HEADER TRANSFERASE 22-MAY-06 2H3D TITLE CRYSTAL STRUCTURE OF MOUSE NICOTINAMIDE TITLE 2 PHOSPHORIBOSYLTRANSFERASE/VISFATIN/PRE-B CELL COLONY ENHANCING FACTOR TITLE 3 IN COMPLEX WITH NICOTINAMIDE MONONULEOTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NAMPRTASE, NAMPT, PRE-B-CELL COLONY-ENHANCING FACTOR 1 COMPND 5 HOMOLOG, PBEF, VISFATIN; COMPND 6 EC: 2.4.2.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: NAMPT, PBEF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: E. COLI ROSETTA CELLS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28A(+)-NAMPT KEYWDS NMN, TYPEII PHSOPHORIBOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.WANG,X.ZHANG,P.BHEDA,J.R.REVOLLO,S.I.IMAI,C.WOLBERGER REVDAT 4 16-OCT-24 2H3D 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 2H3D 1 VERSN REVDAT 2 18-JUL-06 2H3D 1 JRNL REVDAT 1 20-JUN-06 2H3D 0 JRNL AUTH T.WANG,X.ZHANG,P.BHEDA,J.R.REVOLLO,S.I.IMAI,C.WOLBERGER JRNL TITL STRUCTURE OF NAMPT/PBEF/VISFATIN, A MAMMALIAN NAD(+) JRNL TITL 2 BIOSYNTHETIC ENZYME. JRNL REF NAT.STRUCT.MOL.BIOL. V. 13 661 2006 JRNL REFN ISSN 1545-9993 JRNL PMID 16783373 JRNL DOI 10.1038/NSMB1114 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1891749.850 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 61048 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3043 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8795 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 471 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7431 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 163 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.77000 REMARK 3 B22 (A**2) : -3.39000 REMARK 3 B33 (A**2) : -5.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -7.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.22 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.26 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.770 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.230 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.820 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.080 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.980 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 43.29 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2H3D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037878. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 200.0 REMARK 200 PH : 7.80 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61073 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 MG/ML SE-MET NAMPT WITH 10 MM ADDED REMARK 280 NMN AND RESERVOIR SOLUTION CONTAINING 0.1 M HEPES PH 7.8, 0.1 M REMARK 280 NA ACETATE, AND 14.5% PEG4000 IN A 1:1 RATIO IN A TOTAL INITIAL REMARK 280 DROP VOLUME OF 2 MICROLITER., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K, PH 7.80 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.98000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSEMBLY IS THE SAME AS THE DIMER IN THE REMARK 300 ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 ALA A 7 REMARK 465 LYS A 42 REMARK 465 LYS A 43 REMARK 465 THR A 44 REMARK 465 GLU A 45 REMARK 465 ASN A 46 REMARK 465 SER A 47 REMARK 465 LYS A 48 REMARK 465 VAL A 49 REMARK 465 ARG A 50 REMARK 465 LYS A 51 REMARK 465 VAL A 52 REMARK 465 ILE A 484 REMARK 465 GLU A 485 REMARK 465 GLN A 486 REMARK 465 ASP A 487 REMARK 465 VAL A 488 REMARK 465 ALA A 489 REMARK 465 PRO A 490 REMARK 465 HIS A 491 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 1 REMARK 465 ASN B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 GLU B 6 REMARK 465 ALA B 7 REMARK 465 GLU B 8 REMARK 465 LYS B 42 REMARK 465 LYS B 43 REMARK 465 THR B 44 REMARK 465 GLU B 45 REMARK 465 ASN B 46 REMARK 465 SER B 47 REMARK 465 LYS B 48 REMARK 465 VAL B 49 REMARK 465 ARG B 50 REMARK 465 LYS B 51 REMARK 465 VAL B 52 REMARK 465 ILE B 484 REMARK 465 GLU B 485 REMARK 465 GLN B 486 REMARK 465 ASP B 487 REMARK 465 VAL B 488 REMARK 465 ALA B 489 REMARK 465 PRO B 490 REMARK 465 HIS B 491 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 14 50.72 -109.63 REMARK 500 ARG A 40 143.12 -39.98 REMARK 500 ASP A 93 158.94 179.49 REMARK 500 CYS A 141 40.57 -102.06 REMARK 500 THR A 220 78.65 -101.16 REMARK 500 TYR A 231 -50.98 -128.48 REMARK 500 TYR A 281 -50.90 -124.52 REMARK 500 GLU A 293 -74.04 -133.02 REMARK 500 ASP A 313 25.57 -152.30 REMARK 500 ASP A 416 73.52 -158.43 REMARK 500 ALA B 14 53.77 -110.58 REMARK 500 GLU B 187 -2.50 -59.47 REMARK 500 PHE B 269 51.72 -116.66 REMARK 500 TYR B 281 -50.56 -124.47 REMARK 500 GLU B 293 -71.31 -128.91 REMARK 500 ASP B 313 21.57 -148.78 REMARK 500 ASP B 416 73.28 -161.51 REMARK 500 ASN B 439 -159.67 -102.87 REMARK 500 GLN B 481 159.86 -47.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NMN A 3819 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NMN B 4819 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2H3B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MOUSE NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE/ REMARK 900 VISFATIN/PRE-B CELL ENHACING FACTOR APOENZYME DBREF 2H3D A 1 491 UNP Q99KQ4 NAMPT_MOUSE 1 491 DBREF 2H3D B 1 491 UNP Q99KQ4 NAMPT_MOUSE 1 491 SEQADV 2H3D MSE A 1 UNP Q99KQ4 MET 1 MODIFIED RESIDUE SEQADV 2H3D MSE A 368 UNP Q99KQ4 MET 368 MODIFIED RESIDUE SEQADV 2H3D MSE B 1 UNP Q99KQ4 MET 1 MODIFIED RESIDUE SEQADV 2H3D MSE B 368 UNP Q99KQ4 MET 368 MODIFIED RESIDUE SEQRES 1 A 494 GLY SER HIS MSE ASN ALA ALA ALA GLU ALA GLU PHE ASN SEQRES 2 A 494 ILE LEU LEU ALA THR ASP SER TYR LYS VAL THR HIS TYR SEQRES 3 A 494 LYS GLN TYR PRO PRO ASN THR SER LYS VAL TYR SER TYR SEQRES 4 A 494 PHE GLU CYS ARG GLU LYS LYS THR GLU ASN SER LYS VAL SEQRES 5 A 494 ARG LYS VAL LYS TYR GLU GLU THR VAL PHE TYR GLY LEU SEQRES 6 A 494 GLN TYR ILE LEU ASN LYS TYR LEU LYS GLY LYS VAL VAL SEQRES 7 A 494 THR LYS GLU LYS ILE GLN GLU ALA LYS GLU VAL TYR ARG SEQRES 8 A 494 GLU HIS PHE GLN ASP ASP VAL PHE ASN GLU ARG GLY TRP SEQRES 9 A 494 ASN TYR ILE LEU GLU LYS TYR ASP GLY HIS LEU PRO ILE SEQRES 10 A 494 GLU VAL LYS ALA VAL PRO GLU GLY SER VAL ILE PRO ARG SEQRES 11 A 494 GLY ASN VAL LEU PHE THR VAL GLU ASN THR ASP PRO GLU SEQRES 12 A 494 CYS TYR TRP LEU THR ASN TRP ILE GLU THR ILE LEU VAL SEQRES 13 A 494 GLN SER TRP TYR PRO ILE THR VAL ALA THR ASN SER ARG SEQRES 14 A 494 GLU GLN LYS LYS ILE LEU ALA LYS TYR LEU LEU GLU THR SEQRES 15 A 494 SER GLY ASN LEU ASP GLY LEU GLU TYR LYS LEU HIS ASP SEQRES 16 A 494 PHE GLY TYR ARG GLY VAL SER SER GLN GLU THR ALA GLY SEQRES 17 A 494 ILE GLY ALA SER ALA HIS LEU VAL ASN PHE LYS GLY THR SEQRES 18 A 494 ASP THR VAL ALA GLY ILE ALA LEU ILE LYS LYS TYR TYR SEQRES 19 A 494 GLY THR LYS ASP PRO VAL PRO GLY TYR SER VAL PRO ALA SEQRES 20 A 494 ALA GLU HIS SER THR ILE THR ALA TRP GLY LYS ASP HIS SEQRES 21 A 494 GLU LYS ASP ALA PHE GLU HIS ILE VAL THR GLN PHE SER SEQRES 22 A 494 SER VAL PRO VAL SER VAL VAL SER ASP SER TYR ASP ILE SEQRES 23 A 494 TYR ASN ALA CYS GLU LYS ILE TRP GLY GLU ASP LEU ARG SEQRES 24 A 494 HIS LEU ILE VAL SER ARG SER THR GLU ALA PRO LEU ILE SEQRES 25 A 494 ILE ARG PRO ASP SER GLY ASN PRO LEU ASP THR VAL LEU SEQRES 26 A 494 LYS VAL LEU ASP ILE LEU GLY LYS LYS PHE PRO VAL THR SEQRES 27 A 494 GLU ASN SER LYS GLY TYR LYS LEU LEU PRO PRO TYR LEU SEQRES 28 A 494 ARG VAL ILE GLN GLY ASP GLY VAL ASP ILE ASN THR LEU SEQRES 29 A 494 GLN GLU ILE VAL GLU GLY MSE LYS GLN LYS LYS TRP SER SEQRES 30 A 494 ILE GLU ASN VAL SER PHE GLY SER GLY GLY ALA LEU LEU SEQRES 31 A 494 GLN LYS LEU THR ARG ASP LEU LEU ASN CYS SER PHE LYS SEQRES 32 A 494 CYS SER TYR VAL VAL THR ASN GLY LEU GLY VAL ASN VAL SEQRES 33 A 494 PHE LYS ASP PRO VAL ALA ASP PRO ASN LYS ARG SER LYS SEQRES 34 A 494 LYS GLY ARG LEU SER LEU HIS ARG THR PRO ALA GLY ASN SEQRES 35 A 494 PHE VAL THR LEU GLU GLU GLY LYS GLY ASP LEU GLU GLU SEQRES 36 A 494 TYR GLY HIS ASP LEU LEU HIS THR VAL PHE LYS ASN GLY SEQRES 37 A 494 LYS VAL THR LYS SER TYR SER PHE ASP GLU VAL ARG LYS SEQRES 38 A 494 ASN ALA GLN LEU ASN ILE GLU GLN ASP VAL ALA PRO HIS SEQRES 1 B 494 GLY SER HIS MSE ASN ALA ALA ALA GLU ALA GLU PHE ASN SEQRES 2 B 494 ILE LEU LEU ALA THR ASP SER TYR LYS VAL THR HIS TYR SEQRES 3 B 494 LYS GLN TYR PRO PRO ASN THR SER LYS VAL TYR SER TYR SEQRES 4 B 494 PHE GLU CYS ARG GLU LYS LYS THR GLU ASN SER LYS VAL SEQRES 5 B 494 ARG LYS VAL LYS TYR GLU GLU THR VAL PHE TYR GLY LEU SEQRES 6 B 494 GLN TYR ILE LEU ASN LYS TYR LEU LYS GLY LYS VAL VAL SEQRES 7 B 494 THR LYS GLU LYS ILE GLN GLU ALA LYS GLU VAL TYR ARG SEQRES 8 B 494 GLU HIS PHE GLN ASP ASP VAL PHE ASN GLU ARG GLY TRP SEQRES 9 B 494 ASN TYR ILE LEU GLU LYS TYR ASP GLY HIS LEU PRO ILE SEQRES 10 B 494 GLU VAL LYS ALA VAL PRO GLU GLY SER VAL ILE PRO ARG SEQRES 11 B 494 GLY ASN VAL LEU PHE THR VAL GLU ASN THR ASP PRO GLU SEQRES 12 B 494 CYS TYR TRP LEU THR ASN TRP ILE GLU THR ILE LEU VAL SEQRES 13 B 494 GLN SER TRP TYR PRO ILE THR VAL ALA THR ASN SER ARG SEQRES 14 B 494 GLU GLN LYS LYS ILE LEU ALA LYS TYR LEU LEU GLU THR SEQRES 15 B 494 SER GLY ASN LEU ASP GLY LEU GLU TYR LYS LEU HIS ASP SEQRES 16 B 494 PHE GLY TYR ARG GLY VAL SER SER GLN GLU THR ALA GLY SEQRES 17 B 494 ILE GLY ALA SER ALA HIS LEU VAL ASN PHE LYS GLY THR SEQRES 18 B 494 ASP THR VAL ALA GLY ILE ALA LEU ILE LYS LYS TYR TYR SEQRES 19 B 494 GLY THR LYS ASP PRO VAL PRO GLY TYR SER VAL PRO ALA SEQRES 20 B 494 ALA GLU HIS SER THR ILE THR ALA TRP GLY LYS ASP HIS SEQRES 21 B 494 GLU LYS ASP ALA PHE GLU HIS ILE VAL THR GLN PHE SER SEQRES 22 B 494 SER VAL PRO VAL SER VAL VAL SER ASP SER TYR ASP ILE SEQRES 23 B 494 TYR ASN ALA CYS GLU LYS ILE TRP GLY GLU ASP LEU ARG SEQRES 24 B 494 HIS LEU ILE VAL SER ARG SER THR GLU ALA PRO LEU ILE SEQRES 25 B 494 ILE ARG PRO ASP SER GLY ASN PRO LEU ASP THR VAL LEU SEQRES 26 B 494 LYS VAL LEU ASP ILE LEU GLY LYS LYS PHE PRO VAL THR SEQRES 27 B 494 GLU ASN SER LYS GLY TYR LYS LEU LEU PRO PRO TYR LEU SEQRES 28 B 494 ARG VAL ILE GLN GLY ASP GLY VAL ASP ILE ASN THR LEU SEQRES 29 B 494 GLN GLU ILE VAL GLU GLY MSE LYS GLN LYS LYS TRP SER SEQRES 30 B 494 ILE GLU ASN VAL SER PHE GLY SER GLY GLY ALA LEU LEU SEQRES 31 B 494 GLN LYS LEU THR ARG ASP LEU LEU ASN CYS SER PHE LYS SEQRES 32 B 494 CYS SER TYR VAL VAL THR ASN GLY LEU GLY VAL ASN VAL SEQRES 33 B 494 PHE LYS ASP PRO VAL ALA ASP PRO ASN LYS ARG SER LYS SEQRES 34 B 494 LYS GLY ARG LEU SER LEU HIS ARG THR PRO ALA GLY ASN SEQRES 35 B 494 PHE VAL THR LEU GLU GLU GLY LYS GLY ASP LEU GLU GLU SEQRES 36 B 494 TYR GLY HIS ASP LEU LEU HIS THR VAL PHE LYS ASN GLY SEQRES 37 B 494 LYS VAL THR LYS SER TYR SER PHE ASP GLU VAL ARG LYS SEQRES 38 B 494 ASN ALA GLN LEU ASN ILE GLU GLN ASP VAL ALA PRO HIS MODRES 2H3D MSE A 368 MET SELENOMETHIONINE MODRES 2H3D MSE B 368 MET SELENOMETHIONINE HET MSE A 368 8 HET MSE B 368 8 HET NMN A3819 22 HET NMN B4819 22 HETNAM MSE SELENOMETHIONINE HETNAM NMN BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE HETSYN NMN NICOTINAMIDE MONONUCLEOTIDE FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 3 NMN 2(C11 H16 N2 O8 P 1+) FORMUL 5 HOH *163(H2 O) HELIX 1 1 ASN A 10 ALA A 14 5 5 HELIX 2 2 ASP A 16 GLN A 25 5 10 HELIX 3 3 GLY A 61 LEU A 70 1 10 HELIX 4 4 THR A 76 PHE A 91 1 16 HELIX 5 5 ASN A 97 ASP A 109 1 13 HELIX 6 6 ASP A 138 TYR A 142 5 5 HELIX 7 7 TRP A 143 ILE A 148 1 6 HELIX 8 8 ILE A 148 GLN A 154 1 7 HELIX 9 9 SER A 155 GLY A 181 1 27 HELIX 10 10 GLY A 185 TYR A 188 5 4 HELIX 11 11 SER A 200 VAL A 213 1 14 HELIX 12 12 VAL A 221 TYR A 231 1 11 HELIX 13 13 GLU A 246 ALA A 252 1 7 HELIX 14 14 TRP A 253 ASP A 256 5 4 HELIX 15 15 HIS A 257 PHE A 269 1 13 HELIX 16 16 ASP A 282 LYS A 289 1 8 HELIX 17 17 LEU A 295 VAL A 300 1 6 HELIX 18 18 ASN A 316 PHE A 332 1 17 HELIX 19 19 ASP A 357 LYS A 371 1 15 HELIX 20 20 SER A 374 GLU A 376 5 3 HELIX 21 21 GLY A 383 GLN A 388 1 6 HELIX 22 22 ASP A 420 ARG A 424 5 5 HELIX 23 23 GLY A 446 GLU A 451 5 6 HELIX 24 24 SER A 472 GLN A 481 1 10 HELIX 25 25 ASN B 10 ALA B 14 5 5 HELIX 26 26 ASP B 16 GLN B 25 5 10 HELIX 27 27 GLY B 61 LEU B 70 1 10 HELIX 28 28 THR B 76 GLN B 92 1 17 HELIX 29 29 ASN B 97 ASP B 109 1 13 HELIX 30 30 ASP B 138 TYR B 142 5 5 HELIX 31 31 TRP B 143 ILE B 148 1 6 HELIX 32 32 ILE B 148 GLN B 154 1 7 HELIX 33 33 SER B 155 GLY B 181 1 27 HELIX 34 34 GLY B 185 TYR B 188 5 4 HELIX 35 35 SER B 200 LEU B 212 1 13 HELIX 36 36 VAL B 221 TYR B 231 1 11 HELIX 37 37 GLU B 246 ALA B 252 1 7 HELIX 38 38 TRP B 253 ASP B 256 5 4 HELIX 39 39 HIS B 257 PHE B 269 1 13 HELIX 40 40 ASP B 282 LYS B 289 1 8 HELIX 41 41 LEU B 295 VAL B 300 1 6 HELIX 42 42 ASN B 316 PHE B 332 1 17 HELIX 43 43 ASP B 357 LYS B 371 1 15 HELIX 44 44 SER B 374 GLU B 376 5 3 HELIX 45 45 GLY B 383 GLN B 388 1 6 HELIX 46 46 THR B 391 LEU B 395 5 5 HELIX 47 47 ASP B 420 ARG B 424 5 5 HELIX 48 48 GLY B 446 GLU B 451 5 6 HELIX 49 49 SER B 472 GLN B 481 1 10 SHEET 1 A 7 LEU A 409 ASN A 412 0 SHEET 2 A 7 CYS A 397 THR A 406 -1 N VAL A 404 O VAL A 411 SHEET 3 A 7 THR A 30 CYS A 39 -1 N TYR A 34 O TYR A 403 SHEET 4 A 7 VAL A 130 ASN A 136 -1 O VAL A 134 N SER A 35 SHEET 5 A 7 ILE A 114 ALA A 118 -1 N GLU A 115 O GLU A 135 SHEET 6 A 7 HIS A 459 LYS A 463 -1 O HIS A 459 N ALA A 118 SHEET 7 A 7 LYS A 466 VAL A 467 -1 O LYS A 466 N LYS A 463 SHEET 1 B 2 GLU A 56 VAL A 58 0 SHEET 2 B 2 VAL A 124 PRO A 126 -1 O ILE A 125 N THR A 57 SHEET 1 C 5 LEU A 190 ASP A 192 0 SHEET 2 C 5 VAL A 378 SER A 382 1 O PHE A 380 N HIS A 191 SHEET 3 C 5 LEU A 348 GLN A 352 1 N VAL A 350 O SER A 379 SHEET 4 C 5 LEU A 308 ARG A 311 1 N LEU A 308 O ARG A 349 SHEET 5 C 5 VAL A 274 VAL A 277 1 N VAL A 274 O ILE A 309 SHEET 1 D 2 THR A 335 GLU A 336 0 SHEET 2 D 2 LYS A 342 LEU A 343 -1 O LEU A 343 N THR A 335 SHEET 1 E 2 SER A 431 ARG A 434 0 SHEET 2 E 2 PHE A 440 LEU A 443 -1 O VAL A 441 N HIS A 433 SHEET 1 F 7 LEU B 409 ASN B 412 0 SHEET 2 F 7 CYS B 397 THR B 406 -1 N VAL B 404 O VAL B 411 SHEET 3 F 7 THR B 30 CYS B 39 -1 N TYR B 34 O TYR B 403 SHEET 4 F 7 VAL B 130 ASN B 136 -1 O VAL B 134 N SER B 35 SHEET 5 F 7 ILE B 114 ALA B 118 -1 N GLU B 115 O GLU B 135 SHEET 6 F 7 HIS B 459 LYS B 463 -1 O VAL B 461 N VAL B 116 SHEET 7 F 7 LYS B 466 VAL B 467 -1 O LYS B 466 N LYS B 463 SHEET 1 G 2 GLU B 56 VAL B 58 0 SHEET 2 G 2 VAL B 124 PRO B 126 -1 O ILE B 125 N THR B 57 SHEET 1 H 5 LEU B 190 ASP B 192 0 SHEET 2 H 5 VAL B 378 SER B 382 1 O PHE B 380 N HIS B 191 SHEET 3 H 5 LEU B 348 GLN B 352 1 N GLN B 352 O SER B 379 SHEET 4 H 5 LEU B 308 ARG B 311 1 N LEU B 308 O ARG B 349 SHEET 5 H 5 VAL B 274 VAL B 277 1 N VAL B 274 O ILE B 309 SHEET 1 I 2 THR B 335 GLU B 336 0 SHEET 2 I 2 LYS B 342 LEU B 343 -1 O LEU B 343 N THR B 335 SHEET 1 J 2 SER B 431 ARG B 434 0 SHEET 2 J 2 PHE B 440 LEU B 443 -1 O VAL B 441 N HIS B 433 LINK C GLY A 367 N MSE A 368 1555 1555 1.33 LINK C MSE A 368 N LYS A 369 1555 1555 1.33 LINK C GLY B 367 N MSE B 368 1555 1555 1.33 LINK C MSE B 368 N LYS B 369 1555 1555 1.33 SITE 1 AC1 13 PHE A 193 ARG A 196 ASP A 219 ARG A 311 SITE 2 AC1 13 ASP A 313 GLY A 353 GLY A 383 GLY A 384 SITE 3 AC1 13 HOH A3852 HOH A3894 HOH A3898 TYR B 18 SITE 4 AC1 13 ARG B 392 SITE 1 AC2 14 ASP A 16 TYR A 18 ARG A 392 PHE B 193 SITE 2 AC2 14 ARG B 196 ASP B 219 ALA B 244 ARG B 311 SITE 3 AC2 14 ASP B 313 GLY B 353 GLY B 383 GLY B 384 SITE 4 AC2 14 HOH B4825 HOH B4891 CRYST1 60.460 107.960 83.650 90.00 96.98 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016540 0.000000 0.002025 0.00000 SCALE2 0.000000 0.009263 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012044 0.00000