HEADER HYDROLASE 01-JUN-06 2H6U TITLE CRYSTAL STRUCTURE OF 5-HYDROXYISOURATE HYDROLASE (FORMERLY KNOWN AS TITLE 2 TRP, TRANSTHYRETIN RELATED PROTEIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5-HYDROXYISOURATE HYDROLASE (FORMERLY KNOWN AS TRP, COMPND 3 TRANSTHYRETIN RELATED PROTEIN); COMPND 4 CHAIN: A, B, C, D, E, F, G, H; COMPND 5 EC: 3.5.2.17; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: GENEID:558664; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS 5-HYDROXYISOURATE HYDROLASE, TRP, URIC ACID DEGRADATION, ALLANTOIN, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.ZANOTTI,L.CENDRON,C.FOLLI,I.RAMAZZINA,R.PERCUDANI,R.BERNI REVDAT 5 30-AUG-23 2H6U 1 REMARK REVDAT 4 20-OCT-21 2H6U 1 SEQADV REVDAT 3 13-JUL-11 2H6U 1 VERSN REVDAT 2 06-MAY-08 2H6U 1 COMPND VERSN REVDAT 1 31-OCT-06 2H6U 0 JRNL AUTH G.ZANOTTI,L.CENDRON,I.RAMAZZINA,C.FOLLI,R.PERCUDANI,R.BERNI JRNL TITL STRUCTURE OF ZEBRA FISH HIUASE: INSIGHTS INTO EVOLUTION OF JRNL TITL 2 AN ENZYME TO A HORMONE TRANSPORTER. JRNL REF J.MOL.BIOL. V. 363 1 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16952372 JRNL DOI 10.1016/J.JMB.2006.07.079 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.RAMAZZINA,C.FOLLI,A.SECCHI,R.BERNI,R.PERCUDANI REMARK 1 TITL COMPLETING THE URIC ACID DEGRADATION PATHWAY THROUGH REMARK 1 TITL 2 PHYLOGENETIC COMPARISON OF WHOLE GENOMES REMARK 1 REF NAT.CHEM.BIOL. V. 2 144 2006 REMARK 1 REFN ISSN 1552-4450 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 98390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5163 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5716 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 298 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7208 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 598 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : 0.19000 REMARK 3 B33 (A**2) : 0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.553 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7408 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10120 ; 1.206 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 904 ; 5.457 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 312 ;32.397 ;22.821 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1136 ;12.327 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;26.247 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1152 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5632 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3214 ; 0.209 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5077 ; 0.323 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 1019 ; 0.189 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 38 ; 0.276 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.145 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4686 ; 1.348 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7400 ; 1.998 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3194 ; 1.449 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2720 ; 2.092 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D E F G H REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 6 A 119 6 REMARK 3 1 B 6 B 119 6 REMARK 3 1 C 6 C 119 6 REMARK 3 1 D 6 D 119 6 REMARK 3 1 E 6 E 119 6 REMARK 3 1 F 6 F 119 6 REMARK 3 1 G 6 G 119 6 REMARK 3 1 H 6 H 119 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 901 ; .24 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 901 ; .30 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 C (A): 901 ; .25 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 D (A): 901 ; .22 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 E (A): 901 ; .26 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 F (A): 901 ; .43 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 G (A): 901 ; .25 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 H (A): 901 ; .29 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 901 ; 4.04 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 901 ; 3.91 ; 10.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 901 ; 2.40 ; 10.00 REMARK 3 LOOSE THERMAL 1 D (A**2): 901 ; 2.93 ; 10.00 REMARK 3 LOOSE THERMAL 1 E (A**2): 901 ; 3.45 ; 10.00 REMARK 3 LOOSE THERMAL 1 F (A**2): 901 ; 3.50 ; 10.00 REMARK 3 LOOSE THERMAL 1 G (A**2): 901 ; 3.51 ; 10.00 REMARK 3 LOOSE THERMAL 1 H (A**2): 901 ; 2.49 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2H6U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038002. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103601 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 118.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.23600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2H1X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 10000, 0.1 M HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.16200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 118.69650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.36850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 118.69650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.16200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.36850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A HOMO-TETRAMER. TWO OF SUCH REMARK 300 TETRAMERS ARE PRESENT IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 LEU A 5 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 THR B 4 REMARK 465 LEU B 5 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 ALA C 3 REMARK 465 THR C 4 REMARK 465 LEU C 5 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 ALA D 3 REMARK 465 THR D 4 REMARK 465 LEU D 5 REMARK 465 MET E 1 REMARK 465 ALA E 2 REMARK 465 ALA E 3 REMARK 465 THR E 4 REMARK 465 LEU E 5 REMARK 465 MET F 1 REMARK 465 ALA F 2 REMARK 465 ALA F 3 REMARK 465 THR F 4 REMARK 465 LEU F 5 REMARK 465 MET G 1 REMARK 465 ALA G 2 REMARK 465 ALA G 3 REMARK 465 THR G 4 REMARK 465 LEU G 5 REMARK 465 MET H 1 REMARK 465 ALA H 2 REMARK 465 ALA H 3 REMARK 465 THR H 4 REMARK 465 LEU H 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP H 33 O SER H 36 1.87 REMARK 500 NZ LYS H 59 O THR H 98 1.99 REMARK 500 N LEU A 6 O HOH A 751 2.00 REMARK 500 OD1 ASP H 78 O HOH H 585 2.03 REMARK 500 O HOH A 127 O HOH A 767 2.08 REMARK 500 ND2 ASN B 61 O HOH B 443 2.13 REMARK 500 O ASP G 33 O SER G 36 2.13 REMARK 500 O ASP E 33 O SER E 36 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 36 -142.16 -70.81 REMARK 500 SER A 37 24.91 -155.16 REMARK 500 HIS C 12 117.92 -163.15 REMARK 500 VAL C 35 -65.37 -95.67 REMARK 500 SER D 37 33.49 -91.53 REMARK 500 VAL E 35 -66.15 -105.07 REMARK 500 HIS G 12 117.84 -170.35 REMARK 500 ASN G 48 -166.67 -77.52 REMARK 500 SER H 37 39.76 -91.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2H1X RELATED DB: PDB REMARK 900 5-HYDROXYISOURATE HYDROLASE, MONOCLINIC FORM REMARK 900 RELATED ID: 1F41 RELATED DB: PDB REMARK 900 TRANSTHYRETIN, HUMAN DBREF 2H6U A 1 119 UNP Q0P422 Q0P422_BRARE 20 138 DBREF 2H6U B 1 119 UNP Q0P422 Q0P422_BRARE 20 138 DBREF 2H6U C 1 119 UNP Q0P422 Q0P422_BRARE 20 138 DBREF 2H6U D 1 119 UNP Q0P422 Q0P422_BRARE 20 138 DBREF 2H6U E 1 119 UNP Q0P422 Q0P422_BRARE 20 138 DBREF 2H6U F 1 119 UNP Q0P422 Q0P422_BRARE 20 138 DBREF 2H6U G 1 119 UNP Q0P422 Q0P422_BRARE 20 138 DBREF 2H6U H 1 119 UNP Q0P422 Q0P422_BRARE 20 138 SEQADV 2H6U ALA A 2 UNP Q0P422 SER 21 ENGINEERED MUTATION SEQADV 2H6U LEU A 6 UNP Q0P422 PRO 25 ENGINEERED MUTATION SEQADV 2H6U ALA B 2 UNP Q0P422 SER 21 ENGINEERED MUTATION SEQADV 2H6U LEU B 6 UNP Q0P422 PRO 25 ENGINEERED MUTATION SEQADV 2H6U ALA C 2 UNP Q0P422 SER 21 ENGINEERED MUTATION SEQADV 2H6U LEU C 6 UNP Q0P422 PRO 25 ENGINEERED MUTATION SEQADV 2H6U ALA D 2 UNP Q0P422 SER 21 ENGINEERED MUTATION SEQADV 2H6U LEU D 6 UNP Q0P422 PRO 25 ENGINEERED MUTATION SEQADV 2H6U ALA E 2 UNP Q0P422 SER 21 ENGINEERED MUTATION SEQADV 2H6U LEU E 6 UNP Q0P422 PRO 25 ENGINEERED MUTATION SEQADV 2H6U ALA F 2 UNP Q0P422 SER 21 ENGINEERED MUTATION SEQADV 2H6U LEU F 6 UNP Q0P422 PRO 25 ENGINEERED MUTATION SEQADV 2H6U ALA G 2 UNP Q0P422 SER 21 ENGINEERED MUTATION SEQADV 2H6U LEU G 6 UNP Q0P422 PRO 25 ENGINEERED MUTATION SEQADV 2H6U ALA H 2 UNP Q0P422 SER 21 ENGINEERED MUTATION SEQADV 2H6U LEU H 6 UNP Q0P422 PRO 25 ENGINEERED MUTATION SEQRES 1 A 119 MET ALA ALA THR LEU LEU SER PRO LEU SER THR HIS VAL SEQRES 2 A 119 LEU ASN ILE ALA GLN GLY VAL PRO GLY ALA ASN MET THR SEQRES 3 A 119 ILE VAL LEU HIS ARG LEU ASP PRO VAL SER SER ALA TRP SEQRES 4 A 119 ASN ILE LEU THR THR GLY ILE THR ASN ASP ASP GLY ARG SEQRES 5 A 119 CYS PRO GLY LEU ILE THR LYS GLU ASN PHE ILE ALA GLY SEQRES 6 A 119 VAL TYR LYS MET ARG PHE GLU THR GLY LYS TYR TRP ASP SEQRES 7 A 119 ALA LEU GLY GLU THR CYS PHE TYR PRO TYR VAL GLU ILE SEQRES 8 A 119 VAL PHE THR ILE THR ASN THR SER GLN HIS TYR HIS VAL SEQRES 9 A 119 PRO LEU LEU LEU SER ARG PHE SER TYR SER THR TYR ARG SEQRES 10 A 119 GLY SER SEQRES 1 B 119 MET ALA ALA THR LEU LEU SER PRO LEU SER THR HIS VAL SEQRES 2 B 119 LEU ASN ILE ALA GLN GLY VAL PRO GLY ALA ASN MET THR SEQRES 3 B 119 ILE VAL LEU HIS ARG LEU ASP PRO VAL SER SER ALA TRP SEQRES 4 B 119 ASN ILE LEU THR THR GLY ILE THR ASN ASP ASP GLY ARG SEQRES 5 B 119 CYS PRO GLY LEU ILE THR LYS GLU ASN PHE ILE ALA GLY SEQRES 6 B 119 VAL TYR LYS MET ARG PHE GLU THR GLY LYS TYR TRP ASP SEQRES 7 B 119 ALA LEU GLY GLU THR CYS PHE TYR PRO TYR VAL GLU ILE SEQRES 8 B 119 VAL PHE THR ILE THR ASN THR SER GLN HIS TYR HIS VAL SEQRES 9 B 119 PRO LEU LEU LEU SER ARG PHE SER TYR SER THR TYR ARG SEQRES 10 B 119 GLY SER SEQRES 1 C 119 MET ALA ALA THR LEU LEU SER PRO LEU SER THR HIS VAL SEQRES 2 C 119 LEU ASN ILE ALA GLN GLY VAL PRO GLY ALA ASN MET THR SEQRES 3 C 119 ILE VAL LEU HIS ARG LEU ASP PRO VAL SER SER ALA TRP SEQRES 4 C 119 ASN ILE LEU THR THR GLY ILE THR ASN ASP ASP GLY ARG SEQRES 5 C 119 CYS PRO GLY LEU ILE THR LYS GLU ASN PHE ILE ALA GLY SEQRES 6 C 119 VAL TYR LYS MET ARG PHE GLU THR GLY LYS TYR TRP ASP SEQRES 7 C 119 ALA LEU GLY GLU THR CYS PHE TYR PRO TYR VAL GLU ILE SEQRES 8 C 119 VAL PHE THR ILE THR ASN THR SER GLN HIS TYR HIS VAL SEQRES 9 C 119 PRO LEU LEU LEU SER ARG PHE SER TYR SER THR TYR ARG SEQRES 10 C 119 GLY SER SEQRES 1 D 119 MET ALA ALA THR LEU LEU SER PRO LEU SER THR HIS VAL SEQRES 2 D 119 LEU ASN ILE ALA GLN GLY VAL PRO GLY ALA ASN MET THR SEQRES 3 D 119 ILE VAL LEU HIS ARG LEU ASP PRO VAL SER SER ALA TRP SEQRES 4 D 119 ASN ILE LEU THR THR GLY ILE THR ASN ASP ASP GLY ARG SEQRES 5 D 119 CYS PRO GLY LEU ILE THR LYS GLU ASN PHE ILE ALA GLY SEQRES 6 D 119 VAL TYR LYS MET ARG PHE GLU THR GLY LYS TYR TRP ASP SEQRES 7 D 119 ALA LEU GLY GLU THR CYS PHE TYR PRO TYR VAL GLU ILE SEQRES 8 D 119 VAL PHE THR ILE THR ASN THR SER GLN HIS TYR HIS VAL SEQRES 9 D 119 PRO LEU LEU LEU SER ARG PHE SER TYR SER THR TYR ARG SEQRES 10 D 119 GLY SER SEQRES 1 E 119 MET ALA ALA THR LEU LEU SER PRO LEU SER THR HIS VAL SEQRES 2 E 119 LEU ASN ILE ALA GLN GLY VAL PRO GLY ALA ASN MET THR SEQRES 3 E 119 ILE VAL LEU HIS ARG LEU ASP PRO VAL SER SER ALA TRP SEQRES 4 E 119 ASN ILE LEU THR THR GLY ILE THR ASN ASP ASP GLY ARG SEQRES 5 E 119 CYS PRO GLY LEU ILE THR LYS GLU ASN PHE ILE ALA GLY SEQRES 6 E 119 VAL TYR LYS MET ARG PHE GLU THR GLY LYS TYR TRP ASP SEQRES 7 E 119 ALA LEU GLY GLU THR CYS PHE TYR PRO TYR VAL GLU ILE SEQRES 8 E 119 VAL PHE THR ILE THR ASN THR SER GLN HIS TYR HIS VAL SEQRES 9 E 119 PRO LEU LEU LEU SER ARG PHE SER TYR SER THR TYR ARG SEQRES 10 E 119 GLY SER SEQRES 1 F 119 MET ALA ALA THR LEU LEU SER PRO LEU SER THR HIS VAL SEQRES 2 F 119 LEU ASN ILE ALA GLN GLY VAL PRO GLY ALA ASN MET THR SEQRES 3 F 119 ILE VAL LEU HIS ARG LEU ASP PRO VAL SER SER ALA TRP SEQRES 4 F 119 ASN ILE LEU THR THR GLY ILE THR ASN ASP ASP GLY ARG SEQRES 5 F 119 CYS PRO GLY LEU ILE THR LYS GLU ASN PHE ILE ALA GLY SEQRES 6 F 119 VAL TYR LYS MET ARG PHE GLU THR GLY LYS TYR TRP ASP SEQRES 7 F 119 ALA LEU GLY GLU THR CYS PHE TYR PRO TYR VAL GLU ILE SEQRES 8 F 119 VAL PHE THR ILE THR ASN THR SER GLN HIS TYR HIS VAL SEQRES 9 F 119 PRO LEU LEU LEU SER ARG PHE SER TYR SER THR TYR ARG SEQRES 10 F 119 GLY SER SEQRES 1 G 119 MET ALA ALA THR LEU LEU SER PRO LEU SER THR HIS VAL SEQRES 2 G 119 LEU ASN ILE ALA GLN GLY VAL PRO GLY ALA ASN MET THR SEQRES 3 G 119 ILE VAL LEU HIS ARG LEU ASP PRO VAL SER SER ALA TRP SEQRES 4 G 119 ASN ILE LEU THR THR GLY ILE THR ASN ASP ASP GLY ARG SEQRES 5 G 119 CYS PRO GLY LEU ILE THR LYS GLU ASN PHE ILE ALA GLY SEQRES 6 G 119 VAL TYR LYS MET ARG PHE GLU THR GLY LYS TYR TRP ASP SEQRES 7 G 119 ALA LEU GLY GLU THR CYS PHE TYR PRO TYR VAL GLU ILE SEQRES 8 G 119 VAL PHE THR ILE THR ASN THR SER GLN HIS TYR HIS VAL SEQRES 9 G 119 PRO LEU LEU LEU SER ARG PHE SER TYR SER THR TYR ARG SEQRES 10 G 119 GLY SER SEQRES 1 H 119 MET ALA ALA THR LEU LEU SER PRO LEU SER THR HIS VAL SEQRES 2 H 119 LEU ASN ILE ALA GLN GLY VAL PRO GLY ALA ASN MET THR SEQRES 3 H 119 ILE VAL LEU HIS ARG LEU ASP PRO VAL SER SER ALA TRP SEQRES 4 H 119 ASN ILE LEU THR THR GLY ILE THR ASN ASP ASP GLY ARG SEQRES 5 H 119 CYS PRO GLY LEU ILE THR LYS GLU ASN PHE ILE ALA GLY SEQRES 6 H 119 VAL TYR LYS MET ARG PHE GLU THR GLY LYS TYR TRP ASP SEQRES 7 H 119 ALA LEU GLY GLU THR CYS PHE TYR PRO TYR VAL GLU ILE SEQRES 8 H 119 VAL PHE THR ILE THR ASN THR SER GLN HIS TYR HIS VAL SEQRES 9 H 119 PRO LEU LEU LEU SER ARG PHE SER TYR SER THR TYR ARG SEQRES 10 H 119 GLY SER FORMUL 9 HOH *598(H2 O) HELIX 1 1 GLU A 72 LEU A 80 1 9 HELIX 2 2 GLU B 72 ALA B 79 1 8 HELIX 3 3 GLU C 72 LEU C 80 1 9 HELIX 4 4 THR D 58 PHE D 62 5 5 HELIX 5 5 GLU D 72 LEU D 80 1 9 HELIX 6 6 GLU E 72 LEU E 80 1 9 HELIX 7 7 GLU F 72 LEU F 80 1 9 HELIX 8 8 GLU G 72 LEU G 80 1 9 HELIX 9 9 GLU H 72 LEU H 80 1 9 SHEET 1 A 2 LEU A 9 SER A 10 0 SHEET 2 A 2 TYR A 102 HIS A 103 1 O TYR A 102 N SER A 10 SHEET 1 B 8 VAL A 20 PRO A 21 0 SHEET 2 B 8 VAL A 13 ASN A 15 -1 N ASN A 15 O VAL A 20 SHEET 3 B 8 LEU A 106 LEU A 108 1 O LEU A 108 N LEU A 14 SHEET 4 B 8 SER A 112 TYR A 116 -1 O SER A 114 N LEU A 107 SHEET 5 B 8 SER B 112 TYR B 116 -1 O TYR B 113 N THR A 115 SHEET 6 B 8 LEU B 106 LEU B 108 -1 N LEU B 107 O SER B 114 SHEET 7 B 8 VAL B 13 ASN B 15 1 N LEU B 14 O LEU B 108 SHEET 8 B 8 VAL B 20 PRO B 21 -1 O VAL B 20 N ASN B 15 SHEET 1 C 4 TRP A 39 ILE A 46 0 SHEET 2 C 4 THR A 26 LEU A 32 -1 N LEU A 29 O LEU A 42 SHEET 3 C 4 GLY A 65 PHE A 71 -1 O ARG A 70 N VAL A 28 SHEET 4 C 4 VAL A 89 ILE A 95 -1 O VAL A 89 N PHE A 71 SHEET 1 D 2 LEU B 9 SER B 10 0 SHEET 2 D 2 TYR B 102 HIS B 103 1 O TYR B 102 N SER B 10 SHEET 1 E 4 TRP B 39 ILE B 46 0 SHEET 2 E 4 THR B 26 LEU B 32 -1 N LEU B 29 O THR B 43 SHEET 3 E 4 GLY B 65 PHE B 71 -1 O VAL B 66 N LEU B 32 SHEET 4 E 4 VAL B 89 ILE B 95 -1 O VAL B 89 N PHE B 71 SHEET 1 F 2 LEU C 9 SER C 10 0 SHEET 2 F 2 TYR C 102 HIS C 103 1 O TYR C 102 N SER C 10 SHEET 1 G 8 VAL C 20 PRO C 21 0 SHEET 2 G 8 VAL C 13 ASN C 15 -1 N ASN C 15 O VAL C 20 SHEET 3 G 8 LEU C 106 SER C 109 1 O LEU C 108 N LEU C 14 SHEET 4 G 8 SER C 112 TYR C 116 -1 O SER C 114 N LEU C 107 SHEET 5 G 8 SER D 112 TYR D 116 -1 O TYR D 113 N THR C 115 SHEET 6 G 8 LEU D 106 SER D 109 -1 N LEU D 107 O SER D 114 SHEET 7 G 8 VAL D 13 ASN D 15 1 N LEU D 14 O LEU D 108 SHEET 8 G 8 VAL D 20 PRO D 21 -1 O VAL D 20 N ASN D 15 SHEET 1 H 4 TRP C 39 ILE C 46 0 SHEET 2 H 4 THR C 26 LEU C 32 -1 N LEU C 29 O LEU C 42 SHEET 3 H 4 GLY C 65 PHE C 71 -1 O VAL C 66 N LEU C 32 SHEET 4 H 4 VAL C 89 ILE C 95 -1 O ILE C 95 N GLY C 65 SHEET 1 I 2 LEU D 9 SER D 10 0 SHEET 2 I 2 TYR D 102 HIS D 103 1 O TYR D 102 N SER D 10 SHEET 1 J 4 TRP D 39 ILE D 46 0 SHEET 2 J 4 THR D 26 LEU D 32 -1 N ARG D 31 O ASN D 40 SHEET 3 J 4 GLY D 65 PHE D 71 -1 O VAL D 66 N LEU D 32 SHEET 4 J 4 VAL D 89 ILE D 95 -1 O VAL D 89 N PHE D 71 SHEET 1 K 2 LEU E 9 SER E 10 0 SHEET 2 K 2 TYR E 102 HIS E 103 1 O TYR E 102 N SER E 10 SHEET 1 L 8 VAL E 20 PRO E 21 0 SHEET 2 L 8 VAL E 13 ASN E 15 -1 N ASN E 15 O VAL E 20 SHEET 3 L 8 LEU E 106 SER E 109 1 O LEU E 108 N LEU E 14 SHEET 4 L 8 SER E 112 TYR E 116 -1 O SER E 114 N LEU E 107 SHEET 5 L 8 SER F 112 TYR F 116 -1 O THR F 115 N TYR E 113 SHEET 6 L 8 LEU F 106 SER F 109 -1 N SER F 109 O SER F 112 SHEET 7 L 8 VAL F 13 ASN F 15 1 N LEU F 14 O LEU F 108 SHEET 8 L 8 VAL F 20 PRO F 21 -1 O VAL F 20 N ASN F 15 SHEET 1 M 4 TRP E 39 ILE E 46 0 SHEET 2 M 4 THR E 26 LEU E 32 -1 N LEU E 29 O LEU E 42 SHEET 3 M 4 GLY E 65 PHE E 71 -1 O VAL E 66 N LEU E 32 SHEET 4 M 4 VAL E 89 ILE E 95 -1 O VAL E 89 N PHE E 71 SHEET 1 N 2 LEU F 9 SER F 10 0 SHEET 2 N 2 TYR F 102 HIS F 103 1 O TYR F 102 N SER F 10 SHEET 1 O 4 TRP F 39 ILE F 46 0 SHEET 2 O 4 THR F 26 LEU F 32 -1 N ILE F 27 O GLY F 45 SHEET 3 O 4 GLY F 65 PHE F 71 -1 O VAL F 66 N LEU F 32 SHEET 4 O 4 VAL F 89 ILE F 95 -1 O VAL F 89 N PHE F 71 SHEET 1 P 2 LEU G 9 SER G 10 0 SHEET 2 P 2 TYR G 102 HIS G 103 1 O TYR G 102 N SER G 10 SHEET 1 Q 8 VAL G 20 PRO G 21 0 SHEET 2 Q 8 VAL G 13 ASN G 15 -1 N ASN G 15 O VAL G 20 SHEET 3 Q 8 LEU G 106 LEU G 108 1 O LEU G 108 N LEU G 14 SHEET 4 Q 8 SER G 112 TYR G 116 -1 O SER G 114 N LEU G 107 SHEET 5 Q 8 SER H 112 TYR H 116 -1 O THR H 115 N TYR G 113 SHEET 6 Q 8 LEU H 106 SER H 109 -1 N LEU H 107 O SER H 114 SHEET 7 Q 8 VAL H 13 ASN H 15 1 N LEU H 14 O LEU H 108 SHEET 8 Q 8 VAL H 20 PRO H 21 -1 O VAL H 20 N ASN H 15 SHEET 1 R 4 TRP G 39 ILE G 46 0 SHEET 2 R 4 THR G 26 LEU G 32 -1 N LEU G 29 O LEU G 42 SHEET 3 R 4 GLY G 65 PHE G 71 -1 O ARG G 70 N VAL G 28 SHEET 4 R 4 VAL G 89 ILE G 95 -1 O ILE G 95 N GLY G 65 SHEET 1 S 2 LEU H 9 SER H 10 0 SHEET 2 S 2 TYR H 102 HIS H 103 1 O TYR H 102 N SER H 10 SHEET 1 T 4 TRP H 39 ILE H 46 0 SHEET 2 T 4 THR H 26 LEU H 32 -1 N ILE H 27 O GLY H 45 SHEET 3 T 4 GLY H 65 PHE H 71 -1 O VAL H 66 N LEU H 32 SHEET 4 T 4 VAL H 89 ILE H 95 -1 O VAL H 89 N PHE H 71 CRYST1 64.324 66.737 237.393 90.00 90.00 90.00 P 21 21 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015546 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014984 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004212 0.00000