HEADER GENE REGULATION 01-JUN-06 2H6Q TITLE HISTONE H3 RECOGNITION AND PRESENTATION BY THE WDR5 MODULE OF THE MLL1 TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: WD-REPEAT PROTEIN 5; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 23-334; COMPND 5 SYNONYM: BMP2-INDUCED 3-KB GENE PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HISTONE H3 K4-ME3 9-RESIDUE PEPTIDE; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WDR5, BIG3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7-PET BASED; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED USING SOLID SOURCE 14 PHASE SYNTHESIS KEYWDS WDR5 WD40 WD-REPEAT HISTONE H3 MODIFICATION MLL SET CHROMATIN, GENE KEYWDS 2 REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR A.J.RUTHENBURG,W.-K.WANG,D.M.GRAYBOSCH,H.LI,C.D.ALLIS,D.J.PATEL, AUTHOR 2 G.L.VERDINE REVDAT 5 30-AUG-23 2H6Q 1 LINK REVDAT 4 13-JUL-11 2H6Q 1 VERSN REVDAT 3 24-FEB-09 2H6Q 1 VERSN REVDAT 2 15-AUG-06 2H6Q 1 JRNL REVDAT 1 04-JUL-06 2H6Q 0 JRNL AUTH A.J.RUTHENBURG,W.-K.WANG,D.M.GRAYBOSCH,H.LI,C.D.ALLIS, JRNL AUTH 2 D.J.PATEL,G.L.VERDINE JRNL TITL HISTONE H3 RECOGNITION AND PRESENTATION BY THE WDR5 MODULE JRNL TITL 2 OF THE MLL1 COMPLEX. JRNL REF NAT.STRUCT.MOL.BIOL. V. 13 704 2006 JRNL REFN ISSN 1545-9993 JRNL PMID 16829959 JRNL DOI 10.1038/NSMB1119 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 46407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2483 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2899 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.1540 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.2310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4826 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 498 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 25.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.88000 REMARK 3 B22 (A**2) : -0.81000 REMARK 3 B33 (A**2) : 1.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.68000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.135 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.859 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4938 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6700 ; 1.373 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 618 ; 7.062 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;30.906 ;25.158 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 850 ;12.423 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;17.190 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 760 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3618 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2205 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3360 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 467 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.162 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 38 ; 0.151 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3168 ; 0.782 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4988 ; 1.207 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2086 ; 2.208 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1712 ; 3.414 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 334 REMARK 3 ORIGIN FOR THE GROUP (A): 1.3480 .6642 33.4554 REMARK 3 T TENSOR REMARK 3 T11: -.0117 T22: -.0091 REMARK 3 T33: -.0137 T12: .0046 REMARK 3 T13: -.0105 T23: -.0137 REMARK 3 L TENSOR REMARK 3 L11: .2786 L22: .4334 REMARK 3 L33: .2083 L12: -.1608 REMARK 3 L13: -.1205 L23: -.0459 REMARK 3 S TENSOR REMARK 3 S11: .0106 S12: .0124 S13: -.0329 REMARK 3 S21: -.0221 S22: -.0456 S23: .0224 REMARK 3 S31: -.0075 S32: -.0200 S33: .0350 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 31 B 334 REMARK 3 ORIGIN FOR THE GROUP (A): -25.7345 23.1380 15.9983 REMARK 3 T TENSOR REMARK 3 T11: -.0142 T22: -.0125 REMARK 3 T33: -.0156 T12: .0068 REMARK 3 T13: -.0149 T23: .0048 REMARK 3 L TENSOR REMARK 3 L11: .4082 L22: .3108 REMARK 3 L33: .2859 L12: -.0387 REMARK 3 L13: -.0899 L23: .0973 REMARK 3 S TENSOR REMARK 3 S11: -.0339 S12: -.0004 S13: .0106 REMARK 3 S21: .0070 S22: -.0174 S23: -.0065 REMARK 3 S31: -.0064 S32: .0013 S33: .0513 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 7 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2668 6.6140 43.5833 REMARK 3 T TENSOR REMARK 3 T11: -.0386 T22: -.0160 REMARK 3 T33: -.0131 T12: .0103 REMARK 3 T13: -.0001 T23: -.0088 REMARK 3 L TENSOR REMARK 3 L11: 5.3951 L22: 5.1125 REMARK 3 L33: 10.2919 L12: 3.2339 REMARK 3 L13: 5.8628 L23: -.0135 REMARK 3 S TENSOR REMARK 3 S11: -.0519 S12: .1687 S13: -.1073 REMARK 3 S21: .1522 S22: -.0706 S23: -.1521 REMARK 3 S31: -.0072 S32: .2008 S33: .1226 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 7 REMARK 3 ORIGIN FOR THE GROUP (A): -34.8980 29.1206 6.1493 REMARK 3 T TENSOR REMARK 3 T11: -.0374 T22: -.0137 REMARK 3 T33: -.0156 T12: -.0091 REMARK 3 T13: -.0246 T23: .0160 REMARK 3 L TENSOR REMARK 3 L11: 8.1168 L22: 8.7222 REMARK 3 L33: 11.9623 L12: -4.2148 REMARK 3 L13: 9.1918 L23: -1.5874 REMARK 3 S TENSOR REMARK 3 S11: -.0448 S12: -.1365 S13: -.2641 REMARK 3 S21: -.0402 S22: -.0450 S23: .3246 REMARK 3 S31: -.0306 S32: -.2179 S33: .0899 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2H6Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000037998. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97941 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46407 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 33.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.27100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1ERJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN BY HANGING DROP REMARK 280 VAPOUR EQUILIBRATION IN NEXTAL PLATES AS FOLLOWS: 1 UL OF 10 15 REMARK 280 MG ML-1 PROTEIN SOLUTION (10 MM TRIS HCL (PH 7.4), 50 MM NACL, REMARK 280 AND 10 MM 2-MERCAPTOETHANOL) WERE MIXED WITH 1 UL OF WELL REMARK 280 SOLUTION COMPOSED OF 50 MM HEPES (PH 7.5), 100 MM POTASSIUM REMARK 280 FORMATE, AND 10-20% (W/V) POLYETHYLENE GLYCOL 3350 AND REMARK 280 EQUILIBRATED AT ROOM TEMPERATURE OVERNIGHT AGAINST 1 ML OF WELL REMARK 280 SOLUTION. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 67.12850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.16800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 67.12850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.16800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 23 REMARK 465 THR A 24 REMARK 465 GLN A 25 REMARK 465 SER A 26 REMARK 465 LYS A 27 REMARK 465 PRO A 28 REMARK 465 THR A 29 REMARK 465 PRO A 30 REMARK 465 ALA B 23 REMARK 465 THR B 24 REMARK 465 GLN B 25 REMARK 465 SER B 26 REMARK 465 LYS B 27 REMARK 465 PRO B 28 REMARK 465 THR B 29 REMARK 465 PRO B 30 REMARK 465 ARG C 8 REMARK 465 LYS C 9 REMARK 465 ARG D 8 REMARK 465 LYS D 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 256 O HOH A 453 2.07 REMARK 500 O HOH A 570 O HOH B 569 2.17 REMARK 500 O HOH A 383 O HOH A 568 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 67 8.20 81.84 REMARK 500 GLU A 151 5.36 81.27 REMARK 500 LEU A 234 36.38 -79.57 REMARK 500 LEU A 321 -167.76 -78.41 REMARK 500 ASP A 324 -65.56 -120.54 REMARK 500 LEU B 234 41.78 -83.43 REMARK 500 LEU B 321 -167.20 -79.54 REMARK 500 ASP B 324 -65.44 -123.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CO0 RELATED DB: PDB REMARK 900 WDR5 WITH UNMODIFIED HISTONE H3 REMARK 900 RELATED ID: 2H6N RELATED DB: PDB REMARK 900 WDR5 WITH HISTONE H3 DIMETHYLATED AT K4, COMPLEX I REMARK 900 RELATED ID: 2H68 RELATED DB: PDB REMARK 900 APO-WDR5 REMARK 900 RELATED ID: 2H6K RELATED DB: PDB REMARK 900 WDR5 WITH HISTONE H3 MONOMETHYLATED AT K4 REMARK 900 RELATED ID: 2CNX RELATED DB: PDB REMARK 900 WDR5 WITH HISTONE H3 DIMETHYLATED AT K4, COMPLEX II DBREF 2H6Q A 23 334 UNP P61964 WDR5_HUMAN 23 334 DBREF 2H6Q B 23 334 UNP P61964 WDR5_HUMAN 23 334 DBREF 2H6Q C 1 9 PDB 2H6Q 2H6Q 1 9 DBREF 2H6Q D 1 9 PDB 2H6Q 2H6Q 1 9 SEQRES 1 A 312 ALA THR GLN SER LYS PRO THR PRO VAL LYS PRO ASN TYR SEQRES 2 A 312 ALA LEU LYS PHE THR LEU ALA GLY HIS THR LYS ALA VAL SEQRES 3 A 312 SER SER VAL LYS PHE SER PRO ASN GLY GLU TRP LEU ALA SEQRES 4 A 312 SER SER SER ALA ASP LYS LEU ILE LYS ILE TRP GLY ALA SEQRES 5 A 312 TYR ASP GLY LYS PHE GLU LYS THR ILE SER GLY HIS LYS SEQRES 6 A 312 LEU GLY ILE SER ASP VAL ALA TRP SER SER ASP SER ASN SEQRES 7 A 312 LEU LEU VAL SER ALA SER ASP ASP LYS THR LEU LYS ILE SEQRES 8 A 312 TRP ASP VAL SER SER GLY LYS CYS LEU LYS THR LEU LYS SEQRES 9 A 312 GLY HIS SER ASN TYR VAL PHE CYS CYS ASN PHE ASN PRO SEQRES 10 A 312 GLN SER ASN LEU ILE VAL SER GLY SER PHE ASP GLU SER SEQRES 11 A 312 VAL ARG ILE TRP ASP VAL LYS THR GLY LYS CYS LEU LYS SEQRES 12 A 312 THR LEU PRO ALA HIS SER ASP PRO VAL SER ALA VAL HIS SEQRES 13 A 312 PHE ASN ARG ASP GLY SER LEU ILE VAL SER SER SER TYR SEQRES 14 A 312 ASP GLY LEU CYS ARG ILE TRP ASP THR ALA SER GLY GLN SEQRES 15 A 312 CYS LEU LYS THR LEU ILE ASP ASP ASP ASN PRO PRO VAL SEQRES 16 A 312 SER PHE VAL LYS PHE SER PRO ASN GLY LYS TYR ILE LEU SEQRES 17 A 312 ALA ALA THR LEU ASP ASN THR LEU LYS LEU TRP ASP TYR SEQRES 18 A 312 SER LYS GLY LYS CYS LEU LYS THR TYR THR GLY HIS LYS SEQRES 19 A 312 ASN GLU LYS TYR CYS ILE PHE ALA ASN PHE SER VAL THR SEQRES 20 A 312 GLY GLY LYS TRP ILE VAL SER GLY SER GLU ASP ASN LEU SEQRES 21 A 312 VAL TYR ILE TRP ASN LEU GLN THR LYS GLU ILE VAL GLN SEQRES 22 A 312 LYS LEU GLN GLY HIS THR ASP VAL VAL ILE SER THR ALA SEQRES 23 A 312 CYS HIS PRO THR GLU ASN ILE ILE ALA SER ALA ALA LEU SEQRES 24 A 312 GLU ASN ASP LYS THR ILE LYS LEU TRP LYS SER ASP CYS SEQRES 1 B 312 ALA THR GLN SER LYS PRO THR PRO VAL LYS PRO ASN TYR SEQRES 2 B 312 ALA LEU LYS PHE THR LEU ALA GLY HIS THR LYS ALA VAL SEQRES 3 B 312 SER SER VAL LYS PHE SER PRO ASN GLY GLU TRP LEU ALA SEQRES 4 B 312 SER SER SER ALA ASP LYS LEU ILE LYS ILE TRP GLY ALA SEQRES 5 B 312 TYR ASP GLY LYS PHE GLU LYS THR ILE SER GLY HIS LYS SEQRES 6 B 312 LEU GLY ILE SER ASP VAL ALA TRP SER SER ASP SER ASN SEQRES 7 B 312 LEU LEU VAL SER ALA SER ASP ASP LYS THR LEU LYS ILE SEQRES 8 B 312 TRP ASP VAL SER SER GLY LYS CYS LEU LYS THR LEU LYS SEQRES 9 B 312 GLY HIS SER ASN TYR VAL PHE CYS CYS ASN PHE ASN PRO SEQRES 10 B 312 GLN SER ASN LEU ILE VAL SER GLY SER PHE ASP GLU SER SEQRES 11 B 312 VAL ARG ILE TRP ASP VAL LYS THR GLY LYS CYS LEU LYS SEQRES 12 B 312 THR LEU PRO ALA HIS SER ASP PRO VAL SER ALA VAL HIS SEQRES 13 B 312 PHE ASN ARG ASP GLY SER LEU ILE VAL SER SER SER TYR SEQRES 14 B 312 ASP GLY LEU CYS ARG ILE TRP ASP THR ALA SER GLY GLN SEQRES 15 B 312 CYS LEU LYS THR LEU ILE ASP ASP ASP ASN PRO PRO VAL SEQRES 16 B 312 SER PHE VAL LYS PHE SER PRO ASN GLY LYS TYR ILE LEU SEQRES 17 B 312 ALA ALA THR LEU ASP ASN THR LEU LYS LEU TRP ASP TYR SEQRES 18 B 312 SER LYS GLY LYS CYS LEU LYS THR TYR THR GLY HIS LYS SEQRES 19 B 312 ASN GLU LYS TYR CYS ILE PHE ALA ASN PHE SER VAL THR SEQRES 20 B 312 GLY GLY LYS TRP ILE VAL SER GLY SER GLU ASP ASN LEU SEQRES 21 B 312 VAL TYR ILE TRP ASN LEU GLN THR LYS GLU ILE VAL GLN SEQRES 22 B 312 LYS LEU GLN GLY HIS THR ASP VAL VAL ILE SER THR ALA SEQRES 23 B 312 CYS HIS PRO THR GLU ASN ILE ILE ALA SER ALA ALA LEU SEQRES 24 B 312 GLU ASN ASP LYS THR ILE LYS LEU TRP LYS SER ASP CYS SEQRES 1 C 9 ALA ARG THR M3L GLN THR ALA ARG LYS SEQRES 1 D 9 ALA ARG THR M3L GLN THR ALA ARG LYS MODRES 2H6Q M3L C 4 LYS N-TRIMETHYLLYSINE MODRES 2H6Q M3L D 4 LYS N-TRIMETHYLLYSINE HET M3L C 4 12 HET M3L D 4 12 HETNAM M3L N-TRIMETHYLLYSINE FORMUL 3 M3L 2(C9 H21 N2 O2 1+) FORMUL 5 HOH *498(H2 O) SHEET 1 A 4 ALA A 36 LEU A 41 0 SHEET 2 A 4 ILE A 327 LYS A 331 -1 O LEU A 329 N LYS A 38 SHEET 3 A 4 ILE A 315 ALA A 320 -1 N SER A 318 O LYS A 328 SHEET 4 A 4 VAL A 304 CYS A 309 -1 N ALA A 308 O ALA A 317 SHEET 1 B 4 VAL A 48 PHE A 53 0 SHEET 2 B 4 TRP A 59 SER A 64 -1 O SER A 63 N SER A 49 SHEET 3 B 4 LEU A 68 GLY A 73 -1 O TRP A 72 N LEU A 60 SHEET 4 B 4 PHE A 79 SER A 84 -1 O ILE A 83 N ILE A 69 SHEET 1 C 4 ILE A 90 TRP A 95 0 SHEET 2 C 4 LEU A 101 SER A 106 -1 O VAL A 103 N ALA A 94 SHEET 3 C 4 THR A 110 ASP A 115 -1 O TRP A 114 N LEU A 102 SHEET 4 C 4 CYS A 121 LYS A 126 -1 O LEU A 125 N LEU A 111 SHEET 1 D 4 VAL A 132 PHE A 137 0 SHEET 2 D 4 LEU A 143 SER A 148 -1 O GLY A 147 N PHE A 133 SHEET 3 D 4 VAL A 153 ASP A 157 -1 O TRP A 156 N ILE A 144 SHEET 4 D 4 CYS A 163 LEU A 167 -1 O LEU A 167 N VAL A 153 SHEET 1 E 4 VAL A 174 PHE A 179 0 SHEET 2 E 4 LEU A 185 SER A 190 -1 O VAL A 187 N HIS A 178 SHEET 3 E 4 CYS A 195 ASP A 199 -1 O TRP A 198 N ILE A 186 SHEET 4 E 4 CYS A 205 LEU A 209 -1 O LEU A 209 N CYS A 195 SHEET 1 F 4 VAL A 217 PHE A 222 0 SHEET 2 F 4 TYR A 228 THR A 233 -1 O ALA A 232 N PHE A 219 SHEET 3 F 4 THR A 237 ASP A 242 -1 O TRP A 241 N ILE A 229 SHEET 4 F 4 LYS A 247 THR A 253 -1 O TYR A 252 N LEU A 238 SHEET 1 G 4 ALA A 264 SER A 267 0 SHEET 2 G 4 TRP A 273 SER A 276 -1 O VAL A 275 N ASN A 265 SHEET 3 G 4 VAL A 283 ASN A 287 -1 O TYR A 284 N SER A 276 SHEET 4 G 4 ILE A 293 LEU A 297 -1 O VAL A 294 N ILE A 285 SHEET 1 H 4 ALA B 36 LEU B 41 0 SHEET 2 H 4 ILE B 327 LYS B 331 -1 O ILE B 327 N LEU B 41 SHEET 3 H 4 ILE B 315 ALA B 320 -1 N ILE B 316 O TRP B 330 SHEET 4 H 4 VAL B 304 CYS B 309 -1 N ALA B 308 O ALA B 317 SHEET 1 I 4 VAL B 48 PHE B 53 0 SHEET 2 I 4 TRP B 59 SER B 64 -1 O ALA B 61 N LYS B 52 SHEET 3 I 4 ILE B 69 GLY B 73 -1 O LYS B 70 N SER B 62 SHEET 4 I 4 PHE B 79 ILE B 83 -1 O ILE B 83 N ILE B 69 SHEET 1 J 4 ILE B 90 TRP B 95 0 SHEET 2 J 4 LEU B 101 SER B 106 -1 O ALA B 105 N SER B 91 SHEET 3 J 4 THR B 110 ASP B 115 -1 O TRP B 114 N LEU B 102 SHEET 4 J 4 CYS B 121 LYS B 126 -1 O LEU B 125 N LEU B 111 SHEET 1 K 4 VAL B 132 PHE B 137 0 SHEET 2 K 4 LEU B 143 SER B 148 -1 O GLY B 147 N PHE B 133 SHEET 3 K 4 VAL B 153 ASP B 157 -1 O TRP B 156 N ILE B 144 SHEET 4 K 4 CYS B 163 LEU B 167 -1 O LEU B 167 N VAL B 153 SHEET 1 L 4 VAL B 174 PHE B 179 0 SHEET 2 L 4 LEU B 185 SER B 190 -1 O VAL B 187 N HIS B 178 SHEET 3 L 4 CYS B 195 ASP B 199 -1 O TRP B 198 N ILE B 186 SHEET 4 L 4 CYS B 205 LEU B 209 -1 O LEU B 209 N CYS B 195 SHEET 1 M 4 VAL B 217 PHE B 222 0 SHEET 2 M 4 ILE B 229 THR B 233 -1 O LEU B 230 N LYS B 221 SHEET 3 M 4 THR B 237 ASP B 242 -1 O TRP B 241 N ILE B 229 SHEET 4 M 4 LYS B 247 THR B 253 -1 O LYS B 247 N ASP B 242 SHEET 1 N 4 ALA B 264 SER B 267 0 SHEET 2 N 4 TRP B 273 SER B 276 -1 O TRP B 273 N SER B 267 SHEET 3 N 4 VAL B 283 ASN B 287 -1 O TYR B 284 N SER B 276 SHEET 4 N 4 ILE B 293 LEU B 297 -1 O VAL B 294 N ILE B 285 LINK C THR C 3 N M3L C 4 1555 1555 1.33 LINK C M3L C 4 N GLN C 5 1555 1555 1.33 LINK C THR D 3 N M3L D 4 1555 1555 1.32 LINK C M3L D 4 N GLN D 5 1555 1555 1.33 CRYST1 134.257 46.336 111.405 90.00 116.72 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007448 0.000000 0.003749 0.00000 SCALE2 0.000000 0.021581 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010049 0.00000