HEADER HYDROLASE 17-MAY-06 2H1X TITLE CRYSTAL STRUCTURE OF 5-HYDROXYISOURATE HYDROLASE (FORMERLY KNOWN AS TITLE 2 TRP, TRANSTHYRETIN RELATED PROTEIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5-HYDROXYISOURATE HYDROLASE (FORMERLY KNOWN AS TRP, COMPND 3 TRANSTHYRETIN RELATED PROTEIN); COMPND 4 CHAIN: A, B, C, D; COMPND 5 EC: 3.5.2.17; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: GENEID:558664; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS 5-HYDROXYISOURATE HYDROLASE, TRP, URIC ACID DEGRADATION, ALLANTOIN, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.ZANOTTI,L.CENDRON,C.FOLLI,I.RAMAZZINA,R.PERCUDANI,R.BERNI REVDAT 4 30-AUG-23 2H1X 1 REMARK REVDAT 3 20-OCT-21 2H1X 1 SEQADV REVDAT 2 24-FEB-09 2H1X 1 VERSN REVDAT 1 31-OCT-06 2H1X 0 JRNL AUTH G.ZANOTTI,L.CENDRON,I.RAMAZZINA,C.FOLLI,R.PERCUDANI,R.BERNI JRNL TITL STRUCTURE OF ZEBRA FISH HIUASE: INSIGHTS INTO EVOLUTION OF JRNL TITL 2 AN ENZYME TO A HORMONE TRANSPORTER. JRNL REF J.MOL.BIOL. V. 363 1 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16952372 JRNL DOI 10.1016/J.JMB.2006.07.079 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.RAMAZZINA,C.FOLLI,A.SECCHI,R.BERNI,R.PERCUDANI REMARK 1 TITL COMPLETING THE URIC ACID DEGRADATION PATHWAY THROUGH REMARK 1 TITL 2 PHYLOGENETIC COMPARISON OF WHOLE GENOMES REMARK 1 REF NAT.CHEM.BIOL. V. 2 144 2006 REMARK 1 REFN ISSN 1552-4450 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 3 NUMBER OF REFLECTIONS : 25579 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1367 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1644 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.1840 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3572 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 121 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.45000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : 0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.61000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.252 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.200 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.350 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3672 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5016 ; 1.159 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 448 ; 5.603 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;35.694 ;22.821 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 560 ;14.150 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;27.602 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 568 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2800 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1563 ; 0.234 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2516 ; 0.327 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 343 ; 0.218 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 57 ; 0.301 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.260 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2320 ; 2.218 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3668 ; 3.126 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1584 ; 2.349 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1348 ; 3.322 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 7 A 119 5 REMARK 3 1 B 7 B 119 5 REMARK 3 1 C 7 C 119 5 REMARK 3 1 D 7 D 119 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 452 ; 0.22 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 452 ; 0.19 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 452 ; 0.19 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 D (A): 452 ; 0.23 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 441 ; 0.36 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 441 ; 0.37 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 C (A): 441 ; 0.41 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 D (A): 441 ; 0.42 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 452 ; 0.90 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 452 ; 0.93 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 452 ; 0.91 ; 2.00 REMARK 3 MEDIUM THERMAL 1 D (A**2): 452 ; 0.84 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 441 ; 2.07 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 441 ; 1.87 ; 10.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 441 ; 2.01 ; 10.00 REMARK 3 LOOSE THERMAL 1 D (A**2): 441 ; 1.91 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2H1X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037826. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : MOSFLM REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26947 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 500.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.1 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.19000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1F41 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 20% PEG 10000, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.06750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE HOMO-TETRAMER PRESENT IN THE ASYMMETRIC UNIT COINCIDES REMARK 300 WITH THE BIOLOGICAL ASSEMBLY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 LEU A 5 REMARK 465 LEU A 6 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 THR B 4 REMARK 465 LEU B 5 REMARK 465 LEU B 6 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 ALA C 3 REMARK 465 THR C 4 REMARK 465 LEU C 5 REMARK 465 LEU C 6 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 ALA D 3 REMARK 465 THR D 4 REMARK 465 LEU D 5 REMARK 465 LEU D 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG D 117 O HOH D 141 1.92 REMARK 500 NH2 ARG A 117 O HOH A 134 2.01 REMARK 500 O SER C 7 O HOH C 124 2.10 REMARK 500 NH2 ARG C 31 O ASN C 61 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP B 49 NE2 GLN B 100 2656 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 109 -168.45 -119.75 REMARK 500 HIS B 12 116.12 -164.42 REMARK 500 VAL B 35 -82.23 102.03 REMARK 500 SER B 37 40.52 -83.51 REMARK 500 VAL C 35 -73.23 84.79 REMARK 500 VAL D 35 -53.19 -121.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F41 RELATED DB: PDB REMARK 900 TRANSTHYRETIN (HUMAN) DBREF 2H1X A 1 119 UNP Q0P422 Q0P422_BRARE 1 95 DBREF 2H1X B 1 119 UNP Q0P422 Q0P422_BRARE 1 95 DBREF 2H1X C 1 119 UNP Q0P422 Q0P422_BRARE 1 95 DBREF 2H1X D 1 119 UNP Q0P422 Q0P422_BRARE 1 95 SEQADV 2H1X ALA A 2 UNP Q0P422 SER 21 ENGINEERED MUTATION SEQADV 2H1X LEU A 6 UNP Q0P422 PRO 25 VARIANT SEQADV 2H1X ALA B 2 UNP Q0P422 SER 21 ENGINEERED MUTATION SEQADV 2H1X LEU B 6 UNP Q0P422 PRO 25 VARIANT SEQADV 2H1X ALA C 2 UNP Q0P422 SER 21 ENGINEERED MUTATION SEQADV 2H1X LEU C 6 UNP Q0P422 PRO 25 VARIANT SEQADV 2H1X ALA D 2 UNP Q0P422 SER 21 ENGINEERED MUTATION SEQADV 2H1X LEU D 6 UNP Q0P422 PRO 25 VARIANT SEQRES 1 A 119 MET ALA ALA THR LEU LEU SER PRO LEU SER THR HIS VAL SEQRES 2 A 119 LEU ASN ILE ALA GLN GLY VAL PRO GLY ALA ASN MET THR SEQRES 3 A 119 ILE VAL LEU HIS ARG LEU ASP PRO VAL SER SER ALA TRP SEQRES 4 A 119 ASN ILE LEU THR THR GLY ILE THR ASN ASP ASP GLY ARG SEQRES 5 A 119 CYS PRO GLY LEU ILE THR LYS GLU ASN PHE ILE ALA GLY SEQRES 6 A 119 VAL TYR LYS MET ARG PHE GLU THR GLY LYS TYR TRP ASP SEQRES 7 A 119 ALA LEU GLY GLU THR CYS PHE TYR PRO TYR VAL GLU ILE SEQRES 8 A 119 VAL PHE THR ILE THR ASN THR SER GLN HIS TYR HIS VAL SEQRES 9 A 119 PRO LEU LEU LEU SER ARG PHE SER TYR SER THR TYR ARG SEQRES 10 A 119 GLY SER SEQRES 1 B 119 MET ALA ALA THR LEU LEU SER PRO LEU SER THR HIS VAL SEQRES 2 B 119 LEU ASN ILE ALA GLN GLY VAL PRO GLY ALA ASN MET THR SEQRES 3 B 119 ILE VAL LEU HIS ARG LEU ASP PRO VAL SER SER ALA TRP SEQRES 4 B 119 ASN ILE LEU THR THR GLY ILE THR ASN ASP ASP GLY ARG SEQRES 5 B 119 CYS PRO GLY LEU ILE THR LYS GLU ASN PHE ILE ALA GLY SEQRES 6 B 119 VAL TYR LYS MET ARG PHE GLU THR GLY LYS TYR TRP ASP SEQRES 7 B 119 ALA LEU GLY GLU THR CYS PHE TYR PRO TYR VAL GLU ILE SEQRES 8 B 119 VAL PHE THR ILE THR ASN THR SER GLN HIS TYR HIS VAL SEQRES 9 B 119 PRO LEU LEU LEU SER ARG PHE SER TYR SER THR TYR ARG SEQRES 10 B 119 GLY SER SEQRES 1 C 119 MET ALA ALA THR LEU LEU SER PRO LEU SER THR HIS VAL SEQRES 2 C 119 LEU ASN ILE ALA GLN GLY VAL PRO GLY ALA ASN MET THR SEQRES 3 C 119 ILE VAL LEU HIS ARG LEU ASP PRO VAL SER SER ALA TRP SEQRES 4 C 119 ASN ILE LEU THR THR GLY ILE THR ASN ASP ASP GLY ARG SEQRES 5 C 119 CYS PRO GLY LEU ILE THR LYS GLU ASN PHE ILE ALA GLY SEQRES 6 C 119 VAL TYR LYS MET ARG PHE GLU THR GLY LYS TYR TRP ASP SEQRES 7 C 119 ALA LEU GLY GLU THR CYS PHE TYR PRO TYR VAL GLU ILE SEQRES 8 C 119 VAL PHE THR ILE THR ASN THR SER GLN HIS TYR HIS VAL SEQRES 9 C 119 PRO LEU LEU LEU SER ARG PHE SER TYR SER THR TYR ARG SEQRES 10 C 119 GLY SER SEQRES 1 D 119 MET ALA ALA THR LEU LEU SER PRO LEU SER THR HIS VAL SEQRES 2 D 119 LEU ASN ILE ALA GLN GLY VAL PRO GLY ALA ASN MET THR SEQRES 3 D 119 ILE VAL LEU HIS ARG LEU ASP PRO VAL SER SER ALA TRP SEQRES 4 D 119 ASN ILE LEU THR THR GLY ILE THR ASN ASP ASP GLY ARG SEQRES 5 D 119 CYS PRO GLY LEU ILE THR LYS GLU ASN PHE ILE ALA GLY SEQRES 6 D 119 VAL TYR LYS MET ARG PHE GLU THR GLY LYS TYR TRP ASP SEQRES 7 D 119 ALA LEU GLY GLU THR CYS PHE TYR PRO TYR VAL GLU ILE SEQRES 8 D 119 VAL PHE THR ILE THR ASN THR SER GLN HIS TYR HIS VAL SEQRES 9 D 119 PRO LEU LEU LEU SER ARG PHE SER TYR SER THR TYR ARG SEQRES 10 D 119 GLY SER FORMUL 5 HOH *121(H2 O) HELIX 1 1 GLU A 72 ALA A 79 1 8 HELIX 2 2 THR B 58 PHE B 62 5 5 HELIX 3 3 GLU B 72 ALA B 79 1 8 HELIX 4 4 THR C 58 PHE C 62 5 5 HELIX 5 5 GLU C 72 LEU C 80 1 9 HELIX 6 6 GLU D 72 ALA D 79 1 8 SHEET 1 A 2 LEU A 9 SER A 10 0 SHEET 2 A 2 TYR A 102 HIS A 103 1 O TYR A 102 N SER A 10 SHEET 1 B 8 VAL A 20 PRO A 21 0 SHEET 2 B 8 VAL A 13 ASN A 15 -1 N ASN A 15 O VAL A 20 SHEET 3 B 8 LEU A 106 LEU A 108 1 O LEU A 108 N LEU A 14 SHEET 4 B 8 SER A 112 TYR A 116 -1 O SER A 114 N LEU A 107 SHEET 5 B 8 SER B 112 TYR B 116 -1 O TYR B 113 N THR A 115 SHEET 6 B 8 LEU B 106 SER B 109 -1 N LEU B 107 O SER B 114 SHEET 7 B 8 VAL B 13 ASN B 15 1 N LEU B 14 O LEU B 108 SHEET 8 B 8 VAL B 20 PRO B 21 -1 O VAL B 20 N ASN B 15 SHEET 1 C 4 TRP A 39 ILE A 46 0 SHEET 2 C 4 THR A 26 LEU A 32 -1 N ILE A 27 O GLY A 45 SHEET 3 C 4 GLY A 65 PHE A 71 -1 O VAL A 66 N LEU A 32 SHEET 4 C 4 VAL A 89 ILE A 95 -1 O VAL A 89 N PHE A 71 SHEET 1 D 2 LEU B 9 SER B 10 0 SHEET 2 D 2 TYR B 102 HIS B 103 1 O TYR B 102 N SER B 10 SHEET 1 E 4 TRP B 39 ILE B 46 0 SHEET 2 E 4 THR B 26 LEU B 32 -1 N LEU B 29 O LEU B 42 SHEET 3 E 4 GLY B 65 PHE B 71 -1 O LYS B 68 N HIS B 30 SHEET 4 E 4 VAL B 89 ILE B 95 -1 O VAL B 89 N PHE B 71 SHEET 1 F 2 LEU C 9 SER C 10 0 SHEET 2 F 2 TYR C 102 HIS C 103 1 O TYR C 102 N SER C 10 SHEET 1 G 8 VAL C 20 PRO C 21 0 SHEET 2 G 8 VAL C 13 ASN C 15 -1 N ASN C 15 O VAL C 20 SHEET 3 G 8 LEU C 106 LEU C 108 1 O LEU C 108 N LEU C 14 SHEET 4 G 8 SER C 112 TYR C 116 -1 O SER C 114 N LEU C 107 SHEET 5 G 8 SER D 112 TYR D 116 -1 O THR D 115 N TYR C 113 SHEET 6 G 8 LEU D 106 SER D 109 -1 N LEU D 107 O SER D 114 SHEET 7 G 8 VAL D 13 ASN D 15 1 N LEU D 14 O LEU D 108 SHEET 8 G 8 VAL D 20 PRO D 21 -1 O VAL D 20 N ASN D 15 SHEET 1 H 4 TRP C 39 ILE C 46 0 SHEET 2 H 4 THR C 26 LEU C 32 -1 N ILE C 27 O GLY C 45 SHEET 3 H 4 GLY C 65 PHE C 71 -1 O LYS C 68 N HIS C 30 SHEET 4 H 4 VAL C 89 ILE C 95 -1 O VAL C 89 N PHE C 71 SHEET 1 I 2 LEU D 9 SER D 10 0 SHEET 2 I 2 TYR D 102 HIS D 103 1 O TYR D 102 N SER D 10 SHEET 1 J 4 TRP D 39 ILE D 46 0 SHEET 2 J 4 THR D 26 LEU D 32 -1 N LEU D 29 O THR D 43 SHEET 3 J 4 GLY D 65 PHE D 71 -1 O VAL D 66 N LEU D 32 SHEET 4 J 4 VAL D 89 ILE D 95 -1 O VAL D 89 N PHE D 71 CISPEP 1 SER A 7 PRO A 8 0 -6.23 CISPEP 2 SER B 7 PRO B 8 0 -12.41 CISPEP 3 SER C 7 PRO C 8 0 -13.59 CISPEP 4 SER D 7 PRO D 8 0 -9.74 CRYST1 58.078 64.135 58.937 90.00 94.00 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017218 0.000000 0.001204 0.00000 SCALE2 0.000000 0.015592 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017009 0.00000