data_2HAH # _entry.id 2HAH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2HAH RCSB RCSB038132 WWPDB D_1000038132 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 5FIV 'Structure of wild-type FIV protease in complex with TL-3' unspecified PDB 2AZ8 'Structure of wild-type HIV protease in complex with TL-3' unspecified # _pdbx_database_status.entry_id 2HAH _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-06-12 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Heaslet, H.' 1 'Lin, Y.C.' 2 'Elder, J.H.' 3 'Stout, C.D.' 4 # _citation.id primary _citation.title 'Crystal structure of an FIV/HIV chimeric protease complexed with the broad-based inhibitor, TL-3.' _citation.journal_abbrev Retrovirology _citation.journal_volume 4 _citation.page_first 1 _citation.page_last 1 _citation.year 2007 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1742-4690 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17212810 _citation.pdbx_database_id_DOI 10.1186/1742-4690-4-1 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Heaslet, H.' 1 primary 'Lin, Y.C.' 2 primary 'Tam, K.' 3 primary 'Torbett, B.E.' 4 primary 'Elder, J.H.' 5 primary 'Stout, C.D.' 6 # _cell.entry_id 2HAH _cell.length_a 50.324 _cell.length_b 50.324 _cell.length_c 74.161 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HAH _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Protease 13226.226 1 3.4.23.16 'I37V, N55M, M56I, I57G, V59I, G62F, K63I, L97T, I98P, Q99V, P100N, L101I' 'residues 39-154' ? 2 non-polymer syn ;benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate ; 909.077 1 ? ? ? ? 3 water nat water 18.015 120 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Retropepsin # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;YNKVGTTTTLEKRPEILIFVNGYPIKFLLDTGADITVLNRRDFQVKNSIENGRQMIGGIGGFIRGTNYINVHLEIRDENY KTQCIFGNVCVLEDNSTPVNILGRDNMIKFNIRLVM ; _entity_poly.pdbx_seq_one_letter_code_can ;YNKVGTTTTLEKRPEILIFVNGYPIKFLLDTGADITVLNRRDFQVKNSIENGRQMIGGIGGFIRGTNYINVHLEIRDENY KTQCIFGNVCVLEDNSTPVNILGRDNMIKFNIRLVM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TYR n 1 2 ASN n 1 3 LYS n 1 4 VAL n 1 5 GLY n 1 6 THR n 1 7 THR n 1 8 THR n 1 9 THR n 1 10 LEU n 1 11 GLU n 1 12 LYS n 1 13 ARG n 1 14 PRO n 1 15 GLU n 1 16 ILE n 1 17 LEU n 1 18 ILE n 1 19 PHE n 1 20 VAL n 1 21 ASN n 1 22 GLY n 1 23 TYR n 1 24 PRO n 1 25 ILE n 1 26 LYS n 1 27 PHE n 1 28 LEU n 1 29 LEU n 1 30 ASP n 1 31 THR n 1 32 GLY n 1 33 ALA n 1 34 ASP n 1 35 ILE n 1 36 THR n 1 37 VAL n 1 38 LEU n 1 39 ASN n 1 40 ARG n 1 41 ARG n 1 42 ASP n 1 43 PHE n 1 44 GLN n 1 45 VAL n 1 46 LYS n 1 47 ASN n 1 48 SER n 1 49 ILE n 1 50 GLU n 1 51 ASN n 1 52 GLY n 1 53 ARG n 1 54 GLN n 1 55 MET n 1 56 ILE n 1 57 GLY n 1 58 GLY n 1 59 ILE n 1 60 GLY n 1 61 GLY n 1 62 PHE n 1 63 ILE n 1 64 ARG n 1 65 GLY n 1 66 THR n 1 67 ASN n 1 68 TYR n 1 69 ILE n 1 70 ASN n 1 71 VAL n 1 72 HIS n 1 73 LEU n 1 74 GLU n 1 75 ILE n 1 76 ARG n 1 77 ASP n 1 78 GLU n 1 79 ASN n 1 80 TYR n 1 81 LYS n 1 82 THR n 1 83 GLN n 1 84 CYS n 1 85 ILE n 1 86 PHE n 1 87 GLY n 1 88 ASN n 1 89 VAL n 1 90 CYS n 1 91 VAL n 1 92 LEU n 1 93 GLU n 1 94 ASP n 1 95 ASN n 1 96 SER n 1 97 THR n 1 98 PRO n 1 99 VAL n 1 100 ASN n 1 101 ILE n 1 102 LEU n 1 103 GLY n 1 104 ARG n 1 105 ASP n 1 106 ASN n 1 107 MET n 1 108 ILE n 1 109 LYS n 1 110 PHE n 1 111 ASN n 1 112 ILE n 1 113 ARG n 1 114 LEU n 1 115 VAL n 1 116 MET n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Lentivirus _entity_src_gen.pdbx_gene_src_gene POL _entity_src_gen.gene_src_species 'Feline immunodeficiency virus' _entity_src_gen.gene_src_strain 'isolate petaluma' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Feline immunodeficiency virus (isolate Petaluma)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11674 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET-21a(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POL_FIVPE _struct_ref.pdbx_db_accession P16088 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;YNKVGTTTTLEKRPEILIFVNGYPIKFLLDTGADITILNRRDFQVKNSIENGRQNMIGVGGGKRGTNYINVHLEIRDENY KTQCIFGNVCVLEDNSLIQPLLGRDNMIKFNIRLVM ; _struct_ref.pdbx_align_begin 39 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2HAH _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 116 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P16088 _struct_ref_seq.db_align_beg 39 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 154 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 116 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2HAH VAL A 37 ? UNP P16088 ILE 75 ENGINEERED 37 1 1 2HAH MET A 55 ? UNP P16088 ASN 93 ENGINEERED 55 2 1 2HAH ILE A 56 ? UNP P16088 MET 94 ENGINEERED 56 3 1 2HAH GLY A 57 ? UNP P16088 ILE 95 ENGINEERED 57 4 1 2HAH ILE A 59 ? UNP P16088 VAL 97 ENGINEERED 59 5 1 2HAH PHE A 62 ? UNP P16088 GLY 100 ENGINEERED 62 6 1 2HAH ILE A 63 ? UNP P16088 LYS 101 ENGINEERED 63 7 1 2HAH THR A 97 ? UNP P16088 LEU 135 ENGINEERED 97 8 1 2HAH PRO A 98 ? UNP P16088 ILE 136 ENGINEERED 98 9 1 2HAH VAL A 99 ? UNP P16088 GLN 137 ENGINEERED 99 10 1 2HAH ASN A 100 ? UNP P16088 PRO 138 ENGINEERED 100 11 1 2HAH ILE A 101 ? UNP P16088 LEU 139 ENGINEERED 101 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3TL peptide-like . ;benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate ; 'TL-3, C2 symmetric inhibitor' 'C50 H64 N6 O10' 909.077 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2HAH _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.05 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 39.97 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 281.16 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '100mM Hepes, 2.5M LiCl2, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 281.16K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2006-02-18 _diffrn_detector.details 'Double-crystal monochromator, 1m long Rh coated bent cylindrical mirror for horizontal and vertical focusing' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Double crystal, parallel' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97944 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL1-5' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97944 _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL1-5 # _reflns.entry_id 2HAH _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 3.0 _reflns.d_resolution_high 1.7 _reflns.d_resolution_low 74.0 _reflns.number_all 12484 _reflns.number_obs 12440 _reflns.percent_possible_obs 97.0 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.7 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 99.0 _reflns_shell.Rmerge_I_obs 0.368 _reflns_shell.meanI_over_sigI_obs 2.6 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 6.0 _reflns_shell.number_unique_all 5451 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2HAH _refine.ls_d_res_high 1.700 _refine.ls_d_res_low 74.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.600 _refine.ls_number_reflns_obs 12396 _refine.ls_R_factor_R_work 0.184 _refine.ls_R_factor_R_free 0.233 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 627 _refine.B_iso_mean 24.431 _refine.solvent_model_param_bsol 60.962 _refine.aniso_B[1][1] 0.375 _refine.aniso_B[2][2] 0.375 _refine.aniso_B[3][3] -0.751 _refine.aniso_B[1][2] 0.610 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.overall_FOM_work_R_set 0.874 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 12424 _refine.ls_R_factor_all 0.184 _refine.ls_R_factor_obs 0.233 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'pdb entry 5FIV' _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 892 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 120 _refine_hist.number_atoms_total 1045 _refine_hist.d_res_high 1.700 _refine_hist.d_res_low 74.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_mcbond_it ? 1.166 1.500 ? 'X-RAY DIFFRACTION' ? c_scbond_it ? 2.112 2.000 ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? 1.772 2.000 ? 'X-RAY DIFFRACTION' ? c_scangle_it ? 3.055 2.500 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 1.700 1.750 12 . 960 . 0.251 0.265 . 56 . . 1016 . 'X-RAY DIFFRACTION' 1.750 1.810 12 . 967 . 0.231 0.257 . 41 . . 1008 . 'X-RAY DIFFRACTION' 1.810 1.870 12 . 972 . 0.221 0.335 . 49 . . 1021 . 'X-RAY DIFFRACTION' 1.870 1.950 12 . 954 . 0.228 0.269 . 61 . . 1015 . 'X-RAY DIFFRACTION' 1.950 2.030 12 . 975 . 0.186 0.245 . 44 . . 1019 . 'X-RAY DIFFRACTION' 2.030 2.140 12 . 970 . 0.182 0.204 . 48 . . 1018 . 'X-RAY DIFFRACTION' 2.140 2.280 12 . 983 . 0.18 0.241 . 50 . . 1033 . 'X-RAY DIFFRACTION' 2.280 2.450 12 . 976 . 0.2 0.261 . 45 . . 1021 . 'X-RAY DIFFRACTION' 2.450 2.700 12 . 968 . 0.16 0.218 . 60 . . 1028 . 'X-RAY DIFFRACTION' 2.700 3.090 12 . 1004 . 0.193 0.241 . 59 . . 1063 . 'X-RAY DIFFRACTION' 3.090 3.890 12 . 999 . 0.162 0.21 . 61 . . 1060 . 'X-RAY DIFFRACTION' 3.890 74.000 12 . 1041 . 0.175 0.22 . 53 . . 1094 . 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param ? 'X-RAY DIFFRACTION' 2 int.par ? 'X-RAY DIFFRACTION' 3 water_rep.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 2HAH _struct.title 'The structure of FIV 12S protease in complex with TL-3' _struct.pdbx_descriptor 'Protease (E.C.3.4.23.16)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2HAH _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text 'retroviral, protease, aspartyl, feline, HYDROLASE-HYDROLASE INHIBITOR COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 41 ? PHE A 43 ? ARG A 41 PHE A 43 5 ? 3 HELX_P HELX_P2 2 GLY A 103 ? ILE A 108 ? GLY A 103 ILE A 108 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 49 ? GLY A 58 ? ILE A 49 GLY A 58 A 2 GLY A 61 ? ILE A 75 ? GLY A 61 ILE A 75 A 3 GLN A 83 ? LEU A 92 ? GLN A 83 LEU A 92 A 4 VAL A 37 ? ASN A 39 ? VAL A 37 ASN A 39 A 5 ASN A 100 ? LEU A 102 ? ASN A 100 LEU A 102 A 6 TYR A 23 ? LEU A 29 ? TYR A 23 LEU A 29 A 7 GLU A 15 ? VAL A 20 ? GLU A 15 VAL A 20 A 8 GLY A 61 ? ILE A 75 ? GLY A 61 ILE A 75 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 49 ? N ILE A 49 O ILE A 69 ? O ILE A 69 A 2 3 N THR A 66 ? N THR A 66 O VAL A 91 ? O VAL A 91 A 3 4 O LEU A 92 ? O LEU A 92 N LEU A 38 ? N LEU A 38 A 4 5 N VAL A 37 ? N VAL A 37 O ILE A 101 ? O ILE A 101 A 5 6 O LEU A 102 ? O LEU A 102 N LEU A 28 ? N LEU A 28 A 6 7 O TYR A 23 ? O TYR A 23 N VAL A 20 ? N VAL A 20 A 7 8 N PHE A 19 ? N PHE A 19 O GLU A 74 ? O GLU A 74 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 19 _struct_site.details 'BINDING SITE FOR RESIDUE 3TL A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 19 ARG A 13 ? ARG A 13 . ? 5_553 ? 2 AC1 19 PRO A 24 ? PRO A 24 . ? 2_655 ? 3 AC1 19 ILE A 25 ? ILE A 25 . ? 2_655 ? 4 AC1 19 ASP A 30 ? ASP A 30 . ? 1_555 ? 5 AC1 19 ASP A 30 ? ASP A 30 . ? 5_553 ? 6 AC1 19 GLY A 32 ? GLY A 32 . ? 1_555 ? 7 AC1 19 ALA A 33 ? ALA A 33 . ? 1_555 ? 8 AC1 19 ASP A 34 ? ASP A 34 . ? 1_555 ? 9 AC1 19 GLN A 54 ? GLN A 54 . ? 1_555 ? 10 AC1 19 MET A 55 ? MET A 55 . ? 1_555 ? 11 AC1 19 ILE A 56 ? ILE A 56 . ? 1_555 ? 12 AC1 19 GLY A 57 ? GLY A 57 . ? 1_555 ? 13 AC1 19 GLY A 58 ? GLY A 58 . ? 1_555 ? 14 AC1 19 ILE A 59 ? ILE A 59 . ? 1_555 ? 15 AC1 19 ILE A 59 ? ILE A 59 . ? 5_553 ? 16 AC1 19 PRO A 98 ? PRO A 98 . ? 5_553 ? 17 AC1 19 VAL A 99 ? VAL A 99 . ? 5_553 ? 18 AC1 19 HOH C . ? HOH A 231 . ? 5_553 ? 19 AC1 19 HOH C . ? HOH A 231 . ? 1_555 ? # _atom_sites.entry_id 2HAH _atom_sites.fract_transf_matrix[1][1] 0.019871 _atom_sites.fract_transf_matrix[1][2] 0.011473 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022945 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013484 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TYR 1 1 ? ? ? A . n A 1 2 ASN 2 2 ? ? ? A . n A 1 3 LYS 3 3 ? ? ? A . n A 1 4 VAL 4 4 ? ? ? A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 ARG 13 13 13 ARG ARG A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 ASN 39 39 39 ASN ASN A . n A 1 40 ARG 40 40 40 ARG ARG A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 ASP 42 42 42 ASP ASP A . n A 1 43 PHE 43 43 43 PHE PHE A . n A 1 44 GLN 44 44 44 GLN GLN A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 ASN 51 51 51 ASN ASN A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 MET 55 55 55 MET MET A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 ASN 67 67 67 ASN ASN A . n A 1 68 TYR 68 68 68 TYR TYR A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 HIS 72 72 72 HIS HIS A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 ARG 76 76 76 ARG ARG A . n A 1 77 ASP 77 77 77 ASP ASP A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 ASN 79 79 79 ASN ASN A . n A 1 80 TYR 80 80 80 TYR TYR A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 GLN 83 83 83 GLN GLN A . n A 1 84 CYS 84 84 84 CYS CYS A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 CYS 90 90 90 CYS CYS A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 ASP 94 94 94 ASP ASP A . n A 1 95 ASN 95 95 95 ASN ASN A . n A 1 96 SER 96 96 96 SER SER A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 PRO 98 98 98 PRO PRO A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 ASN 100 100 100 ASN ASN A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 ARG 104 104 104 ARG ARG A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 ASN 106 106 106 ASN ASN A . n A 1 107 MET 107 107 107 MET MET A . n A 1 108 ILE 108 108 108 ILE ILE A . n A 1 109 LYS 109 109 109 LYS LYS A . n A 1 110 PHE 110 110 110 PHE PHE A . n A 1 111 ASN 111 111 111 ASN ASN A . n A 1 112 ILE 112 112 112 ILE ILE A . n A 1 113 ARG 113 113 113 ARG ARG A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 MET 116 116 116 MET MET A . n # _pdbx_molecule_features.prd_id PRD_000434 _pdbx_molecule_features.name 'N-[(benzyloxy)carbonyl]-L-alanyl-N-[(1R)-1-benzyl-2-oxoethyl]-L-valinamide' _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000434 _pdbx_molecule.asym_id B # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5450 ? 1 MORE -22 ? 1 'SSA (A^2)' 10220 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_553 x-y,-y,-z-4/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -98.8813333333 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 231 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-02-13 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2013-02-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Non-polymer description' 6 3 'Structure model' 'Structure summary' 7 3 'Structure model' 'Version format compliance' 8 4 'Structure model' Other # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal d*TREK . ? package 'Pflugrath, J.W.' jwp@RigakuMSC.com 'data scaling' http://www.msc.com/protein/dtrek.html ? ? 1 MOLREP . ? other 'A. Vagin' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 2 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 3 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 Blu-Ice . ? ? ? ? 'data collection' ? ? ? 5 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 6 # _pdbx_entry_details.entry_id 2HAH _pdbx_entry_details.nonpolymer_details 'THE INHIBITOR IS A C2 SYMMETRIC HIV PROTEASE' _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 46 ? ? 52.24 -126.33 2 1 ASN A 51 ? ? -146.35 39.49 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A LYS 81 ? CD ? A LYS 81 CD 2 1 Y 0 A LYS 81 ? CE ? A LYS 81 CE 3 1 Y 0 A LYS 81 ? NZ ? A LYS 81 NZ 4 1 N 1 A 3TL 201 ? N51 ? B 3TL 1 N51 5 1 N 1 A 3TL 201 ? C51 ? B 3TL 1 C51 6 1 N 1 A 3TL 201 ? C52 ? B 3TL 1 C52 7 1 N 1 A 3TL 201 ? O51 ? B 3TL 1 O51 8 1 N 1 A 3TL 201 ? C53 ? B 3TL 1 C53 9 1 N 1 A 3TL 201 ? C54 ? B 3TL 1 C54 10 1 N 1 A 3TL 201 ? C55 ? B 3TL 1 C55 11 1 N 1 A 3TL 201 ? C59 ? B 3TL 1 C59 12 1 N 1 A 3TL 201 ? C56 ? B 3TL 1 C56 13 1 N 1 A 3TL 201 ? C58 ? B 3TL 1 C58 14 1 N 1 A 3TL 201 ? C57 ? B 3TL 1 C57 15 1 N 1 A 3TL 201 ? N52 ? B 3TL 1 N52 16 1 N 1 A 3TL 201 ? C60 ? B 3TL 1 C60 17 1 N 1 A 3TL 201 ? C61 ? B 3TL 1 C61 18 1 N 1 A 3TL 201 ? O52 ? B 3TL 1 O52 19 1 N 1 A 3TL 201 ? C62 ? B 3TL 1 C62 20 1 N 1 A 3TL 201 ? CG6 ? B 3TL 1 CG6 21 1 N 1 A 3TL 201 ? CG5 ? B 3TL 1 CG5 22 1 N 1 A 3TL 201 ? N54 ? B 3TL 1 N54 23 1 N 1 A 3TL 201 ? C68 ? B 3TL 1 C68 24 1 N 1 A 3TL 201 ? C69 ? B 3TL 1 C69 25 1 N 1 A 3TL 201 ? O54 ? B 3TL 1 O54 26 1 N 1 A 3TL 201 ? C70 ? B 3TL 1 C70 27 1 N 1 A 3TL 201 ? C81 ? B 3TL 1 C81 28 1 N 1 A 3TL 201 ? O58 ? B 3TL 1 O58 29 1 N 1 A 3TL 201 ? O59 ? B 3TL 1 O59 30 1 N 1 A 3TL 201 ? CA5 ? B 3TL 1 CA5 31 1 N 1 A 3TL 201 ? C50 ? B 3TL 1 C50 32 1 N 1 A 3TL 201 ? C63 ? B 3TL 1 C63 33 1 N 1 A 3TL 201 ? C64 ? B 3TL 1 C64 34 1 N 1 A 3TL 201 ? C65 ? B 3TL 1 C65 35 1 N 1 A 3TL 201 ? C66 ? B 3TL 1 C66 36 1 N 1 A 3TL 201 ? C67 ? B 3TL 1 C67 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A TYR 1 ? A TYR 1 2 1 Y 1 A ASN 2 ? A ASN 2 3 1 Y 1 A LYS 3 ? A LYS 3 4 1 Y 1 A VAL 4 ? A VAL 4 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate ; 3TL 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3TL 1 201 201 3TL 3TL A . C 3 HOH 1 202 202 HOH HOH A . C 3 HOH 2 203 203 HOH HOH A . C 3 HOH 3 204 204 HOH HOH A . C 3 HOH 4 205 205 HOH HOH A . C 3 HOH 5 206 206 HOH HOH A . C 3 HOH 6 207 207 HOH HOH A . C 3 HOH 7 208 208 HOH HOH A . C 3 HOH 8 209 209 HOH HOH A . C 3 HOH 9 210 210 HOH HOH A . C 3 HOH 10 211 211 HOH HOH A . C 3 HOH 11 212 212 HOH HOH A . C 3 HOH 12 213 213 HOH HOH A . C 3 HOH 13 214 214 HOH HOH A . C 3 HOH 14 215 215 HOH HOH A . C 3 HOH 15 216 216 HOH HOH A . C 3 HOH 16 217 217 HOH HOH A . C 3 HOH 17 218 218 HOH HOH A . C 3 HOH 18 219 219 HOH HOH A . C 3 HOH 19 220 220 HOH HOH A . C 3 HOH 20 221 221 HOH HOH A . C 3 HOH 21 222 222 HOH HOH A . C 3 HOH 22 223 223 HOH HOH A . C 3 HOH 23 224 224 HOH HOH A . C 3 HOH 24 225 225 HOH HOH A . C 3 HOH 25 226 226 HOH HOH A . C 3 HOH 26 227 227 HOH HOH A . C 3 HOH 27 228 228 HOH HOH A . C 3 HOH 28 229 229 HOH HOH A . C 3 HOH 29 230 230 HOH HOH A . C 3 HOH 30 231 231 HOH HOH A . C 3 HOH 31 232 232 HOH HOH A . C 3 HOH 32 233 233 HOH HOH A . C 3 HOH 33 234 234 HOH HOH A . C 3 HOH 34 235 235 HOH HOH A . C 3 HOH 35 236 236 HOH HOH A . C 3 HOH 36 237 237 HOH HOH A . C 3 HOH 37 238 238 HOH HOH A . C 3 HOH 38 239 239 HOH HOH A . C 3 HOH 39 240 240 HOH HOH A . C 3 HOH 40 241 241 HOH HOH A . C 3 HOH 41 242 242 HOH HOH A . C 3 HOH 42 243 243 HOH HOH A . C 3 HOH 43 244 244 HOH HOH A . C 3 HOH 44 245 245 HOH HOH A . C 3 HOH 45 246 246 HOH HOH A . C 3 HOH 46 247 247 HOH HOH A . C 3 HOH 47 248 248 HOH HOH A . C 3 HOH 48 249 249 HOH HOH A . C 3 HOH 49 250 250 HOH HOH A . C 3 HOH 50 251 251 HOH HOH A . C 3 HOH 51 252 252 HOH HOH A . C 3 HOH 52 253 253 HOH HOH A . C 3 HOH 53 254 254 HOH HOH A . C 3 HOH 54 255 255 HOH HOH A . C 3 HOH 55 256 256 HOH HOH A . C 3 HOH 56 257 257 HOH HOH A . C 3 HOH 57 258 258 HOH HOH A . C 3 HOH 58 259 259 HOH HOH A . C 3 HOH 59 260 260 HOH HOH A . C 3 HOH 60 261 261 HOH HOH A . C 3 HOH 61 262 262 HOH HOH A . C 3 HOH 62 263 263 HOH HOH A . C 3 HOH 63 264 264 HOH HOH A . C 3 HOH 64 265 265 HOH HOH A . C 3 HOH 65 266 266 HOH HOH A . C 3 HOH 66 267 267 HOH HOH A . C 3 HOH 67 268 268 HOH HOH A . C 3 HOH 68 269 269 HOH HOH A . C 3 HOH 69 270 270 HOH HOH A . C 3 HOH 70 271 271 HOH HOH A . C 3 HOH 71 272 272 HOH HOH A . C 3 HOH 72 273 273 HOH HOH A . C 3 HOH 73 274 274 HOH HOH A . C 3 HOH 74 275 275 HOH HOH A . C 3 HOH 75 276 276 HOH HOH A . C 3 HOH 76 277 277 HOH HOH A . C 3 HOH 77 278 278 HOH HOH A . C 3 HOH 78 279 279 HOH HOH A . C 3 HOH 79 280 280 HOH HOH A . C 3 HOH 80 281 281 HOH HOH A . C 3 HOH 81 282 282 HOH HOH A . C 3 HOH 82 283 283 HOH HOH A . C 3 HOH 83 284 284 HOH HOH A . C 3 HOH 84 285 285 HOH HOH A . C 3 HOH 85 286 286 HOH HOH A . C 3 HOH 86 287 287 HOH HOH A . C 3 HOH 87 288 288 HOH HOH A . C 3 HOH 88 289 289 HOH HOH A . C 3 HOH 89 290 290 HOH HOH A . C 3 HOH 90 291 291 HOH HOH A . C 3 HOH 91 292 292 HOH HOH A . C 3 HOH 92 293 293 HOH HOH A . C 3 HOH 93 294 294 HOH HOH A . C 3 HOH 94 295 295 HOH HOH A . C 3 HOH 95 296 296 HOH HOH A . C 3 HOH 96 297 297 HOH HOH A . C 3 HOH 97 298 298 HOH HOH A . C 3 HOH 98 299 299 HOH HOH A . C 3 HOH 99 300 300 HOH HOH A . C 3 HOH 100 301 301 HOH HOH A . C 3 HOH 101 302 302 HOH HOH A . C 3 HOH 102 303 303 HOH HOH A . C 3 HOH 103 304 304 HOH HOH A . C 3 HOH 104 305 305 HOH HOH A . C 3 HOH 105 306 306 HOH HOH A . C 3 HOH 106 307 307 HOH HOH A . C 3 HOH 107 308 308 HOH HOH A . C 3 HOH 108 309 309 HOH HOH A . C 3 HOH 109 310 310 HOH HOH A . C 3 HOH 110 311 311 HOH HOH A . C 3 HOH 111 312 312 HOH HOH A . C 3 HOH 112 313 313 HOH HOH A . C 3 HOH 113 314 314 HOH HOH A . C 3 HOH 114 315 315 HOH HOH A . C 3 HOH 115 316 316 HOH HOH A . C 3 HOH 116 317 317 HOH HOH A . C 3 HOH 117 318 318 HOH HOH A . C 3 HOH 118 319 319 HOH HOH A . C 3 HOH 119 320 320 HOH HOH A . C 3 HOH 120 321 321 HOH HOH A . #