HEADER TOXIN 26-MAY-06 2H5F TITLE DENMOTOXIN: A THE THREE-FINGER TOXIN FROM COLUBRID SNAKE BOIGA TITLE 2 DENDROPHILA WITH BIRD-SPECIFIC ACTIVITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: DENMOTOXIN; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOIGA DENDROPHILA; SOURCE 3 ORGANISM_TAXID: 46286; SOURCE 4 SECRETION: VENOM KEYWDS THREE-FINGER TOXIN, NEUROTOXIN, SNAKE VENOM, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR J.PAWLAK,R.M.KINI,E.A.STURA REVDAT 3 16-OCT-24 2H5F 1 REMARK LINK REVDAT 2 24-FEB-09 2H5F 1 VERSN REVDAT 1 29-AUG-06 2H5F 0 JRNL AUTH J.PAWLAK,S.P.MACKESSY,B.G.FRY,M.BHATIA,G.MOURIER, JRNL AUTH 2 C.FRUCHART-GAILLARD,D.SERVENT,R.MENEZ,E.STURA,A.MENEZ, JRNL AUTH 3 R.M.KINI JRNL TITL DENMOTOXIN, A THREE-FINGER TOXIN FROM THE COLUBRID SNAKE JRNL TITL 2 BOIGA DENDROPHILA (MANGROVE CATSNAKE) WITH BIRD-SPECIFIC JRNL TITL 3 ACTIVITY. JRNL REF J.BIOL.CHEM. V. 281 29030 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16864572 JRNL DOI 10.1074/JBC.M605850200 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 11487 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 584 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 872 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1135 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 284 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.31000 REMARK 3 B22 (A**2) : -0.40000 REMARK 3 B33 (A**2) : -0.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.43000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.201 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.221 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1189 ; 0.032 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 975 ; 0.021 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1610 ; 2.088 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2294 ; 1.036 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 147 ; 5.561 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 160 ; 0.148 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1295 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 237 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 384 ; 0.363 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1281 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 661 ; 0.095 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 174 ; 0.231 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.071 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 38 ; 0.299 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 91 ; 0.329 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 39 ; 0.263 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 737 ; 2.079 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1179 ; 3.727 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 452 ; 4.235 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 431 ; 6.098 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2H5F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000037951. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.006768 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50240 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 52.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M NA, KPO4, PH 7.9, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.45500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.01900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.45500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.01900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 ALA A 2 REMARK 465 GLN B 1 REMARK 465 ALA B 2 REMARK 465 VAL B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 11 CD1 REMARK 470 ILE A 23 CD1 REMARK 470 ASP A 77 O REMARK 470 ILE B 11 CD1 REMARK 470 ILE B 23 CD1 REMARK 470 ASP B 77 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 440 O HOH B 449 1.95 REMARK 500 O HOH A 378 O HOH A 393 2.08 REMARK 500 O GLY B 4 O HOH B 399 2.11 REMARK 500 O GLU A 45 O HOH A 430 2.15 REMARK 500 OD2 ASP B 77 O HOH B 409 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 358 O HOH A 364 4656 2.01 REMARK 500 O HOH A 343 O HOH A 364 4656 2.06 REMARK 500 O HOH A 314 O HOH A 318 4656 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 19 CB SER A 19 OG -0.086 REMARK 500 MET A 56 CG MET A 56 SD 0.167 REMARK 500 GLU B 64 CD GLU B 64 OE2 0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 53 CA - CB - SG ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP B 77 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 30 -2.10 76.97 REMARK 500 ASP A 41 -68.57 -151.92 REMARK 500 GLU A 42 -78.98 -135.63 REMARK 500 TYR B 30 -0.24 69.21 REMARK 500 SER B 76 -72.30 -62.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 305 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 14 O REMARK 620 2 ARG A 15 O 70.2 REMARK 620 3 THR A 17 O 109.7 73.2 REMARK 620 4 THR A 17 OG1 65.5 102.6 67.0 REMARK 620 5 SER A 19 OG 90.4 160.5 116.4 68.9 REMARK 620 6 SER A 19 N 126.2 140.5 67.5 64.8 53.2 REMARK 620 7 SER A 19 O 150.9 135.7 93.3 110.6 62.9 46.7 REMARK 620 8 CYS A 21 SG 73.0 86.6 156.5 130.7 86.5 130.9 93.0 REMARK 620 9 HOH A 379 O 118.9 64.3 94.1 160.2 128.2 114.9 75.2 65.8 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 308 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 20 N REMARK 620 2 HOH A 394 O 92.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 306 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 14 O REMARK 620 2 ARG B 15 O 70.3 REMARK 620 3 THR B 17 O 110.3 74.3 REMARK 620 4 SER B 19 O 150.8 136.6 91.3 REMARK 620 5 SER B 19 OG 88.7 158.9 112.4 64.4 REMARK 620 6 SER B 19 N 125.1 139.9 65.6 46.3 51.9 REMARK 620 7 CYS B 21 SG 72.5 90.0 161.3 93.4 85.9 128.9 REMARK 620 8 HOH B 339 O 115.0 60.1 94.5 81.1 135.7 119.9 68.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 308 DBREF 2H5F A 26 53 UNP P83490 NXAC_COERA 26 55 DBREF 2H5F B 26 53 UNP P83490 NXAC_COERA 26 55 SEQRES 1 A 77 GLN ALA VAL GLY LEU PRO HIS GLY PHE CYS ILE GLN CYS SEQRES 2 A 77 ASN ARG LYS THR TRP SER ASN CYS SER ILE GLY HIS ARG SEQRES 3 A 77 CYS LEU PRO TYR HIS MET THR CYS TYR THR LEU TYR LYS SEQRES 4 A 77 PRO ASP GLU ASN GLY GLU MET LYS TRP ALA VAL LYS GLY SEQRES 5 A 77 CYS ALA ARG MET CYS PRO THR ALA LYS SER GLY GLU ARG SEQRES 6 A 77 VAL LYS CYS CYS THR GLY ALA SER CYS ASN SER ASP SEQRES 1 B 77 GLN ALA VAL GLY LEU PRO HIS GLY PHE CYS ILE GLN CYS SEQRES 2 B 77 ASN ARG LYS THR TRP SER ASN CYS SER ILE GLY HIS ARG SEQRES 3 B 77 CYS LEU PRO TYR HIS MET THR CYS TYR THR LEU TYR LYS SEQRES 4 B 77 PRO ASP GLU ASN GLY GLU MET LYS TRP ALA VAL LYS GLY SEQRES 5 B 77 CYS ALA ARG MET CYS PRO THR ALA LYS SER GLY GLU ARG SEQRES 6 B 77 VAL LYS CYS CYS THR GLY ALA SER CYS ASN SER ASP HET PO4 A 301 5 HET PO4 A 303 5 HET K A 305 1 HET NA A 308 1 HET PO4 B 302 5 HET PO4 B 304 5 HET K B 306 1 HET NA B 307 1 HETNAM PO4 PHOSPHATE ION HETNAM K POTASSIUM ION HETNAM NA SODIUM ION FORMUL 3 PO4 4(O4 P 3-) FORMUL 5 K 2(K 1+) FORMUL 6 NA 2(NA 1+) FORMUL 11 HOH *284(H2 O) HELIX 1 1 SER A 73 ASP A 77 5 5 SHEET 1 A 2 HIS A 7 CYS A 10 0 SHEET 2 A 2 HIS A 25 PRO A 29 -1 O CYS A 27 N GLY A 8 SHEET 1 B 4 CYS A 13 ASN A 14 0 SHEET 2 B 4 LYS A 47 ALA A 54 -1 O LYS A 51 N CYS A 13 SHEET 3 B 4 THR A 33 LYS A 39 -1 N LEU A 37 O ALA A 49 SHEET 4 B 4 ARG A 65 CYS A 69 -1 O ARG A 65 N TYR A 38 SHEET 1 C 2 HIS B 7 CYS B 10 0 SHEET 2 C 2 HIS B 25 PRO B 29 -1 O CYS B 27 N GLY B 8 SHEET 1 D 4 CYS B 13 ASN B 14 0 SHEET 2 D 4 MET B 46 ALA B 54 -1 O LYS B 51 N CYS B 13 SHEET 3 D 4 THR B 33 PRO B 40 -1 N LEU B 37 O VAL B 50 SHEET 4 D 4 ARG B 65 CYS B 69 -1 O ARG B 65 N TYR B 38 SSBOND 1 CYS A 10 CYS A 34 1555 1555 2.01 SSBOND 2 CYS A 13 CYS A 21 1555 1555 2.10 SSBOND 3 CYS A 27 CYS A 53 1555 1555 2.05 SSBOND 4 CYS A 57 CYS A 68 1555 1555 2.03 SSBOND 5 CYS A 69 CYS A 74 1555 1555 2.07 SSBOND 6 CYS B 10 CYS B 34 1555 1555 2.05 SSBOND 7 CYS B 13 CYS B 21 1555 1555 2.07 SSBOND 8 CYS B 27 CYS B 53 1555 1555 2.02 SSBOND 9 CYS B 57 CYS B 68 1555 1555 2.05 SSBOND 10 CYS B 69 CYS B 74 1555 1555 2.07 LINK O ASN A 14 K K A 305 1555 1555 2.73 LINK O ARG A 15 K K A 305 1555 1555 3.08 LINK O THR A 17 K K A 305 1555 1555 3.04 LINK OG1 THR A 17 K K A 305 1555 1555 2.98 LINK OG SER A 19 K K A 305 1555 1555 3.02 LINK N SER A 19 K K A 305 1555 1555 3.50 LINK O SER A 19 K K A 305 1555 1555 2.83 LINK N ASN A 20 NA NA A 308 1555 1555 2.91 LINK SG CYS A 21 K K A 305 1555 1555 3.28 LINK K K A 305 O HOH A 379 1555 1555 3.03 LINK NA NA A 308 O HOH A 394 1555 1555 2.96 LINK O ASN B 14 K K B 306 1555 1555 2.71 LINK O ARG B 15 K K B 306 1555 1555 3.30 LINK O THR B 17 K K B 306 1555 1555 2.88 LINK O SER B 19 K K B 306 1555 1555 2.87 LINK OG SER B 19 K K B 306 1555 1555 2.91 LINK N SER B 19 K K B 306 1555 1555 3.54 LINK N ASN B 20 NA NA B 307 1555 1555 2.87 LINK SG CYS B 21 K K B 306 1555 1555 3.26 LINK K K B 306 O HOH B 339 1555 1555 3.23 SITE 1 AC1 10 CYS A 13 ASN A 14 THR A 17 SER A 19 SITE 2 AC1 10 HIS A 31 ARG A 55 HOH A 317 HOH A 385 SITE 3 AC1 10 HOH A 414 HOH A 416 SITE 1 AC2 10 CYS B 13 ASN B 14 THR B 17 SER B 19 SITE 2 AC2 10 HIS B 31 ARG B 55 HOH B 308 HOH B 324 SITE 3 AC2 10 HOH B 351 HOH B 384 SITE 1 AC3 8 HIS A 25 ARG A 26 HOH A 311 HOH A 319 SITE 2 AC3 8 HOH A 332 HOH A 352 HIS B 7 ARG B 26 SITE 1 AC4 8 HIS A 7 ARG A 26 HIS B 25 ARG B 26 SITE 2 AC4 8 HOH B 347 HOH B 363 HOH B 420 HOH B 438 SITE 1 AC5 6 ASN A 14 ARG A 15 THR A 17 SER A 19 SITE 2 AC5 6 CYS A 21 HOH A 379 SITE 1 AC6 5 ASN B 14 ARG B 15 THR B 17 SER B 19 SITE 2 AC6 5 CYS B 21 SITE 1 AC7 3 HOH A 429 SER B 19 ASN B 20 SITE 1 AC8 3 SER A 19 ASN A 20 HOH A 394 CRYST1 98.910 34.038 54.377 90.00 118.36 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010110 0.000000 0.005457 0.00000 SCALE2 0.000000 0.029379 -0.000001 0.00000 SCALE3 0.000000 0.000000 0.020898 0.00000