temperature 295K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'BRUKER PROTEUM 300' _diffrn_detector.pdbx_collection_date 2005-10-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97144 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PAL/PLS BEAMLINE 4A' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97144 _diffrn_source.pdbx_synchrotron_site PAL/PLS _diffrn_source.pdbx_synchrotron_beamline 4A # _reflns.entry_id 2H0J _reflns.d_resolution_high 2.900 _reflns.d_resolution_low 30.000 _reflns.number_obs 9261 _reflns.pdbx_Rmerge_I_obs 0.107 _reflns.pdbx_netI_over_sigmaI 7.800 _reflns.pdbx_chi_squared 0.823 _reflns.pdbx_redundancy 6.700 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.number_all 9261 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.90 3.00 ? ? ? 0.546 ? ? 0.666 7.00 ? 888 100.00 ? 1 3.00 3.12 ? ? ? 0.372 ? ? 0.701 6.90 ? 917 100.00 ? 2 3.12 3.27 ? ? ? 0.297 ? ? 0.771 6.90 ? 885 100.00 ? 3 3.27 3.44 ? ? ? 0.186 ? ? 0.797 6.90 ? 909 100.00 ? 4 3.44 3.65 ? ? ? 0.144 ? ? 0.880 6.80 ? 903 100.00 ? 5 3.65 3.93 ? ? ? 0.12 ? ? 0.902 6.80 ? 905 100.00 ? 6 3.93 4.33 ? ? ? 0.088 ? ? 0.867 6.70 ? 929 100.00 ? 7 4.33 4.95 ? ? ? 0.06 ? ? 0.962 6.60 ? 937 100.00 ? 8 4.95 6.23 ? ? ? 0.06 ? ? 0.807 6.40 ? 952 100.00 ? 9 6.23 30.00 ? ? ? 0.041 ? ? 0.882 5.70 ? 1036 99.90 ? 10 # _refine.entry_id 2H0J _refine.ls_d_res_high 2.900 _refine.ls_d_res_low 30.000 _refine.pdbx_ls_sigma_F 991.00 _refine.ls_percent_reflns_obs 84.000 _refine.ls_number_reflns_obs 7765 _refine.ls_R_factor_R_work 0.211 _refine.ls_R_factor_R_free 0.271 _refine.ls_percent_reflns_R_free 8.400 _refine.ls_number_reflns_R_free 774 _refine.B_iso_mean 38.660 _refine.solvent_model_param_bsol 20.282 _refine.aniso_B[1][1] -3.611 _refine.aniso_B[2][2] -3.611 _refine.aniso_B[3][3] 7.222 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.pdbx_ls_sigma_I 2.0 _refine.ls_number_reflns_all 7765 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.211 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1770 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 56 _refine_hist.number_atoms_total 1836 _refine_hist.d_res_high 2.900 _refine_hist.d_res_low 30.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_mcbond_it ? 1.698 1.500 ? 'X-RAY DIFFRACTION' ? c_scbond_it ? 2.440 2.000 ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? 3.070 2.000 ? 'X-RAY DIFFRACTION' ? c_scangle_it ? 3.672 2.500 ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param ? 'X-RAY DIFFRACTION' 2 dau.param ? 'X-RAY DIFFRACTION' 3 water_rep.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 2H0J _struct.title 'Crystal structure of PucM in the presence of 5,6-diaminouracil' _struct.pdbx_descriptor 'Transthyretin-like protein pucM' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2H0J _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'BETA SANDWITCH, COMPLEX WITH DIAMINOURACIL, HIU, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # loop_ _struct_biol.id _struct_biol.details _struct_biol.pdbx_parent_biol_id 1 'Chain A and B forms independently a homotetramer by a crystallographic symmetry-related molecules' ? 2 ? ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 58 ? LEU A 60 ? GLU A 58 LEU A 60 5 ? 3 HELX_P HELX_P2 2 HIS A 70 ? SER A 77 ? HIS A 70 SER A 77 1 ? 8 HELX_P HELX_P3 3 HIS B 70 ? LYS B 78 ? HIS B 70 LYS B 78 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 8 C ? ? ? 1_555 A GLY 9 N ? ? A MSE 8 A GLY 9 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A ILE 38 C ? ? ? 1_555 A MSE 39 N ? ? A ILE 38 A MSE 39 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale ? ? A MSE 39 C ? ? ? 1_555 A LYS 40 N ? ? A MSE 39 A LYS 40 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale ? ? A LEU 60 C ? ? ? 1_555 A MSE 61 N ? ? A LEU 60 A MSE 61 1_555 ? ? ? ? ? ? ? 1.328 ? covale5 covale ? ? A MSE 61 C ? ? ? 1_555 A SER 62 N ? ? A MSE 61 A SER 62 1_555 ? ? ? ? ? ? ? 1.328 ? covale6 covale ? ? A VAL 66 C ? ? ? 1_555 A MSE 67 N ? ? A VAL 66 A MSE 67 1_555 ? ? ? ? ? ? ? 1.328 ? covale7 covale ? ? A MSE 67 C ? ? ? 1_555 A GLU 68 N ? ? A MSE 67 A GLU 68 1_555 ? ? ? ? ? ? ? 1.324 ? covale8 covale ? ? B MSE 8 C ? ? ? 1_555 B GLY 9 N ? ? B MSE 8 B GLY 9 1_555 ? ? ? ? ? ? ? 1.332 ? covale9 covale ? ? B ILE 38 C ? ? ? 1_555 B MSE 39 N ? ? B ILE 38 B MSE 39 1_555 ? ? ? ? ? ? ? 1.327 ? covale10 covale ? ? B MSE 39 C ? ? ? 1_555 B LYS 40 N ? ? B MSE 39 B LYS 40 1_555 ? ? ? ? ? ? ? 1.325 ? covale11 covale ? ? B LEU 60 C ? ? ? 1_555 B MSE 61 N ? ? B LEU 60 B MSE 61 1_555 ? ? ? ? ? ? ? 1.328 ? covale12 covale ? ? B MSE 61 C ? ? ? 1_555 B SER 62 N ? ? B MSE 61 B SER 62 1_555 ? ? ? ? ? ? ? 1.329 ? covale13 covale ? ? B VAL 66 C ? ? ? 1_555 B MSE 67 N ? ? B VAL 66 B MSE 67 1_555 ? ? ? ? ? ? ? 1.326 ? covale14 covale ? ? B MSE 67 C ? ? ? 1_555 B GLU 68 N ? ? B MSE 67 B GLU 68 1_555 ? ? ? ? ? ? ? 1.328 ? covale15 covale ? ? B ASN 79 C ? ? ? 1_555 B MSE 80 N ? ? B ASN 79 B MSE 80 1_555 ? ? ? ? ? ? ? 1.332 ? covale16 covale ? ? B MSE 80 C ? ? ? 1_555 B ASN 81 N ? ? B MSE 80 B ASN 81 1_555 ? ? ? ? ? ? ? 1.334 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? C ? 4 ? D ? 3 ? E ? 4 ? F ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? parallel E 3 4 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 22 ? PRO A 23 ? LYS A 22 PRO A 23 A 2 LYS A 10 ? ASP A 17 ? LYS A 10 ASP A 17 A 3 LEU A 55 ? ALA A 56 ? LEU A 55 ALA A 56 B 1 LYS A 22 ? PRO A 23 ? LYS A 22 PRO A 23 B 2 LYS A 10 ? ASP A 17 ? LYS A 10 ASP A 17 B 3 HIS A 103 ? SER A 111 ? HIS A 103 SER A 111 B 4 GLY A 114 ? VAL A 117 ? GLY A 114 VAL A 117 C 1 LYS A 40 ? TYR A 43 ? LYS A 40 TYR A 43 C 2 LYS A 28 ? ARG A 33 ? LYS A 28 ARG A 33 C 3 GLY A 63 ? PHE A 69 ? GLY A 63 PHE A 69 C 4 VAL A 91 ? LEU A 97 ? VAL A 91 LEU A 97 D 1 LYS B 22 ? PRO B 23 ? LYS B 22 PRO B 23 D 2 LYS B 10 ? ASP B 17 ? LYS B 10 ASP B 17 D 3 LEU B 55 ? ALA B 56 ? LEU B 55 ALA B 56 E 1 LYS B 22 ? PRO B 23 ? LYS B 22 PRO B 23 E 2 LYS B 10 ? ASP B 17 ? LYS B 10 ASP B 17 E 3 HIS B 103 ? SER B 111 ? HIS B 103 SER B 111 E 4 GLY B 114 ? VAL B 117 ? GLY B 114 VAL B 117 F 1 LYS B 40 ? TYR B 43 ? LYS B 40 TYR B 43 F 2 LYS B 28 ? ARG B 33 ? LYS B 28 ARG B 33 F 3 GLY B 63 ? PHE B 69 ? GLY B 63 PHE B 69 F 4 VAL B 91 ? LEU B 97 ? VAL B 91 LEU B 97 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS A 22 ? O LYS A 22 N ASP A 17 ? N ASP A 17 A 2 3 N LEU A 11 ? N LEU A 11 O LEU A 55 ? O LEU A 55 B 1 2 O LYS A 22 ? O LYS A 22 N ASP A 17 ? N ASP A 17 B 2 3 N HIS A 14 ? N HIS A 14 O LEU A 108 ? O LEU A 108 B 3 4 N LEU A 109 ? N LEU A 109 O GLN A 116 ? O GLN A 116 C 1 2 O VAL A 42 ? O VAL A 42 N ILE A 29 ? N ILE A 29 C 2 3 N GLY A 30 ? N GLY A 30 O GLU A 68 ? O GLU A 68 C 3 4 N TYR A 65 ? N TYR A 65 O PHE A 95 ? O PHE A 95 D 1 2 O LYS B 22 ? O LYS B 22 N ASP B 17 ? N ASP B 17 D 2 3 N LEU B 11 ? N LEU B 11 O LEU B 55 ? O LEU B 55 E 1 2 O LYS B 22 ? O LYS B 22 N ASP B 17 ? N ASP B 17 E 2 3 N THR B 12 ? N THR B 12 O TYR B 104 ? O TYR B 104 E 3 4 N LEU B 109 ? N LEU B 109 O GLN B 116 ? O GLN B 116 F 1 2 O VAL B 42 ? O VAL B 42 N ILE B 29 ? N ILE B 29 F 2 3 N GLY B 30 ? N GLY B 30 O GLU B 68 ? O GLU B 68 F 3 4 N TYR B 65 ? N TYR B 65 O PHE B 95 ? O PHE B 95 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 9 _struct_site.details 'BINDING SITE FOR RESIDUE URN A 122' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 HIS A 14 ? HIS A 14 . ? 1_555 ? 2 AC1 9 HIS A 14 ? HIS A 14 . ? 7_465 ? 3 AC1 9 ARG A 49 ? ARG A 49 . ? 1_555 ? 4 AC1 9 ARG A 49 ? ARG A 49 . ? 7_465 ? 5 AC1 9 HIS A 105 ? HIS A 105 . ? 7_465 ? 6 AC1 9 HIS A 105 ? HIS A 105 . ? 1_555 ? 7 AC1 9 PRO A 107 ? PRO A 107 . ? 1_555 ? 8 AC1 9 TYR A 118 ? TYR A 118 . ? 7_465 ? 9 AC1 9 TYR A 118 ? TYR A 118 . ? 1_555 ? # _database_PDB_matrix.entry_id 2H0J _database_PDB_matrix.origx[1][1] 1.00000 _database_PDB_matrix.origx[1][2] 0.00000 _database_PDB_matrix.origx[1][3] 0.00000 _database_PDB_matrix.origx[2][1] 0.00000 _database_PDB_matrix.origx[2][2] 1.00000 _database_PDB_matrix.origx[2][3] 0.00000 _database_PDB_matrix.origx[3][1] 0.00000 _database_PDB_matrix.origx[3][2] 0.00000 _database_PDB_matrix.origx[3][3] 1.00000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2H0J _atom_sites.fract_transf_matrix[1][1] 0.01371 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.01371 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.00689 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 GLU 3 3 ? ? ? A . n A 1 4 PRO 4 4 ? ? ? A . n A 1 5 GLU 5 5 ? ? ? A . n A 1 6 SER 6 6 ? ? ? A . n A 1 7 LEU 7 7 ? ? ? A . n A 1 8 MSE 8 8 8 MSE MSE A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 HIS 14 14 14 HIS HIS A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 CYS 20 20 20 CYS CYS A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 PRO 23 23 23 PRO PRO A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 ASN 26 26 26 ASN ASN A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 ARG 33 33 33 ARG ARG A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 MSE 39 39 39 MSE MSE A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 TYR 43 43 43 TYR TYR A . n A 1 44 THR 44 44 44 THR THR A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 MSE 61 61 61 MSE MSE A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 TYR 65 65 65 TYR TYR A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 MSE 67 67 67 MSE MSE A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 PHE 69 69 69 PHE PHE A . n A 1 70 HIS 70 70 70 HIS HIS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 ASP 73 73 73 ASP ASP A . n A 1 74 TYR 74 74 74 TYR TYR A . n A 1 75 PHE 75 75 75 PHE PHE A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 ASN 79 79 79 ASN ASN A . n A 1 80 MSE 80 80 ? ? ? A . n A 1 81 ASN 81 81 ? ? ? A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 GLN 85 85 85 GLN GLN A . n A 1 86 PRO 86 86 86 PRO PRO A . n A 1 87 PHE 87 87 87 PHE PHE A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 ARG 94 94 94 ARG ARG A . n A 1 95 PHE 95 95 95 PHE PHE A . n A 1 96 GLN 96 96 96 GLN GLN A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 HIS 103 103 103 HIS HIS A . n A 1 104 TYR 104 104 104 TYR TYR A . n A 1 105 HIS 105 105 105 HIS HIS A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 PRO 107 107 107 PRO PRO A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 PRO 112 112 112 PRO PRO A . n A 1 113 PHE 113 113 113 PHE PHE A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 TYR 115 115 115 TYR TYR A . n A 1 116 GLN 116 116 116 GLN GLN A . n A 1 117 VAL 117 117 117 VAL VAL A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 ARG 119 119 119 ARG ARG A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 SER 121 121 121 SER SER A . n B 1 1 MSE 1 1 ? ? ? B . n B 1 2 SER 2 2 ? ? ? B . n B 1 3 GLU 3 3 ? ? ? B . n B 1 4 PRO 4 4 ? ? ? B . n B 1 5 GLU 5 5 ? ? ? B . n B 1 6 SER 6 6 ? ? ? B . n B 1 7 LEU 7 7 ? ? ? B . n B 1 8 MSE 8 8 8 MSE MSE B . n B 1 9 GLY 9 9 9 GLY GLY B . n B 1 10 LYS 10 10 10 LYS LYS B . n B 1 11 LEU 11 11 11 LEU LEU B . n B 1 12 THR 12 12 12 THR THR B . n B 1 13 THR 13 13 13 THR THR B . n B 1 14 HIS 14 14 14 HIS HIS B . n B 1 15 ILE 15 15 15 ILE ILE B . n B 1 16 LEU 16 16 16 LEU LEU B . n B 1 17 ASP 17 17 17 ASP ASP B . n B 1 18 LEU 18 18 18 LEU LEU B . n B 1 19 THR 19 19 19 THR THR B . n B 1 20 CYS 20 20 20 CYS CYS B . n B 1 21 GLY 21 21 21 GLY GLY B . n B 1 22 LYS 22 22 22 LYS LYS B . n B 1 23 PRO 23 23 23 PRO PRO B . n B 1 24 ALA 24 24 24 ALA ALA B . n B 1 25 ALA 25 25 25 ALA ALA B . n B 1 26 ASN 26 26 26 ASN ASN B . n B 1 27 VAL 27 27 27 VAL VAL B . n B 1 28 LYS 28 28 28 LYS LYS B . n B 1 29 ILE 29 29 29 ILE ILE B . n B 1 30 GLY 30 30 30 GLY GLY B . n B 1 31 LEU 31 31 31 LEU LEU B . n B 1 32 LYS 32 32 32 LYS LYS B . n B 1 33 ARG 33 33 33 ARG ARG B . n B 1 34 LEU 34 34 34 LEU LEU B . n B 1 35 GLY 35 35 35 GLY GLY B . n B 1 36 GLU 36 36 36 GLU GLU B . n B 1 37 SER 37 37 37 SER SER B . n B 1 38 ILE 38 38 38 ILE ILE B . n B 1 39 MSE 39 39 39 MSE MSE B . n B 1 40 LYS 40 40 40 LYS LYS B . n B 1 41 GLU 41 41 41 GLU GLU B . n B 1 42 VAL 42 42 42 VAL VAL B . n B 1 43 TYR 43 43 43 TYR TYR B . n B 1 44 THR 44 44 44 THR THR B . n B 1 45 ASN 45 45 45 ASN ASN B . n B 1 46 ASN 46 46 46 ASN ASN B . n B 1 47 ASP 47 47 47 ASP ASP B . n B 1 48 GLY 48 48 48 GLY GLY B . n B 1 49 ARG 49 49 49 ARG ARG B . n B 1 50 VAL 50 50 50 VAL VAL B . n B 1 51 ASP 51 51 51 ASP ASP B . n B 1 52 VAL 52 52 52 VAL VAL B . n B 1 53 PRO 53 53 53 PRO PRO B . n B 1 54 LEU 54 54 54 LEU LEU B . n B 1 55 LEU 55 55 55 LEU LEU B . n B 1 56 ALA 56 56 56 ALA ALA B . n B 1 57 GLY 57 57 57 GLY GLY B . n B 1 58 GLU 58 58 58 GLU GLU B . n B 1 59 GLU 59 59 59 GLU GLU B . n B 1 60 LEU 60 60 60 LEU LEU B . n B 1 61 MSE 61 61 61 MSE MSE B . n B 1 62 SER 62 62 62 SER SER B . n B 1 63 GLY 63 63 63 GLY GLY B . n B 1 64 GLU 64 64 64 GLU GLU B . n B 1 65 TYR 65 65 65 TYR TYR B . n B 1 66 VAL 66 66 66 VAL VAL B . n B 1 67 MSE 67 67 67 MSE MSE B . n B 1 68 GLU 68 68 68 GLU GLU B . n B 1 69 PHE 69 69 69 PHE PHE B . n B 1 70 HIS 70 70 70 HIS HIS B . n B 1 71 ALA 71 71 71 ALA ALA B . n B 1 72 GLY 72 72 72 GLY GLY B . n B 1 73 ASP 73 73 73 ASP ASP B . n B 1 74 TYR 74 74 74 TYR TYR B . n B 1 75 PHE 75 75 75 PHE PHE B . n B 1 76 ALA 76 76 76 ALA ALA B . n B 1 77 SER 77 77 77 SER SER B . n B 1 78 LYS 78 78 78 LYS LYS B . n B 1 79 ASN 79 79 79 ASN ASN B . n B 1 80 MSE 80 80 80 MSE MSE B . n B 1 81 ASN 81 81 81 ASN ASN B . n B 1 82 ALA 82 82 82 ALA ALA B . n B 1 83 ALA 83 83 83 ALA ALA B . n B 1 84 ASP 84 84 84 ASP ASP B . n B 1 85 GLN 85 85 85 GLN GLN B . n B 1 86 PRO 86 86 86 PRO PRO B . n B 1 87 PHE 87 87 87 PHE PHE B . n B 1 88 LEU 88 88 88 LEU LEU B . n B 1 89 THR 89 89 89 THR THR B . n B 1 90 ILE 90 90 90 ILE ILE B . n B 1 91 VAL 91 91 91 VAL VAL B . n B 1 92 THR 92 92 92 THR THR B . n B 1 93 VAL 93 93 93 VAL VAL B . n B 1 94 ARG 94 94 94 ARG ARG B . n B 1 95 PHE 95 95 95 PHE PHE B . n B 1 96 GLN 96 96 96 GLN GLN B . n B 1 97 LEU 97 97 97 LEU LEU B . n B 1 98 ALA 98 98 98 ALA ALA B . n B 1 99 ASP 99 99 99 ASP ASP B . n B 1 100 PRO 100 100 100 PRO PRO B . n B 1 101 ASP 101 101 101 ASP ASP B . n B 1 102 ALA 102 102 102 ALA ALA B . n B 1 103 HIS 103 103 103 HIS HIS B . n B 1 104 TYR 104 104 104 TYR TYR B . n B 1 105 HIS 105 105 105 HIS HIS B . n B 1 106 ILE 106 106 106 ILE ILE B . n B 1 107 PRO 107 107 107 PRO PRO B . n B 1 108 LEU 108 108 108 LEU LEU B . n B 1 109 LEU 109 109 109 LEU LEU B . n B 1 110 LEU 110 110 110 LEU LEU B . n B 1 111 SER 111 111 111 SER SER B . n B 1 112 PRO 112 112 112 PRO PRO B . n B 1 113 PHE 113 113 113 PHE PHE B . n B 1 114 GLY 114 114 114 GLY GLY B . n B 1 115 TYR 115 115 115 TYR TYR B . n B 1 116 GLN 116 116 116 GLN GLN B . n B 1 117 VAL 117 117 117 VAL VAL B . n B 1 118 TYR 118 118 118 TYR TYR B . n B 1 119 ARG 119 119 119 ARG ARG B . n B 1 120 GLY 120 120 120 GLY GLY B . n B 1 121 SER 121 121 121 SER SER B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 URN 1 122 1 URN DAU A . D 3 HOH 1 301 301 HOH HOH A . D 3 HOH 2 305 305 HOH HOH A . D 3 HOH 3 308 308 HOH HOH A . D 3 HOH 4 309 309 HOH HOH A . D 3 HOH 5 310 310 HOH HOH A . D 3 HOH 6 311 311 HOH HOH A . D 3 HOH 7 314 314 HOH HOH A . D 3 HOH 8 317 317 HOH HOH A . D 3 HOH 9 318 318 HOH HOH A . D 3 HOH 10 319 319 HOH HOH A . D 3 HOH 11 321 321 HOH HOH A . D 3 HOH 12 322 322 HOH HOH A . D 3 HOH 13 324 324 HOH HOH A . D 3 HOH 14 327 327 HOH HOH A . D 3 HOH 15 330 330 HOH HOH A . D 3 HOH 16 332 332 HOH HOH A . D 3 HOH 17 333 333 HOH HOH A . D 3 HOH 18 334 334 HOH HOH A . D 3 HOH 19 339 339 HOH HOH A . D 3 HOH 20 340 340 HOH HOH A . D 3 HOH 21 342 342 HOH HOH A . D 3 HOH 22 343 343 HOH HOH A . D 3 HOH 23 344 344 HOH HOH A . D 3 HOH 24 345 345 HOH HOH A . D 3 HOH 25 348 348 HOH HOH A . D 3 HOH 26 349 349 HOH HOH A . D 3 HOH 27 350 350 HOH HOH A . D 3 HOH 28 352 352 HOH HOH A . D 3 HOH 29 354 354 HOH HOH A . E 3 HOH 1 300 300 HOH HOH B . E 3 HOH 2 302 302 HOH HOH B . E 3 HOH 3 303 303 HOH HOH B . E 3 HOH 4 304 304 HOH HOH B . E 3 HOH 5 306 306 HOH HOH B . E 3 HOH 6 307 307 HOH HOH B . E 3 HOH 7 312 312 HOH HOH B . E 3 HOH 8 313 313 HOH HOH B . E 3 HOH 9 315 315 HOH HOH B . E 3 HOH 10 316 316 HOH HOH B . E 3 HOH 11 320 320 HOH HOH B . E 3 HOH 12 323 323 HOH HOH B . E 3 HOH 13 325 325 HOH HOH B . E 3 HOH 14 326 326 HOH HOH B . E 3 HOH 15 328 328 HOH HOH B . E 3 HOH 16 329 329 HOH HOH B . E 3 HOH 17 331 331 HOH HOH B . E 3 HOH 18 335 335 HOH HOH B . E 3 HOH 19 336 336 HOH HOH B . E 3 HOH 20 337 337 HOH HOH B . E 3 HOH 21 338 338 HOH HOH B . E 3 HOH 22 341 341 HOH HOH B . E 3 HOH 23 346 346 HOH HOH B . E 3 HOH 24 347 347 HOH HOH B . E 3 HOH 25 351 351 HOH HOH B . E 3 HOH 26 353 353 HOH HOH B . E 3 HOH 27 355 355 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 8 A MSE 8 ? MET SELENOMETHIONINE 2 A MSE 39 A MSE 39 ? MET SELENOMETHIONINE 3 A MSE 61 A MSE 61 ? MET SELENOMETHIONINE 4 A MSE 67 A MSE 67 ? MET SELENOMETHIONINE 5 B MSE 8 B MSE 8 ? MET SELENOMETHIONINE 6 B MSE 39 B MSE 39 ? MET SELENOMETHIONINE 7 B MSE 61 B MSE 61 ? MET SELENOMETHIONINE 8 B MSE 67 B MSE 67 ? MET SELENOMETHIONINE 9 B MSE 80 B MSE 80 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? tetrameric 4 2 author_defined_assembly ? tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3,4 A,C,D 2 1,5,6,7 B,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_575 -x,-y+2,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 145.9120000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 7_465 y-1,x+1,-z+1/2 0.0000000000 1.0000000000 0.0000000000 -72.9560000000 1.0000000000 0.0000000000 0.0000000000 72.9560000000 0.0000000000 0.0000000000 -1.0000000000 72.5635000000 4 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 72.9560000000 -1.0000000000 0.0000000000 0.0000000000 72.9560000000 0.0000000000 0.0000000000 -1.0000000000 72.5635000000 5 'crystal symmetry operation' 2_565 -x,-y+1,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 72.9560000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 6 'crystal symmetry operation' 5_556 -x,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 145.1270000000 7 'crystal symmetry operation' 6_566 x,-y+1,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 72.9560000000 0.0000000000 0.0000000000 -1.0000000000 145.1270000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 317 ? D HOH . 2 1 B HOH 302 ? E HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-06-27 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.contact_author' 3 4 'Structure model' '_software.contact_author_email' 4 4 'Structure model' '_software.date' 5 4 'Structure model' '_software.language' 6 4 'Structure model' '_software.location' 7 4 'Structure model' '_software.name' 8 4 'Structure model' '_software.type' 9 4 'Structure model' '_software.version' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 3 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 CNS . ? ? ? ? phasing ? ? ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 14 ? ? 177.70 132.44 2 1 LEU A 18 ? ? -67.68 2.25 3 1 ILE A 38 ? ? -35.66 137.58 4 1 PRO A 53 ? ? -42.04 154.94 5 1 SER A 62 ? ? -39.82 138.75 6 1 GLN A 85 ? ? -159.10 68.31 7 1 THR A 89 ? ? -103.30 -77.63 8 1 HIS B 14 ? ? -165.63 119.11 9 1 LEU B 34 ? ? -39.64 131.10 10 1 GLU B 36 ? ? -49.55 169.56 11 1 ILE B 38 ? ? -39.31 119.50 12 1 ARG B 49 ? ? -126.35 -169.36 13 1 PRO B 53 ? ? -42.36 151.72 14 1 ALA B 82 ? ? 56.26 -2.21 15 1 GLN B 85 ? ? -117.41 69.69 16 1 PHE B 87 ? ? -38.79 -31.09 17 1 THR B 89 ? ? -142.28 -81.89 18 1 ALA B 98 ? ? -71.75 -77.08 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A GLU 3 ? A GLU 3 4 1 Y 1 A PRO 4 ? A PRO 4 5 1 Y 1 A GLU 5 ? A GLU 5 6 1 Y 1 A SER 6 ? A SER 6 7 1 Y 1 A LEU 7 ? A LEU 7 8 1 Y 1 A MSE 80 ? A MSE 80 9 1 Y 1 A ASN 81 ? A ASN 81 10 1 Y 1 B MSE 1 ? B MSE 1 11 1 Y 1 B SER 2 ? B SER 2 12 1 Y 1 B GLU 3 ? B GLU 3 13 1 Y 1 B PRO 4 ? B PRO 4 14 1 Y 1 B GLU 5 ? B GLU 5 15 1 Y 1 B SER 6 ? B SER 6 16 1 Y 1 B LEU 7 ? B LEU 7 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '5,6-DIAMINOPYRIMIDINE-2,4(1H,3H)-DIONE' URN 3 water HOH #