HEADER TRANSFERASE 17-MAY-06 2H21 TITLE STRUCTURE OF RUBISCO LSMT BOUND TO ADOMET COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBULOSE-1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RUBISCO LSMT (RESIDUES 49-482); COMPND 5 SYNONYM: [RIBULOSE- BISPHOSPHATE CARBOXYLASE]-LYSINE N- COMPND 6 METHYLTRANSFERASE, RUBISCO METHYLTRANSFERASE, RUBISCO LSMT, RBCMT; COMPND 7 EC: 2.1.1.127; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PISUM SATIVUM; SOURCE 3 ORGANISM_COMMON: PEA; SOURCE 4 ORGANISM_TAXID: 3888; SOURCE 5 GENE: RBCMT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST14 KEYWDS SET DOMAIN, PROTEIN LYSINE METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.F.COUTURE,G.HAUK,R.C.TRIEVEL REVDAT 6 14-FEB-24 2H21 1 REMARK SEQADV REVDAT 5 18-OCT-17 2H21 1 REMARK REVDAT 4 13-JUL-11 2H21 1 VERSN REVDAT 3 24-FEB-09 2H21 1 VERSN REVDAT 2 25-JUL-06 2H21 1 JRNL REVDAT 1 30-MAY-06 2H21 0 JRNL AUTH J.F.COUTURE,G.HAUK,M.J.THOMPSON,G.M.BLACKBURN,R.C.TRIEVEL JRNL TITL CATALYTIC ROLES FOR CARBON-OXYGEN HYDROGEN BONDING IN SET JRNL TITL 2 DOMAIN LYSINE METHYLTRANSFERASES. JRNL REF J.BIOL.CHEM. V. 281 19280 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16682405 JRNL DOI 10.1074/JBC.M602257200 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 293217.480 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 94670 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4774 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.60 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 14658 REMARK 3 BIN R VALUE (WORKING SET) : 0.4040 REMARK 3 BIN FREE R VALUE : 0.4300 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 734 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10481 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 81 REMARK 3 SOLVENT ATOMS : 559 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -17.24000 REMARK 3 B22 (A**2) : 17.26000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM SIGMAA (A) : 0.64 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.49 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.70 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.790 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.380 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.400 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.800 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.880 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 51.88 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : SAM.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : SAM.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2H21 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037830. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 32-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.7085 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97807 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 13.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS TRIS PROPANE, PH 6.8, 0.87 REMARK 280 -1.17 M NAACETATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 65.72500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.93000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 131.80500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 65.72500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.93000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 131.80500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 65.72500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.93000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 131.80500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 65.72500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 77.93000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 131.80500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THERE ARE THREE MOLECULES OF LSMT THE ASYMMETRIC UNIT. LSMT REMARK 300 IS A MONOMER IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 58550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 49 REMARK 465 ARG A 228 REMARK 465 ASN A 229 REMARK 465 GLU A 230 REMARK 465 LYS A 257 REMARK 465 GLY A 258 REMARK 465 ALA A 259 REMARK 465 ALA A 260 REMARK 465 GLY A 261 REMARK 465 LEU A 262 REMARK 465 PHE A 263 REMARK 465 SER A 264 REMARK 465 TRP A 265 REMARK 465 ASP A 266 REMARK 465 PHE A 487 REMARK 465 GLN A 488 REMARK 465 SER C 49 REMARK 465 GLN C 488 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 52 -70.86 -56.01 REMARK 500 PRO A 72 39.57 -83.29 REMARK 500 ASN A 93 8.15 57.58 REMARK 500 LYS A 101 -4.45 -54.01 REMARK 500 TRP A 104 -170.78 -61.73 REMARK 500 ILE A 105 69.66 -168.72 REMARK 500 ARG A 138 107.39 -45.21 REMARK 500 GLU A 139 34.19 -75.17 REMARK 500 ASP A 140 -10.37 -147.83 REMARK 500 SER A 141 160.27 -46.09 REMARK 500 TRP A 143 32.51 -88.98 REMARK 500 ILE A 195 -39.75 -144.60 REMARK 500 PRO A 198 -11.58 -47.86 REMARK 500 LYS A 200 -13.40 -48.02 REMARK 500 PRO A 204 -88.91 -56.86 REMARK 500 THR A 249 -60.09 -93.01 REMARK 500 GLU A 250 42.27 77.16 REMARK 500 HIS A 252 -49.98 -131.16 REMARK 500 TYR A 254 140.30 -178.20 REMARK 500 ASP A 288 112.54 176.86 REMARK 500 ASN A 306 99.85 -57.23 REMARK 500 LEU A 364 -88.64 -20.11 REMARK 500 ARG A 377 37.37 -63.17 REMARK 500 ASP A 378 -8.66 -153.30 REMARK 500 SER A 387 143.38 88.54 REMARK 500 TYR A 463 -175.48 -65.60 REMARK 500 LYS A 470 14.67 -66.94 REMARK 500 ASP A 471 56.99 -148.99 REMARK 500 GLU B 139 30.24 -79.79 REMARK 500 ILE B 195 -49.81 -133.49 REMARK 500 LYS B 200 -19.57 -48.38 REMARK 500 LEU B 227 149.59 -39.19 REMARK 500 ASN B 229 -1.67 69.68 REMARK 500 PRO B 236 -108.05 -32.34 REMARK 500 ASP B 239 5.26 -66.10 REMARK 500 TYR B 254 160.93 172.92 REMARK 500 LYS B 257 -152.02 -106.36 REMARK 500 ASP B 288 104.48 174.81 REMARK 500 ASN B 306 106.13 -59.74 REMARK 500 ASN B 348 -4.40 66.91 REMARK 500 LEU B 364 -89.71 -22.18 REMARK 500 ARG B 377 22.73 -61.94 REMARK 500 ASP B 378 -4.33 -140.97 REMARK 500 SER B 387 145.99 103.46 REMARK 500 VAL B 388 -66.23 -94.38 REMARK 500 ASN C 93 -1.61 77.28 REMARK 500 TRP C 104 -178.00 -67.20 REMARK 500 ILE C 105 88.65 -157.42 REMARK 500 ARG C 138 109.39 -57.65 REMARK 500 GLU C 139 32.06 -76.66 REMARK 500 REMARK 500 THIS ENTRY HAS 75 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM C 803 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MLV RELATED DB: PDB REMARK 900 THE SAME ENZYME IN COMPLEX WITH ADOHCY AND HEPES. REMARK 900 RELATED ID: 1OZV RELATED DB: PDB REMARK 900 THE SAME ENZYME IN COMPLEX WITH ADOHCY AND LYSINE. REMARK 900 RELATED ID: 1P0Y RELATED DB: PDB REMARK 900 THE SAME ENZYME IN COMPLEX WITH ADOHCY AND MONOMETHYLLYSINE. REMARK 900 RELATED ID: 2H23 RELATED DB: PDB REMARK 900 RELATED ID: 2H2E RELATED DB: PDB REMARK 900 RELATED ID: 2H2J RELATED DB: PDB REMARK 999 REMARK 999 THE ENGINEERED CONSTRUCT POSSESSES AN ENLYFQ SEQUENCE ON ITS C- REMARK 999 TERMINUS DUE TO A TEV PROTEASE CLEAVAGE SITE. DBREF 2H21 A 49 482 UNP Q43088 RBCMT_PEA 49 482 DBREF 2H21 B 49 482 UNP Q43088 RBCMT_PEA 49 482 DBREF 2H21 C 49 482 UNP Q43088 RBCMT_PEA 49 482 SEQADV 2H21 GLU A 483 UNP Q43088 CLONING ARTIFACT SEQADV 2H21 ASN A 484 UNP Q43088 CLONING ARTIFACT SEQADV 2H21 LEU A 485 UNP Q43088 CLONING ARTIFACT SEQADV 2H21 TYR A 486 UNP Q43088 CLONING ARTIFACT SEQADV 2H21 PHE A 487 UNP Q43088 CLONING ARTIFACT SEQADV 2H21 GLN A 488 UNP Q43088 CLONING ARTIFACT SEQADV 2H21 GLU B 483 UNP Q43088 CLONING ARTIFACT SEQADV 2H21 ASN B 484 UNP Q43088 CLONING ARTIFACT SEQADV 2H21 LEU B 485 UNP Q43088 CLONING ARTIFACT SEQADV 2H21 TYR B 486 UNP Q43088 CLONING ARTIFACT SEQADV 2H21 PHE B 487 UNP Q43088 CLONING ARTIFACT SEQADV 2H21 GLN B 488 UNP Q43088 CLONING ARTIFACT SEQADV 2H21 GLU C 483 UNP Q43088 CLONING ARTIFACT SEQADV 2H21 ASN C 484 UNP Q43088 CLONING ARTIFACT SEQADV 2H21 LEU C 485 UNP Q43088 CLONING ARTIFACT SEQADV 2H21 TYR C 486 UNP Q43088 CLONING ARTIFACT SEQADV 2H21 PHE C 487 UNP Q43088 CLONING ARTIFACT SEQADV 2H21 GLN C 488 UNP Q43088 CLONING ARTIFACT SEQRES 1 A 440 SER LEU SER PRO ALA VAL GLN THR PHE TRP LYS TRP LEU SEQRES 2 A 440 GLN GLU GLU GLY VAL ILE THR ALA LYS THR PRO VAL LYS SEQRES 3 A 440 ALA SER VAL VAL THR GLU GLY LEU GLY LEU VAL ALA LEU SEQRES 4 A 440 LYS ASP ILE SER ARG ASN ASP VAL ILE LEU GLN VAL PRO SEQRES 5 A 440 LYS ARG LEU TRP ILE ASN PRO ASP ALA VAL ALA ALA SER SEQRES 6 A 440 GLU ILE GLY ARG VAL CYS SER GLU LEU LYS PRO TRP LEU SEQRES 7 A 440 SER VAL ILE LEU PHE LEU ILE ARG GLU ARG SER ARG GLU SEQRES 8 A 440 ASP SER VAL TRP LYS HIS TYR PHE GLY ILE LEU PRO GLN SEQRES 9 A 440 GLU THR ASP SER THR ILE TYR TRP SER GLU GLU GLU LEU SEQRES 10 A 440 GLN GLU LEU GLN GLY SER GLN LEU LEU LYS THR THR VAL SEQRES 11 A 440 SER VAL LYS GLU TYR VAL LYS ASN GLU CYS LEU LYS LEU SEQRES 12 A 440 GLU GLN GLU ILE ILE LEU PRO ASN LYS ARG LEU PHE PRO SEQRES 13 A 440 ASP PRO VAL THR LEU ASP ASP PHE PHE TRP ALA PHE GLY SEQRES 14 A 440 ILE LEU ARG SER ARG ALA PHE SER ARG LEU ARG ASN GLU SEQRES 15 A 440 ASN LEU VAL VAL VAL PRO MET ALA ASP LEU ILE ASN HIS SEQRES 16 A 440 SER ALA GLY VAL THR THR GLU ASP HIS ALA TYR GLU VAL SEQRES 17 A 440 LYS GLY ALA ALA GLY LEU PHE SER TRP ASP TYR LEU PHE SEQRES 18 A 440 SER LEU LYS SER PRO LEU SER VAL LYS ALA GLY GLU GLN SEQRES 19 A 440 VAL TYR ILE GLN TYR ASP LEU ASN LYS SER ASN ALA GLU SEQRES 20 A 440 LEU ALA LEU ASP TYR GLY PHE ILE GLU PRO ASN GLU ASN SEQRES 21 A 440 ARG HIS ALA TYR THR LEU THR LEU GLU ILE SER GLU SER SEQRES 22 A 440 ASP PRO PHE PHE ASP ASP LYS LEU ASP VAL ALA GLU SER SEQRES 23 A 440 ASN GLY PHE ALA GLN THR ALA TYR PHE ASP ILE PHE TYR SEQRES 24 A 440 ASN ARG THR LEU PRO PRO GLY LEU LEU PRO TYR LEU ARG SEQRES 25 A 440 LEU VAL ALA LEU GLY GLY THR ASP ALA PHE LEU LEU GLU SEQRES 26 A 440 SER LEU PHE ARG ASP THR ILE TRP GLY HIS LEU GLU LEU SEQRES 27 A 440 SER VAL SER ARG ASP ASN GLU GLU LEU LEU CYS LYS ALA SEQRES 28 A 440 VAL ARG GLU ALA CYS LYS SER ALA LEU ALA GLY TYR HIS SEQRES 29 A 440 THR THR ILE GLU GLN ASP ARG GLU LEU LYS GLU GLY ASN SEQRES 30 A 440 LEU ASP SER ARG LEU ALA ILE ALA VAL GLY ILE ARG GLU SEQRES 31 A 440 GLY GLU LYS MET VAL LEU GLN GLN ILE ASP GLY ILE PHE SEQRES 32 A 440 GLU GLN LYS GLU LEU GLU LEU ASP GLN LEU GLU TYR TYR SEQRES 33 A 440 GLN GLU ARG ARG LEU LYS ASP LEU GLY LEU CYS GLY GLU SEQRES 34 A 440 ASN GLY ASP ILE LEU GLU ASN LEU TYR PHE GLN SEQRES 1 B 440 SER LEU SER PRO ALA VAL GLN THR PHE TRP LYS TRP LEU SEQRES 2 B 440 GLN GLU GLU GLY VAL ILE THR ALA LYS THR PRO VAL LYS SEQRES 3 B 440 ALA SER VAL VAL THR GLU GLY LEU GLY LEU VAL ALA LEU SEQRES 4 B 440 LYS ASP ILE SER ARG ASN ASP VAL ILE LEU GLN VAL PRO SEQRES 5 B 440 LYS ARG LEU TRP ILE ASN PRO ASP ALA VAL ALA ALA SER SEQRES 6 B 440 GLU ILE GLY ARG VAL CYS SER GLU LEU LYS PRO TRP LEU SEQRES 7 B 440 SER VAL ILE LEU PHE LEU ILE ARG GLU ARG SER ARG GLU SEQRES 8 B 440 ASP SER VAL TRP LYS HIS TYR PHE GLY ILE LEU PRO GLN SEQRES 9 B 440 GLU THR ASP SER THR ILE TYR TRP SER GLU GLU GLU LEU SEQRES 10 B 440 GLN GLU LEU GLN GLY SER GLN LEU LEU LYS THR THR VAL SEQRES 11 B 440 SER VAL LYS GLU TYR VAL LYS ASN GLU CYS LEU LYS LEU SEQRES 12 B 440 GLU GLN GLU ILE ILE LEU PRO ASN LYS ARG LEU PHE PRO SEQRES 13 B 440 ASP PRO VAL THR LEU ASP ASP PHE PHE TRP ALA PHE GLY SEQRES 14 B 440 ILE LEU ARG SER ARG ALA PHE SER ARG LEU ARG ASN GLU SEQRES 15 B 440 ASN LEU VAL VAL VAL PRO MET ALA ASP LEU ILE ASN HIS SEQRES 16 B 440 SER ALA GLY VAL THR THR GLU ASP HIS ALA TYR GLU VAL SEQRES 17 B 440 LYS GLY ALA ALA GLY LEU PHE SER TRP ASP TYR LEU PHE SEQRES 18 B 440 SER LEU LYS SER PRO LEU SER VAL LYS ALA GLY GLU GLN SEQRES 19 B 440 VAL TYR ILE GLN TYR ASP LEU ASN LYS SER ASN ALA GLU SEQRES 20 B 440 LEU ALA LEU ASP TYR GLY PHE ILE GLU PRO ASN GLU ASN SEQRES 21 B 440 ARG HIS ALA TYR THR LEU THR LEU GLU ILE SER GLU SER SEQRES 22 B 440 ASP PRO PHE PHE ASP ASP LYS LEU ASP VAL ALA GLU SER SEQRES 23 B 440 ASN GLY PHE ALA GLN THR ALA TYR PHE ASP ILE PHE TYR SEQRES 24 B 440 ASN ARG THR LEU PRO PRO GLY LEU LEU PRO TYR LEU ARG SEQRES 25 B 440 LEU VAL ALA LEU GLY GLY THR ASP ALA PHE LEU LEU GLU SEQRES 26 B 440 SER LEU PHE ARG ASP THR ILE TRP GLY HIS LEU GLU LEU SEQRES 27 B 440 SER VAL SER ARG ASP ASN GLU GLU LEU LEU CYS LYS ALA SEQRES 28 B 440 VAL ARG GLU ALA CYS LYS SER ALA LEU ALA GLY TYR HIS SEQRES 29 B 440 THR THR ILE GLU GLN ASP ARG GLU LEU LYS GLU GLY ASN SEQRES 30 B 440 LEU ASP SER ARG LEU ALA ILE ALA VAL GLY ILE ARG GLU SEQRES 31 B 440 GLY GLU LYS MET VAL LEU GLN GLN ILE ASP GLY ILE PHE SEQRES 32 B 440 GLU GLN LYS GLU LEU GLU LEU ASP GLN LEU GLU TYR TYR SEQRES 33 B 440 GLN GLU ARG ARG LEU LYS ASP LEU GLY LEU CYS GLY GLU SEQRES 34 B 440 ASN GLY ASP ILE LEU GLU ASN LEU TYR PHE GLN SEQRES 1 C 440 SER LEU SER PRO ALA VAL GLN THR PHE TRP LYS TRP LEU SEQRES 2 C 440 GLN GLU GLU GLY VAL ILE THR ALA LYS THR PRO VAL LYS SEQRES 3 C 440 ALA SER VAL VAL THR GLU GLY LEU GLY LEU VAL ALA LEU SEQRES 4 C 440 LYS ASP ILE SER ARG ASN ASP VAL ILE LEU GLN VAL PRO SEQRES 5 C 440 LYS ARG LEU TRP ILE ASN PRO ASP ALA VAL ALA ALA SER SEQRES 6 C 440 GLU ILE GLY ARG VAL CYS SER GLU LEU LYS PRO TRP LEU SEQRES 7 C 440 SER VAL ILE LEU PHE LEU ILE ARG GLU ARG SER ARG GLU SEQRES 8 C 440 ASP SER VAL TRP LYS HIS TYR PHE GLY ILE LEU PRO GLN SEQRES 9 C 440 GLU THR ASP SER THR ILE TYR TRP SER GLU GLU GLU LEU SEQRES 10 C 440 GLN GLU LEU GLN GLY SER GLN LEU LEU LYS THR THR VAL SEQRES 11 C 440 SER VAL LYS GLU TYR VAL LYS ASN GLU CYS LEU LYS LEU SEQRES 12 C 440 GLU GLN GLU ILE ILE LEU PRO ASN LYS ARG LEU PHE PRO SEQRES 13 C 440 ASP PRO VAL THR LEU ASP ASP PHE PHE TRP ALA PHE GLY SEQRES 14 C 440 ILE LEU ARG SER ARG ALA PHE SER ARG LEU ARG ASN GLU SEQRES 15 C 440 ASN LEU VAL VAL VAL PRO MET ALA ASP LEU ILE ASN HIS SEQRES 16 C 440 SER ALA GLY VAL THR THR GLU ASP HIS ALA TYR GLU VAL SEQRES 17 C 440 LYS GLY ALA ALA GLY LEU PHE SER TRP ASP TYR LEU PHE SEQRES 18 C 440 SER LEU LYS SER PRO LEU SER VAL LYS ALA GLY GLU GLN SEQRES 19 C 440 VAL TYR ILE GLN TYR ASP LEU ASN LYS SER ASN ALA GLU SEQRES 20 C 440 LEU ALA LEU ASP TYR GLY PHE ILE GLU PRO ASN GLU ASN SEQRES 21 C 440 ARG HIS ALA TYR THR LEU THR LEU GLU ILE SER GLU SER SEQRES 22 C 440 ASP PRO PHE PHE ASP ASP LYS LEU ASP VAL ALA GLU SER SEQRES 23 C 440 ASN GLY PHE ALA GLN THR ALA TYR PHE ASP ILE PHE TYR SEQRES 24 C 440 ASN ARG THR LEU PRO PRO GLY LEU LEU PRO TYR LEU ARG SEQRES 25 C 440 LEU VAL ALA LEU GLY GLY THR ASP ALA PHE LEU LEU GLU SEQRES 26 C 440 SER LEU PHE ARG ASP THR ILE TRP GLY HIS LEU GLU LEU SEQRES 27 C 440 SER VAL SER ARG ASP ASN GLU GLU LEU LEU CYS LYS ALA SEQRES 28 C 440 VAL ARG GLU ALA CYS LYS SER ALA LEU ALA GLY TYR HIS SEQRES 29 C 440 THR THR ILE GLU GLN ASP ARG GLU LEU LYS GLU GLY ASN SEQRES 30 C 440 LEU ASP SER ARG LEU ALA ILE ALA VAL GLY ILE ARG GLU SEQRES 31 C 440 GLY GLU LYS MET VAL LEU GLN GLN ILE ASP GLY ILE PHE SEQRES 32 C 440 GLU GLN LYS GLU LEU GLU LEU ASP GLN LEU GLU TYR TYR SEQRES 33 C 440 GLN GLU ARG ARG LEU LYS ASP LEU GLY LEU CYS GLY GLU SEQRES 34 C 440 ASN GLY ASP ILE LEU GLU ASN LEU TYR PHE GLN HET SAM A 801 27 HET SAM B 802 27 HET SAM C 803 27 HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 4 SAM 3(C15 H22 N6 O5 S) FORMUL 7 HOH *559(H2 O) HELIX 1 1 SER A 51 GLU A 64 1 14 HELIX 2 2 ARG A 102 TRP A 104 5 3 HELIX 3 3 ASN A 106 ALA A 111 1 6 HELIX 4 4 ILE A 115 SER A 120 1 6 HELIX 5 5 LYS A 123 ARG A 138 1 16 HELIX 6 6 TRP A 143 GLY A 148 1 6 HELIX 7 7 SER A 161 GLU A 167 1 7 HELIX 8 8 SER A 171 ILE A 195 1 25 HELIX 9 9 THR A 208 ALA A 223 1 16 HELIX 10 10 SER A 292 TYR A 300 1 9 HELIX 11 11 ASN A 306 ARG A 309 5 4 HELIX 12 12 PHE A 324 SER A 334 1 11 HELIX 13 13 GLY A 354 LEU A 364 1 11 HELIX 14 14 GLY A 365 ARG A 377 5 13 HELIX 15 15 THR A 379 SER A 387 1 9 HELIX 16 16 SER A 389 ALA A 409 1 21 HELIX 17 17 THR A 414 GLU A 423 1 10 HELIX 18 18 ASP A 427 GLU A 457 1 31 HELIX 19 19 TYR A 463 LYS A 470 1 8 HELIX 20 20 ASN A 478 ASN A 484 1 7 HELIX 21 21 SER B 49 GLU B 64 1 16 HELIX 22 22 ARG B 102 TRP B 104 5 3 HELIX 23 23 ASN B 106 ALA B 112 1 7 HELIX 24 24 ILE B 115 SER B 120 1 6 HELIX 25 25 LYS B 123 ARG B 138 1 16 HELIX 26 26 TRP B 143 GLY B 148 1 6 HELIX 27 27 SER B 156 TRP B 160 5 5 HELIX 28 28 SER B 161 GLU B 167 1 7 HELIX 29 29 SER B 171 ILE B 195 1 25 HELIX 30 30 ILE B 196 LYS B 200 5 5 HELIX 31 31 THR B 208 ALA B 223 1 16 HELIX 32 32 PRO B 236 ILE B 241 5 6 HELIX 33 33 LYS B 257 GLY B 261 5 5 HELIX 34 34 PHE B 263 ASP B 266 5 4 HELIX 35 35 SER B 292 TYR B 300 1 9 HELIX 36 36 ASN B 306 ARG B 309 5 4 HELIX 37 37 PHE B 324 ASN B 335 1 12 HELIX 38 38 GLY B 354 LEU B 364 1 11 HELIX 39 39 GLY B 366 ARG B 377 5 12 HELIX 40 40 THR B 379 SER B 387 1 9 HELIX 41 41 SER B 389 ALA B 409 1 21 HELIX 42 42 THR B 414 GLU B 423 1 10 HELIX 43 43 ASP B 427 GLU B 457 1 31 HELIX 44 44 TYR B 463 LEU B 469 1 7 HELIX 45 45 ASN B 478 PHE B 487 1 10 HELIX 46 46 SER C 51 GLU C 64 1 14 HELIX 47 47 ARG C 102 TRP C 104 5 3 HELIX 48 48 ASN C 106 ALA C 112 1 7 HELIX 49 49 ILE C 115 SER C 120 1 6 HELIX 50 50 LYS C 123 ARG C 138 1 16 HELIX 51 51 TRP C 143 GLY C 148 1 6 HELIX 52 52 SER C 156 TRP C 160 5 5 HELIX 53 53 SER C 161 GLU C 167 1 7 HELIX 54 54 SER C 171 ILE C 195 1 25 HELIX 55 55 THR C 208 ALA C 223 1 16 HELIX 56 56 MET C 237 ILE C 241 5 5 HELIX 57 57 PHE C 263 ASP C 266 5 4 HELIX 58 58 SER C 292 TYR C 300 1 9 HELIX 59 59 ASN C 306 ARG C 309 5 4 HELIX 60 60 PHE C 324 ASN C 335 1 12 HELIX 61 61 GLY C 354 LEU C 364 1 11 HELIX 62 62 GLY C 365 ARG C 377 5 13 HELIX 63 63 THR C 379 SER C 387 1 9 HELIX 64 64 SER C 389 ALA C 409 1 21 HELIX 65 65 THR C 414 GLU C 423 1 10 HELIX 66 66 ASP C 427 GLU C 457 1 31 HELIX 67 67 LEU C 458 GLN C 460 5 3 HELIX 68 68 TYR C 463 LEU C 469 1 7 HELIX 69 69 GLY C 479 LEU C 485 1 7 SHEET 1 A 2 VAL A 73 VAL A 78 0 SHEET 2 A 2 GLY A 81 ALA A 86 -1 O GLY A 81 N VAL A 78 SHEET 1 B 3 ASP A 94 PRO A 100 0 SHEET 2 B 3 LEU A 268 SER A 273 -1 O LEU A 271 N LEU A 97 SHEET 3 B 3 ALA A 253 GLU A 255 -1 N TYR A 254 O SER A 270 SHEET 1 C 2 ASN A 242 HIS A 243 0 SHEET 2 C 2 TYR A 284 ILE A 285 1 O ILE A 285 N ASN A 242 SHEET 1 D 2 ALA A 311 GLU A 317 0 SHEET 2 D 2 THR A 340 PHE A 346 -1 O PHE A 343 N LEU A 314 SHEET 1 E 2 VAL B 73 VAL B 78 0 SHEET 2 E 2 GLY B 81 ALA B 86 -1 O GLY B 81 N VAL B 78 SHEET 1 F 3 ASP B 94 PRO B 100 0 SHEET 2 F 3 LEU B 268 SER B 273 -1 O LEU B 271 N ILE B 96 SHEET 3 F 3 ALA B 253 VAL B 256 -1 N TYR B 254 O SER B 270 SHEET 1 G 2 ASN B 242 HIS B 243 0 SHEET 2 G 2 TYR B 284 ILE B 285 1 O ILE B 285 N ASN B 242 SHEET 1 H 2 ALA B 311 GLU B 317 0 SHEET 2 H 2 THR B 340 PHE B 346 -1 O ALA B 341 N LEU B 316 SHEET 1 I 2 VAL C 73 VAL C 78 0 SHEET 2 I 2 GLY C 81 ALA C 86 -1 O GLY C 81 N VAL C 78 SHEET 1 J 3 VAL C 95 PRO C 100 0 SHEET 2 J 3 LEU C 268 LYS C 272 -1 O PHE C 269 N VAL C 99 SHEET 3 J 3 TYR C 254 LYS C 257 -1 N GLU C 255 O SER C 270 SHEET 1 K 2 ASN C 242 HIS C 243 0 SHEET 2 K 2 TYR C 284 ILE C 285 1 O ILE C 285 N ASN C 242 SHEET 1 L 2 ALA C 311 GLU C 317 0 SHEET 2 L 2 THR C 340 PHE C 346 -1 O ALA C 341 N LEU C 316 SITE 1 AC1 17 GLU A 80 GLY A 81 LEU A 82 SER A 221 SITE 2 AC1 17 ARG A 222 ASP A 239 ASN A 242 HIS A 243 SITE 3 AC1 17 TYR A 287 TYR A 300 GLY A 301 PHE A 302 SITE 4 AC1 17 HOH A 810 HOH A 845 HOH A 847 HOH A 848 SITE 5 AC1 17 HOH A 932 SITE 1 AC2 22 GLU B 80 GLY B 81 LEU B 82 SER B 221 SITE 2 AC2 22 ARG B 222 ASP B 239 LEU B 240 ILE B 241 SITE 3 AC2 22 ASN B 242 HIS B 243 TYR B 287 TYR B 300 SITE 4 AC2 22 GLY B 301 PHE B 302 HOH B 805 HOH B 817 SITE 5 AC2 22 HOH B 843 HOH B 871 HOH B 886 HOH B 906 SITE 6 AC2 22 HOH B 930 PHE C 263 SITE 1 AC3 20 GLU C 80 GLY C 81 LEU C 82 PRO C 151 SITE 2 AC3 20 SER C 221 ARG C 222 ASP C 239 LEU C 240 SITE 3 AC3 20 ILE C 241 ASN C 242 HIS C 243 TYR C 287 SITE 4 AC3 20 TYR C 300 GLY C 301 PHE C 302 HOH C 811 SITE 5 AC3 20 HOH C 819 HOH C 827 HOH C 854 HOH C 861 CRYST1 131.450 155.860 263.610 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007607 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006416 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003793 0.00000