HEADER TRANSFERASE 26-MAY-06 2H5M TITLE NMR SOLUTION STRUCTURE OF A GCN5-LIKE PUTATIVE N-ACETYLTRANSFERASE TITLE 2 FROM STAPHYLOCOCCUS AUREUS COMPLEXED WITH ACETYL-COA. NORTHEAST TITLE 3 STRUCTURAL GENOMICS CONSORTIUM TARGET ZR31 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYLTRANSFERASE, GNAT FAMILY; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SACOL2532; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 93062; SOURCE 4 STRAIN: COL; SOURCE 5 GENE: SACOL2532; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21; SOURCE 11 OTHER_DETAILS: CONSTRUCT PROVIDES C-TERMINAL HIS TAG (8 RESIDUES) KEYWDS GNAT, N-ACETYLTRANSFERASE DOMAIN, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 NESG, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.R.CORT,T.A.RAMELOT,T.B.ACTON,L.MA,R.B.XIAO,G.T.MONTELIONE, AUTHOR 2 M.A.KENNEDY,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 5 13-JUL-11 2H5M 1 VERSN REVDAT 4 23-DEC-08 2H5M 1 JRNL VERSN REVDAT 3 07-OCT-08 2H5M 1 JRNL REMARK REVDAT 2 01-JAN-08 2H5M 1 AUTHOR JRNL DBREF SEQADV REVDAT 1 28-NOV-06 2H5M 0 JRNL AUTH J.R.CORT,T.A.RAMELOT,D.MURRAY,T.B.ACTON,L.C.MA,R.XIAO, JRNL AUTH 2 G.T.MONTELIONE,M.A.KENNEDY JRNL TITL STRUCTURE OF AN ACETYL-COA BINDING PROTEIN FROM JRNL TITL 2 STAPHYLOCOCCUS AUREUS REPRESENTING A NOVEL SUBFAMILY OF JRNL TITL 3 GCN5-RELATED N-ACETYLTRANSFERASE-LIKE PROTEINS JRNL REF J.STRUCT.FUNCT.GENOM. V. 9 7 2008 JRNL REFN ISSN 1345-711X JRNL PMID 18709443 JRNL DOI 10.1007/S10969-008-9041-Z REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : HADDOCK 1.3 REMARK 3 AUTHORS : A. BONVIN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2H5M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-06. REMARK 100 THE RCSB ID CODE IS RCSB037958. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : .115 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM SACOL2532 U-15N,13C; 5 MM REMARK 210 ACETYL-COA, 20 MM MES, 100 MM REMARK 210 NACL, 5 MM CACL2, 0.02% NAN3; 1 REMARK 210 MM SACOL2532 U-15N,13C; 5 MM REMARK 210 ACETYL-COA, 20 MM MES, 100 MM REMARK 210 NACL, 5 MM CACL2, 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 1H-15N HSQC; 4D_13C-SEPARATED_ REMARK 210 NOESY; 3D EDITED-FILTERED 1H-C13 REMARK 210 NOESY HSQC; 2D DOUBLY C12- REMARK 210 FILTERED 1H-1H NOESY; 2D DOUBLY REMARK 210 C12-FILTERED 1H-1H TOCSY; 1H-13C REMARK 210 HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 97 REMARK 210 METHOD USED : REFINEMENT WAS CONDUCTED WITH REMARK 210 HADDOCK. STARTING STRUCTURES WERE REMARK 210 THE 1R57 ENSEMBLE, WHICH IS THE REMARK 210 PROTEIN IN THE ABSENCE OF LIGAND REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE SAMPLE CONTAINED ISOTOPE LABELED PROTEIN AND UNLABELED REMARK 210 LIGAND REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 96 HD1 HIS A 98 1.57 REMARK 500 HB3 HIS A 100 H HIS A 101 1.58 REMARK 500 HZ2 LYS A 12 OE2 GLU A 25 1.59 REMARK 500 HZ2 LYS A 58 OE2 GLU A 62 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 16 TYR A 88 CE1 TYR A 88 CZ 0.082 REMARK 500 16 TYR A 88 CZ TYR A 88 CE2 -0.087 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -69.99 -143.87 REMARK 500 1 GLU A 10 89.55 -62.18 REMARK 500 1 ASN A 21 44.38 -94.37 REMARK 500 1 ASP A 32 -85.68 -123.02 REMARK 500 1 ASN A 33 -56.39 -130.66 REMARK 500 1 LEU A 47 -68.33 -127.91 REMARK 500 1 GLN A 89 32.49 -82.24 REMARK 500 1 HIS A 97 -32.65 -179.77 REMARK 500 1 HIS A 99 -171.47 58.36 REMARK 500 1 HIS A 100 -92.85 59.78 REMARK 500 1 HIS A 101 -53.26 -177.16 REMARK 500 2 GLU A 10 95.41 -64.48 REMARK 500 2 ASP A 32 -80.00 -129.30 REMARK 500 2 ASN A 33 -50.75 -161.93 REMARK 500 2 ASP A 39 -72.36 -64.18 REMARK 500 2 GLU A 46 44.72 -75.98 REMARK 500 2 HIS A 99 76.30 62.93 REMARK 500 3 SER A 2 -62.40 -126.80 REMARK 500 3 GLU A 10 93.55 -63.65 REMARK 500 3 ASN A 21 42.17 -94.47 REMARK 500 3 ASP A 32 -86.99 -126.27 REMARK 500 3 ASN A 33 -59.32 -129.76 REMARK 500 3 LEU A 93 45.90 -83.55 REMARK 500 3 HIS A 97 -38.79 -177.68 REMARK 500 3 HIS A 99 -176.90 56.68 REMARK 500 3 HIS A 100 -84.65 62.09 REMARK 500 3 HIS A 101 -53.34 -167.42 REMARK 500 4 LEU A 4 -100.13 -116.08 REMARK 500 4 GLU A 5 137.52 69.18 REMARK 500 4 ASP A 32 33.05 -144.30 REMARK 500 4 ASN A 33 -66.37 67.85 REMARK 500 5 GLU A 10 87.48 -60.37 REMARK 500 5 ALA A 24 145.20 -172.17 REMARK 500 5 ASP A 32 -88.73 -141.72 REMARK 500 5 ASN A 33 -54.81 -151.47 REMARK 500 5 ASP A 39 -74.25 -68.39 REMARK 500 5 GLU A 96 66.52 -102.54 REMARK 500 6 ASN A 21 44.71 -102.71 REMARK 500 7 LEU A 4 -101.75 -122.89 REMARK 500 7 GLU A 5 137.23 67.62 REMARK 500 7 ASP A 32 37.50 -145.46 REMARK 500 7 ASN A 33 -73.03 63.23 REMARK 500 7 HIS A 98 94.77 -69.22 REMARK 500 8 LEU A 4 -101.07 -93.72 REMARK 500 8 GLU A 5 125.88 67.19 REMARK 500 8 GLU A 10 52.80 39.75 REMARK 500 8 ASP A 32 40.92 -148.77 REMARK 500 8 ASN A 33 -68.00 65.80 REMARK 500 8 LEU A 47 11.63 -140.16 REMARK 500 9 SER A 2 -79.43 67.42 REMARK 500 REMARK 500 THIS ENTRY HAS 134 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACO A 103 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1R57 RELATED DB: PDB REMARK 900 STRUCTURE OF THE SAME PROTEIN IN THE ABSENCE OF BOUND LIGAND REMARK 900 RELATED ID: ZR31 RELATED DB: TARGETDB DBREF 2H5M A 1 94 UNP Q5HD32 Q5HD32_STAAC 1 94 SEQADV 2H5M LEU A 95 UNP Q5HD32 EXPRESSION TAG SEQADV 2H5M GLU A 96 UNP Q5HD32 EXPRESSION TAG SEQADV 2H5M HIS A 97 UNP Q5HD32 EXPRESSION TAG SEQADV 2H5M HIS A 98 UNP Q5HD32 EXPRESSION TAG SEQADV 2H5M HIS A 99 UNP Q5HD32 EXPRESSION TAG SEQADV 2H5M HIS A 100 UNP Q5HD32 EXPRESSION TAG SEQADV 2H5M HIS A 101 UNP Q5HD32 EXPRESSION TAG SEQADV 2H5M HIS A 102 UNP Q5HD32 EXPRESSION TAG SEQRES 1 A 102 MET SER ASN LEU GLU ILE LYS GLN GLY GLU ASN LYS PHE SEQRES 2 A 102 TYR ILE GLY ASP ASP GLU ASN ASN ALA LEU ALA GLU ILE SEQRES 3 A 102 THR TYR ARG PHE VAL ASP ASN ASN GLU ILE ASN ILE ASP SEQRES 4 A 102 HIS THR GLY VAL SER ASP GLU LEU GLY GLY GLN GLY VAL SEQRES 5 A 102 GLY LYS LYS LEU LEU LYS ALA VAL VAL GLU HIS ALA ARG SEQRES 6 A 102 GLU ASN ASN LEU LYS ILE ILE ALA SER CYS SER PHE ALA SEQRES 7 A 102 LYS HIS MET LEU GLU LYS GLU ASP SER TYR GLN ASP VAL SEQRES 8 A 102 TYR LEU GLY LEU GLU HIS HIS HIS HIS HIS HIS HET ACO A 103 85 HETNAM ACO ACETYL COENZYME *A FORMUL 2 ACO C23 H38 N7 O17 P3 S HELIX 1 1 GLY A 51 ASN A 67 1 17 HELIX 2 2 CYS A 75 GLU A 85 1 11 HELIX 3 3 ASP A 86 GLN A 89 5 4 SHEET 1 A 5 LYS A 7 GLY A 9 0 SHEET 2 A 5 LYS A 12 GLY A 16 -1 O LYS A 12 N GLY A 9 SHEET 3 A 5 ALA A 22 PHE A 30 -1 O ILE A 26 N PHE A 13 SHEET 4 A 5 GLU A 35 VAL A 43 -1 O ASN A 37 N ARG A 29 SHEET 5 A 5 LYS A 70 ALA A 73 1 O LYS A 70 N ILE A 36 SITE 1 AC1 11 ASP A 39 THR A 41 GLY A 42 VAL A 43 SITE 2 AC1 11 GLN A 50 LYS A 54 CYS A 75 SER A 76 SITE 3 AC1 11 PHE A 77 HIS A 80 LYS A 84 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1