HEADER HORMONE/GROWTH FACTOR 01-JUN-06 2H6W OBSLTE 28-APR-09 2H6W 3GWS TITLE THYROID HORMONE RECEPTOR BOUND TO T3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYROID HORMONE RECEPTOR BETA-1; COMPND 3 CHAIN: X; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: THRB, ERBA2, NR1A2, THR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21[DE3]; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: T7 KEYWDS THYROID, TR, NUCLEAR RECEPTOR, T3, HORMONE/GROWTH FACTOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.S.NASCIMENTO,S.M.G.DIAS,F.M.NUNES,R.APARICIO,L.BLEICHER, AUTHOR 2 A.L.B.AMBROSIO,A.C.M.FIGUEIRA,M.A.M.SANTOS,M.O.NETO, AUTHOR 3 H.FISCHER,H.F.M TOGASHI,A.F.CRAIEVICH,R.C.GARRAT,J.D.BAXTER, AUTHOR 4 P.WEBB,I.POLIKARPOV REVDAT 3 28-APR-09 2H6W 1 OBSLTE REVDAT 2 24-FEB-09 2H6W 1 VERSN REVDAT 1 25-JUL-06 2H6W 0 JRNL AUTH A.S.NASCIMENTO,S.M.G.DIAS,F.M.NUNES,R.APARICIO, JRNL AUTH 2 A.L.B.AMBROSIO,L.BLEICHER,A.C.M.FIGUEIRA, JRNL AUTH 3 M.A.M.SANTOS,M.O.NETO,H.FISCHER,M.TOGASHI, JRNL AUTH 4 A.F.CRAIEVICH,R.C.GARRATT,J.D.BAXTER,P.WEBB, JRNL AUTH 5 I.POLIKARPOV JRNL TITL STRUCTURAL REARRANGEMENTS IN THE THYROID HORMONE JRNL TITL 2 RECEPTOR HINGE DOMAIN AND THEIR PUTATIVE ROLE IN JRNL TITL 3 THE RECEPTOR FUNCTION. JRNL REF J.MOL.BIOL. V. 360 586 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16781732 JRNL DOI 10.1016/J.JMB.2006.05.008 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 15596 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 832 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1013 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1988 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.254 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.211 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.332 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2060 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2797 ; 2.631 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 253 ;13.943 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;35.584 ;24.111 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 354 ;17.756 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;22.759 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 313 ; 0.175 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1545 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 922 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1366 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 67 ; 0.205 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 36 ; 0.323 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.175 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1270 ; 1.121 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2022 ; 1.908 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 876 ; 3.468 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 772 ; 5.145 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 202 X 460 REMARK 3 RESIDUE RANGE : X 500 X 500 REMARK 3 ORIGIN FOR THE GROUP (A): 23.6841 9.7274 -1.5666 REMARK 3 T TENSOR REMARK 3 T11: -0.1237 T22: -0.1324 REMARK 3 T33: -0.0998 T12: 0.0355 REMARK 3 T13: -0.0057 T23: 0.0341 REMARK 3 L TENSOR REMARK 3 L11: 1.6306 L22: 0.6711 REMARK 3 L33: 0.7739 L12: -0.2220 REMARK 3 L13: 0.2304 L23: 0.6579 REMARK 3 S TENSOR REMARK 3 S11: -0.1852 S12: -0.2667 S13: -0.1569 REMARK 3 S21: 0.1557 S22: 0.0645 S23: 0.0812 REMARK 3 S31: 0.2131 S32: 0.1501 S33: 0.1207 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2H6W COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-06. REMARK 100 THE RCSB ID CODE IS RCSB038004. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5478 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16466 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 16.100 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.66200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM CACODYLATE, 1.4M REMARK 280 SODIUM ACETATE, PH 6.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.70633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.41267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 87.41267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.70633 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN X 252 REMARK 465 ALA X 253 REMARK 465 PRO X 254 REMARK 465 ILE X 255 REMARK 465 VAL X 256 REMARK 465 ASN X 257 REMARK 465 ALA X 258 REMARK 465 PRO X 259 REMARK 465 GLU X 260 REMARK 465 GLY X 261 REMARK 465 GLY X 262 REMARK 465 LYS X 263 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS X 206 CG CD CE NZ REMARK 470 LYS X 242 CG CD CE NZ REMARK 470 LYS X 274 CG CD CE NZ REMARK 470 GLU X 445 CG CD OE1 OE2 REMARK 470 GLU X 449 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER X 380 NH2 ARG X 429 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG X 282 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG X 320 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG X 320 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP X 366 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG X 383 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG X 383 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG X 383 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG X 429 CG - CD - NE ANGL. DEV. = -15.3 DEGREES REMARK 500 ARG X 429 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG X 429 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS X 394 -59.17 110.06 REMARK 500 HIS X 413 66.54 -100.59 REMARK 500 ARG X 429 -80.17 3.54 REMARK 500 GLU X 445 -94.13 -78.41 REMARK 500 CYS X 446 160.49 -47.12 REMARK 500 PRO X 447 -116.62 -70.41 REMARK 500 THR X 448 -32.36 -144.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE X 222 LYS X 223 -147.37 REMARK 500 ILE X 250 GLY X 251 -139.02 REMARK 500 LEU X 428 ARG X 429 120.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ARG X 429 10.6 L L OUTSIDE RANGE REMARK 500 GLU X 460 24.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T3 X 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2H77 RELATED DB: PDB REMARK 900 RELATED ID: 2H79 RELATED DB: PDB DBREF 2H6W X 202 460 UNP P10828 THB1_HUMAN 202 460 SEQADV 2H6W CAS X 294 UNP P10828 CYS 294 MODIFIED RESIDUE SEQADV 2H6W CAS X 298 UNP P10828 CYS 298 MODIFIED RESIDUE SEQADV 2H6W CAS X 388 UNP P10828 CYS 388 MODIFIED RESIDUE SEQADV 2H6W CAS X 434 UNP P10828 CYS 434 MODIFIED RESIDUE SEQRES 1 X 259 GLU GLU LEU GLN LYS SER ILE GLY HIS LYS PRO GLU PRO SEQRES 2 X 259 THR ASP GLU GLU TRP GLU LEU ILE LYS THR VAL THR GLU SEQRES 3 X 259 ALA HIS VAL ALA THR ASN ALA GLN GLY SER HIS TRP LYS SEQRES 4 X 259 GLN LYS ARG LYS PHE LEU PRO GLU ASP ILE GLY GLN ALA SEQRES 5 X 259 PRO ILE VAL ASN ALA PRO GLU GLY GLY LYS VAL ASP LEU SEQRES 6 X 259 GLU ALA PHE SER HIS PHE THR LYS ILE ILE THR PRO ALA SEQRES 7 X 259 ILE THR ARG VAL VAL ASP PHE ALA LYS LYS LEU PRO MET SEQRES 8 X 259 PHE CAS GLU LEU PRO CAS GLU ASP GLN ILE ILE LEU LEU SEQRES 9 X 259 LYS GLY CYS CYS MET GLU ILE MET SER LEU ARG ALA ALA SEQRES 10 X 259 VAL ARG TYR ASP PRO GLU SER GLU THR LEU THR LEU ASN SEQRES 11 X 259 GLY GLU MET ALA VAL THR ARG GLY GLN LEU LYS ASN GLY SEQRES 12 X 259 GLY LEU GLY VAL VAL SER ASP ALA ILE PHE ASP LEU GLY SEQRES 13 X 259 MET SER LEU SER SER PHE ASN LEU ASP ASP THR GLU VAL SEQRES 14 X 259 ALA LEU LEU GLN ALA VAL LEU LEU MET SER SER ASP ARG SEQRES 15 X 259 PRO GLY LEU ALA CAS VAL GLU ARG ILE GLU LYS TYR GLN SEQRES 16 X 259 ASP SER PHE LEU LEU ALA PHE GLU HIS TYR ILE ASN TYR SEQRES 17 X 259 ARG LYS HIS HIS VAL THR HIS PHE TRP PRO LYS LEU LEU SEQRES 18 X 259 MET LYS VAL THR ASP LEU ARG MET ILE GLY ALA CAS HIS SEQRES 19 X 259 ALA SER ARG PHE LEU HIS MET LYS VAL GLU CYS PRO THR SEQRES 20 X 259 GLU LEU PHE PRO PRO LEU PHE LEU GLU VAL PHE GLU MODRES 2H6W CAS X 294 CYS S-(DIMETHYLARSENIC)CYSTEINE MODRES 2H6W CAS X 298 CYS S-(DIMETHYLARSENIC)CYSTEINE MODRES 2H6W CAS X 388 CYS S-(DIMETHYLARSENIC)CYSTEINE MODRES 2H6W CAS X 434 CYS S-(DIMETHYLARSENIC)CYSTEINE HET CAS X 294 9 HET CAS X 298 9 HET CAS X 388 9 HET CAS X 434 9 HET T3 X 500 23 HETNAM CAS S-(DIMETHYLARSENIC)CYSTEINE HETNAM T3 3,5,3'TRIIODOTHYRONINE HETSYN T3 T3; THYROID HORMONE; LIOTHYRONINE FORMUL 1 CAS 4(C5 H12 AS N O2 S) FORMUL 2 T3 C15 H12 I3 N O4 FORMUL 3 HOH *47(H2 O) HELIX 1 1 GLU X 202 GLY X 209 1 8 HELIX 2 2 THR X 215 ALA X 231 1 17 HELIX 3 3 HIS X 238 ARG X 243 1 6 HELIX 4 4 ASP X 265 LYS X 289 1 25 HELIX 5 5 LEU X 290 GLU X 295 1 6 HELIX 6 6 PRO X 297 VAL X 319 1 23 HELIX 7 7 THR X 337 GLY X 344 1 8 HELIX 8 8 GLY X 347 SER X 361 1 15 HELIX 9 9 SER X 362 ASN X 364 5 3 HELIX 10 10 ASP X 366 MET X 379 1 14 HELIX 11 11 CAS X 388 LYS X 411 1 24 HELIX 12 12 HIS X 416 LYS X 443 1 28 HELIX 13 13 PRO X 452 GLU X 460 1 9 SHEET 1 A 3 LYS X 244 PHE X 245 0 SHEET 2 A 3 MET X 334 VAL X 336 1 O ALA X 335 N LYS X 244 SHEET 3 A 3 LEU X 328 LEU X 330 -1 N LEU X 330 O MET X 334 LINK C PHE X 293 N CAS X 294 1555 1555 1.33 LINK C CAS X 294 N GLU X 295 1555 1555 1.32 LINK C PRO X 297 N CAS X 298 1555 1555 1.35 LINK C CAS X 298 N GLU X 299 1555 1555 1.31 LINK C ALA X 387 N CAS X 388 1555 1555 1.33 LINK AS CAS X 388 O HOH X 44 1555 1555 2.44 LINK C CAS X 388 N VAL X 389 1555 1555 1.32 LINK C ALA X 433 N CAS X 434 1555 1555 1.32 LINK C CAS X 434 N HIS X 435 1555 1555 1.34 SITE 1 AC1 14 HOH X 28 HOH X 40 PHE X 272 ALA X 279 SITE 2 AC1 14 ARG X 282 MET X 313 ARG X 316 THR X 329 SITE 3 AC1 14 LEU X 330 ASN X 331 LEU X 346 ILE X 353 SITE 4 AC1 14 HIS X 435 PHE X 455 CRYST1 68.957 68.957 131.119 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014502 0.008373 0.000000 0.00000 SCALE2 0.000000 0.016745 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007627 0.00000 HETATM 638 N CAS X 294 39.226 18.413 1.710 1.00 33.86 N HETATM 639 CA CAS X 294 40.330 18.750 2.605 1.00 35.98 C HETATM 640 CB CAS X 294 41.414 17.730 2.317 1.00 36.34 C HETATM 641 C CAS X 294 40.858 20.172 2.498 1.00 35.74 C HETATM 642 O CAS X 294 41.324 20.738 3.473 1.00 36.09 O HETATM 643 SG CAS X 294 40.822 16.180 2.938 1.00 39.04 S HETATM 644 AS CAS X 294 41.222 16.203 5.169 1.00 51.26 AS HETATM 645 CE1 CAS X 294 41.870 14.400 5.757 1.00 47.96 C HETATM 646 CE2 CAS X 294 39.486 16.680 6.031 1.00 44.74 C HETATM 671 N CAS X 298 37.474 24.154 8.368 1.00 36.76 N HETATM 672 CA CAS X 298 36.692 23.345 9.324 1.00 36.70 C HETATM 673 CB CAS X 298 37.322 23.470 10.717 0.30 36.31 C HETATM 674 C CAS X 298 35.210 23.655 9.323 1.00 35.97 C HETATM 675 O CAS X 298 34.396 22.767 9.163 1.00 36.74 O HETATM 676 SG CAS X 298 36.393 22.497 11.849 0.30 35.14 S HETATM 677 AS CAS X 298 35.245 24.011 12.982 0.30 40.77 AS HETATM 678 CE1 CAS X 298 33.259 24.144 12.933 0.30 37.96 C HETATM 679 CE2 CAS X 298 36.309 25.276 14.092 0.30 38.68 C HETATM 1360 N CAS X 388 33.316 29.705 2.002 1.00 40.60 N HETATM 1361 CA CAS X 388 33.836 29.601 0.646 1.00 41.27 C HETATM 1362 CB CAS X 388 34.964 28.604 0.717 1.00 42.05 C HETATM 1363 C CAS X 388 32.831 29.205 -0.437 1.00 39.80 C HETATM 1364 O CAS X 388 33.008 28.216 -1.118 1.00 40.02 O HETATM 1365 SG CAS X 388 36.136 28.974 2.000 1.00 52.05 S HETATM 1366 AS CAS X 388 37.777 29.987 0.851 1.00 73.87 AS HETATM 1367 CE1 CAS X 388 38.432 31.622 1.817 1.00 71.33 C HETATM 1368 CE2 CAS X 388 37.217 30.431 -1.030 1.00 72.42 C HETATM 1769 N CAS X 434 13.042 17.184 3.812 1.00 22.51 N HETATM 1770 CA CAS X 434 11.907 16.520 4.393 1.00 23.23 C HETATM 1771 CB CAS X 434 11.124 15.930 3.172 1.00 24.07 C HETATM 1772 C CAS X 434 12.279 15.628 5.572 1.00 23.35 C HETATM 1773 O CAS X 434 11.531 15.526 6.588 1.00 23.33 O HETATM 1774 SG CAS X 434 9.666 15.117 3.716 0.50 30.97 S HETATM 1775 AS CAS X 434 8.289 16.610 4.832 1.00 50.55 AS HETATM 1776 CE1 CAS X 434 7.965 15.619 6.557 0.50 39.91 C HETATM 1777 CE2 CAS X 434 6.522 16.773 3.859 0.50 37.68 C TER 1989 GLU X 460 HETATM 1990 C1 T3 X 500 21.428 4.464 5.672 1.00 28.53 C HETATM 1991 C2 T3 X 500 17.392 6.136 8.248 1.00 22.64 C HETATM 1992 C3 T3 X 500 20.954 4.201 6.828 1.00 32.33 C HETATM 1993 C4 T3 X 500 16.664 6.248 9.279 1.00 18.11 C HETATM 1994 C5 T3 X 500 19.918 4.235 7.606 1.00 32.64 C HETATM 1995 C6 T3 X 500 16.113 7.063 10.093 1.00 24.70 C HETATM 1996 C7 T3 X 500 18.844 4.824 6.850 1.00 26.78 C HETATM 1997 C8 T3 X 500 16.632 8.312 9.785 1.00 24.63 C HETATM 1998 C9 T3 X 500 19.092 5.187 5.516 1.00 28.17 C HETATM 1999 C10 T3 X 500 17.403 8.114 8.814 1.00 17.79 C HETATM 2000 C11 T3 X 500 20.382 5.022 4.940 1.00 27.03 C HETATM 2001 C12 T3 X 500 17.939 7.374 7.971 1.00 17.98 C HETATM 2002 C13 T3 X 500 22.835 4.246 5.152 1.00 27.13 C HETATM 2003 C15 T3 X 500 22.873 3.680 3.729 1.00 26.43 C HETATM 2004 C17 T3 X 500 24.285 3.312 3.375 1.00 27.91 C HETATM 2005 I1 T3 X 500 19.599 3.592 9.583 1.00 27.43 I HETATM 2006 I2 T3 X 500 14.677 6.781 11.554 1.00 28.13 I HETATM 2007 I3 T3 X 500 17.477 5.958 4.340 1.00 33.04 I HETATM 2008 N1 T3 X 500 21.963 2.567 3.549 1.00 18.77 N HETATM 2009 O1 T3 X 500 16.338 9.449 10.440 1.00 23.05 O HETATM 2010 O2 T3 X 500 17.601 4.953 7.424 1.00 21.63 O HETATM 2011 O3 T3 X 500 24.466 2.219 2.778 1.00 28.47 O HETATM 2012 O4 T3 X 500 25.210 4.130 3.670 1.00 29.38 O HETATM 2013 O HOH X 1 3.409 -2.830 11.326 1.00 34.52 O HETATM 2014 O HOH X 2 8.509 20.224 10.400 1.00 28.83 O HETATM 2015 O HOH X 3 17.817 18.261 10.479 1.00 22.17 O HETATM 2016 O HOH X 4 18.205 15.830 6.726 1.00 9.85 O HETATM 2017 O HOH X 5 20.868 2.272 -10.877 1.00 18.89 O HETATM 2018 O HOH X 6 41.322 11.086 -21.955 1.00 29.75 O HETATM 2019 O HOH X 7 21.300 15.689 5.853 1.00 25.65 O HETATM 2020 O HOH X 8 15.456 19.157 11.751 1.00 19.04 O HETATM 2021 O HOH X 9 3.796 -5.441 11.255 1.00 54.81 O HETATM 2022 O HOH X 10 35.703 4.739 -13.736 1.00 32.09 O HETATM 2023 O HOH X 11 41.631 13.550 0.684 1.00 29.89 O HETATM 2024 O HOH X 12 30.180 22.671 -14.658 1.00 31.20 O HETATM 2025 O HOH X 13 35.506 29.862 8.290 1.00 39.60 O HETATM 2026 O HOH X 14 18.688 18.612 1.544 1.00 17.42 O HETATM 2027 O HOH X 15 11.912 -0.818 -10.352 1.00 30.96 O HETATM 2028 O HOH X 16 18.303 -7.273 9.290 1.00 30.79 O HETATM 2029 O HOH X 17 7.355 -3.538 15.913 1.00 29.88 O HETATM 2030 O HOH X 18 38.367 8.409 5.168 1.00 34.15 O HETATM 2031 O HOH X 19 38.764 16.222 -4.777 1.00 22.82 O HETATM 2032 O HOH X 20 30.452 25.042 10.878 1.00 28.82 O HETATM 2033 O HOH X 21 17.767 1.652 -7.444 1.00 14.05 O HETATM 2034 O HOH X 22 9.595 -2.650 -7.667 1.00 33.85 O HETATM 2035 O HOH X 23 7.316 9.622 -6.621 1.00 22.39 O HETATM 2036 O HOH X 24 35.257 24.393 -12.022 1.00 27.47 O HETATM 2037 O HOH X 25 17.447 18.370 -15.614 1.00 21.79 O HETATM 2038 O HOH X 26 18.408 -2.165 -16.261 1.00 41.78 O HETATM 2039 O HOH X 27 20.010 13.286 -26.051 1.00 34.81 O HETATM 2040 O HOH X 28 26.588 6.113 4.217 0.50 2.00 O HETATM 2041 O HOH X 29 17.481 -4.799 -1.093 0.50 11.90 O HETATM 2042 O HOH X 30 8.114 -2.247 0.245 0.50 5.54 O HETATM 2043 O HOH X 31 23.772 25.107 6.954 0.50 16.61 O HETATM 2044 O HOH X 32 25.161 7.586 -21.459 0.50 8.87 O HETATM 2045 O HOH X 33 26.375 8.343 17.642 0.50 20.57 O HETATM 2046 O HOH X 34 28.293 28.187 -12.353 1.00 43.66 O HETATM 2047 O HOH X 35 26.130 0.706 -4.081 1.00 24.10 O HETATM 2048 O HOH X 36 23.195 17.096 -21.993 1.00 40.14 O HETATM 2049 O HOH X 37 28.854 -11.335 -4.969 1.00 34.34 O HETATM 2050 O HOH X 38 21.862 18.213 8.893 1.00 20.46 O HETATM 2051 O HOH X 39 15.193 19.259 -11.076 1.00 27.39 O HETATM 2052 O HOH X 40 23.115 -0.173 1.955 1.00 21.12 O HETATM 2053 O HOH X 41 19.910 17.966 3.919 1.00 26.44 O HETATM 2054 O HOH X 42 25.961 2.115 -20.010 1.00 26.59 O HETATM 2055 O HOH X 43 24.370 22.429 6.611 1.00 27.50 O HETATM 2056 O HOH X 44 39.109 28.027 0.260 1.00 29.40 O HETATM 2057 O HOH X 45 16.757 19.816 14.107 1.00 32.95 O HETATM 2058 O HOH X 46 21.283 22.008 -2.407 1.00 32.94 O HETATM 2059 O HOH X 47 40.092 25.059 9.613 1.00 33.85 O CONECT 629 638 CONECT 638 629 639 CONECT 639 638 640 641 CONECT 640 639 643 CONECT 641 639 642 647 CONECT 642 641 CONECT 643 640 644 CONECT 644 643 645 646 CONECT 645 644 CONECT 646 644 CONECT 647 641 CONECT 666 671 CONECT 671 666 672 CONECT 672 671 673 674 CONECT 673 672 676 CONECT 674 672 675 680 CONECT 675 674 CONECT 676 673 677 CONECT 677 676 678 679 CONECT 678 677 CONECT 679 677 CONECT 680 674 CONECT 1357 1360 CONECT 1360 1357 1361 CONECT 1361 1360 1362 1363 CONECT 1362 1361 1365 CONECT 1363 1361 1364 1369 CONECT 1364 1363 CONECT 1365 1362 1366 CONECT 1366 1365 1367 1368 2056 CONECT 1367 1366 CONECT 1368 1366 CONECT 1369 1363 CONECT 1766 1769 CONECT 1769 1766 1770 CONECT 1770 1769 1771 1772 CONECT 1771 1770 1774 CONECT 1772 1770 1773 1778 CONECT 1773 1772 CONECT 1774 1771 1775 CONECT 1775 1774 1776 1777 CONECT 1776 1775 CONECT 1777 1775 CONECT 1778 1772 CONECT 1990 1992 2000 2002 CONECT 1991 1993 2001 2010 CONECT 1992 1990 1994 CONECT 1993 1991 1995 CONECT 1994 1992 1996 2005 CONECT 1995 1993 1997 2006 CONECT 1996 1994 1998 2010 CONECT 1997 1995 1999 2009 CONECT 1998 1996 2000 2007 CONECT 1999 1997 2001 CONECT 2000 1990 1998 CONECT 2001 1991 1999 CONECT 2002 1990 2003 CONECT 2003 2002 2004 2008 CONECT 2004 2003 2011 2012 CONECT 2005 1994 CONECT 2006 1995 CONECT 2007 1998 CONECT 2008 2003 CONECT 2009 1997 CONECT 2010 1991 1996 CONECT 2011 2004 CONECT 2012 2004 CONECT 2056 1366 MASTER 389 0 5 13 3 0 4 6 2058 1 68 20 END