data_2HB5 # _entry.id 2HB5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.367 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2HB5 pdb_00002hb5 10.2210/pdb2hb5/pdb RCSB RCSB038154 ? ? WWPDB D_1000038154 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2HB5 _pdbx_database_status.recvd_initial_deposition_date 2006-06-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lim, D.' 1 ? 'Gregorio, G.G.' 2 ? 'Bingman, C.A.' 3 ? 'Martinez-Hackert, E.' 4 ? 'Hendrickson, W.A.' 5 ? 'Goff, S.P.' 6 ? # _citation.id primary _citation.title 'Crystal Structure of the Moloney Murine Leukemia Virus RNase H Domain.' _citation.journal_abbrev J.Virol. _citation.journal_volume 80 _citation.page_first 8379 _citation.page_last 8389 _citation.year 2006 _citation.journal_id_ASTM JOVIAM _citation.country US _citation.journal_id_ISSN 0022-538X _citation.journal_id_CSD 0825 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16912289 _citation.pdbx_database_id_DOI 10.1128/JVI.00750-06 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lim, D.' 1 ? primary 'Gregorio, G.G.' 2 ? primary 'Bingman, C.A.' 3 ? primary 'Martinez-Hackert, E.' 4 ? primary 'Hendrickson, W.A.' 5 ? primary 'Goff, S.P.' 6 ? # _cell.entry_id 2HB5 _cell.length_a 32.326 _cell.length_b 34.107 _cell.length_c 34.802 _cell.angle_alpha 78.21 _cell.angle_beta 69.85 _cell.angle_gamma 64.79 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HB5 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Reverse transcriptase/ribonuclease H' 17787.809 1 3.1.26.4 ? 'RNase H Domain (Residues 618-791)' ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 148 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GILAEAHGTRPDLTDQPLPDADHTWYTDGSSLLQEGQRKAGAAVTTETEVIWAKALPAGTSAQRAELIALTQALK(MSE) AEGKKLNVYTDSRYAFATAHLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNR(MSE)ADQAARKA AITETPDTSTLL ; _entity_poly.pdbx_seq_one_letter_code_can ;GILAEAHGTRPDLTDQPLPDADHTWYTDGSSLLQEGQRKAGAAVTTETEVIWAKALPAGTSAQRAELIALTQALKMAEGK KLNVYTDSRYAFATAHLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKAAITETPDT STLL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ILE n 1 3 LEU n 1 4 ALA n 1 5 GLU n 1 6 ALA n 1 7 HIS n 1 8 GLY n 1 9 THR n 1 10 ARG n 1 11 PRO n 1 12 ASP n 1 13 LEU n 1 14 THR n 1 15 ASP n 1 16 GLN n 1 17 PRO n 1 18 LEU n 1 19 PRO n 1 20 ASP n 1 21 ALA n 1 22 ASP n 1 23 HIS n 1 24 THR n 1 25 TRP n 1 26 TYR n 1 27 THR n 1 28 ASP n 1 29 GLY n 1 30 SER n 1 31 SER n 1 32 LEU n 1 33 LEU n 1 34 GLN n 1 35 GLU n 1 36 GLY n 1 37 GLN n 1 38 ARG n 1 39 LYS n 1 40 ALA n 1 41 GLY n 1 42 ALA n 1 43 ALA n 1 44 VAL n 1 45 THR n 1 46 THR n 1 47 GLU n 1 48 THR n 1 49 GLU n 1 50 VAL n 1 51 ILE n 1 52 TRP n 1 53 ALA n 1 54 LYS n 1 55 ALA n 1 56 LEU n 1 57 PRO n 1 58 ALA n 1 59 GLY n 1 60 THR n 1 61 SER n 1 62 ALA n 1 63 GLN n 1 64 ARG n 1 65 ALA n 1 66 GLU n 1 67 LEU n 1 68 ILE n 1 69 ALA n 1 70 LEU n 1 71 THR n 1 72 GLN n 1 73 ALA n 1 74 LEU n 1 75 LYS n 1 76 MSE n 1 77 ALA n 1 78 GLU n 1 79 GLY n 1 80 LYS n 1 81 LYS n 1 82 LEU n 1 83 ASN n 1 84 VAL n 1 85 TYR n 1 86 THR n 1 87 ASP n 1 88 SER n 1 89 ARG n 1 90 TYR n 1 91 ALA n 1 92 PHE n 1 93 ALA n 1 94 THR n 1 95 ALA n 1 96 HIS n 1 97 LEU n 1 98 THR n 1 99 SER n 1 100 GLU n 1 101 GLY n 1 102 LYS n 1 103 GLU n 1 104 ILE n 1 105 LYS n 1 106 ASN n 1 107 LYS n 1 108 ASP n 1 109 GLU n 1 110 ILE n 1 111 LEU n 1 112 ALA n 1 113 LEU n 1 114 LEU n 1 115 LYS n 1 116 ALA n 1 117 LEU n 1 118 PHE n 1 119 LEU n 1 120 PRO n 1 121 LYS n 1 122 ARG n 1 123 LEU n 1 124 SER n 1 125 ILE n 1 126 ILE n 1 127 HIS n 1 128 CYS n 1 129 PRO n 1 130 GLY n 1 131 HIS n 1 132 GLN n 1 133 LYS n 1 134 GLY n 1 135 HIS n 1 136 SER n 1 137 ALA n 1 138 GLU n 1 139 ALA n 1 140 ARG n 1 141 GLY n 1 142 ASN n 1 143 ARG n 1 144 MSE n 1 145 ALA n 1 146 ASP n 1 147 GLN n 1 148 ALA n 1 149 ALA n 1 150 ARG n 1 151 LYS n 1 152 ALA n 1 153 ALA n 1 154 ILE n 1 155 THR n 1 156 GLU n 1 157 THR n 1 158 PRO n 1 159 ASP n 1 160 THR n 1 161 SER n 1 162 THR n 1 163 LEU n 1 164 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Gammaretrovirus _entity_src_gen.pdbx_gene_src_gene POL _entity_src_gen.gene_src_species 'Murine leukemia virus' _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Moloney murine leukemia virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11801 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POL_MLVMO _struct_ref.pdbx_db_accession P03355 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 618 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2HB5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 164 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P03355 _struct_ref_seq.db_align_beg 618 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 791 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 164 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2HB5 GLY A 1 ? UNP P03355 ? ? 'cloning artifact' 1 1 1 2HB5 MSE A 76 ? UNP P03355 MET 692 'modified residue' 76 2 1 2HB5 ? A ? ? UNP P03355 ILE 713 deletion ? 3 1 2HB5 ? A ? ? UNP P03355 HIS 714 deletion ? 4 1 2HB5 ? A ? ? UNP P03355 GLY 715 deletion ? 5 1 2HB5 ? A ? ? UNP P03355 GLU 716 deletion ? 6 1 2HB5 ? A ? ? UNP P03355 ILE 717 deletion ? 7 1 2HB5 ? A ? ? UNP P03355 TYR 718 deletion ? 8 1 2HB5 ? A ? ? UNP P03355 ARG 719 deletion ? 9 1 2HB5 ? A ? ? UNP P03355 ARG 720 deletion ? 10 1 2HB5 ? A ? ? UNP P03355 ARG 721 deletion ? 11 1 2HB5 ? A ? ? UNP P03355 GLY 722 deletion ? 12 1 2HB5 ? A ? ? UNP P03355 LEU 723 deletion ? 13 1 2HB5 MSE A 144 ? UNP P03355 MET 771 'modified residue' 144 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2HB5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.83 _exptl_crystal.density_percent_sol 32.69 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_details ;15% PEG 4000, 0.1M ammonium sulfate, 150mM NaCl, 1.25%PEG-MME 550, 1% 2-propanol, 0.5mM zinc sulfate, 5mM MES , pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 Channel' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.98793 1.0 2 0.97938 1.0 3 0.97908 1.0 4 0.96866 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.98793, 0.97938, 0.97908, 0.96866' # _reflns.entry_id 2HB5 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 1.59 _reflns.d_resolution_low 21.66 _reflns.number_all 15825 _reflns.number_obs 15825 _reflns.percent_possible_obs 93.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.d_res_high 1.59 _reflns_shell.d_res_low 1.66 _reflns_shell.percent_possible_all 91.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.entry_id 2HB5 _refine.ls_d_res_high 1.59 _refine.ls_d_res_low 21.66 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 15825 _refine.ls_number_reflns_obs 15825 _refine.ls_number_reflns_R_free 1593 _refine.ls_percent_reflns_obs 93.4 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.1955 _refine.ls_R_factor_R_free 0.2209 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free 9.4 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1229 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 148 _refine_hist.number_atoms_total 1383 _refine_hist.d_res_high 1.59 _refine_hist.d_res_low 21.66 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005344 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.26072 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 2HB5 _struct.title 'Crystal Structure of the Moloney Murine Leukemia Virus RNase H Domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2HB5 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'RNase H, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 61 ? ALA A 77 ? SER A 61 ALA A 77 1 ? 17 HELX_P HELX_P2 2 SER A 88 ? ALA A 95 ? SER A 88 ALA A 95 1 ? 8 HELX_P HELX_P3 3 ASN A 106 ? LEU A 117 ? ASN A 106 LEU A 117 1 ? 12 HELX_P HELX_P4 4 SER A 136 ? GLU A 156 ? SER A 136 GLU A 156 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LYS 75 C A ? ? 1_555 A MSE 76 N ? ? A LYS 75 A MSE 76 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? A LYS 75 C B ? ? 1_555 A MSE 76 N ? ? A LYS 75 A MSE 76 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale3 covale both ? A MSE 76 C ? ? ? 1_555 A ALA 77 N ? ? A MSE 76 A ALA 77 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale4 covale both ? A ARG 143 C ? ? ? 1_555 A MSE 144 N ? ? A ARG 143 A MSE 144 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale5 covale both ? A MSE 144 C ? ? ? 1_555 A ALA 145 N ? ? A MSE 144 A ALA 145 1_555 ? ? ? ? ? ? ? 1.328 ? ? metalc1 metalc ? ? A ASP 28 OD2 ? ? ? 1_555 B MG . MG ? ? A ASP 28 A MG 200 1_555 ? ? ? ? ? ? ? 2.410 ? ? metalc2 metalc ? ? A GLU 66 OE2 A ? ? 1_555 B MG . MG ? ? A GLU 66 A MG 200 1_555 ? ? ? ? ? ? ? 2.378 ? ? metalc3 metalc ? ? A ASP 87 OD2 ? ? ? 1_555 B MG . MG ? ? A ASP 87 A MG 200 1_555 ? ? ? ? ? ? ? 2.022 ? ? metalc4 metalc ? ? A ASP 87 OD1 ? ? ? 1_555 B MG . MG ? ? A ASP 87 A MG 200 1_555 ? ? ? ? ? ? ? 2.795 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 200 A HOH 202 1_555 ? ? ? ? ? ? ? 2.496 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 200 A HOH 203 1_555 ? ? ? ? ? ? ? 2.601 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 50 ? LEU A 56 ? VAL A 50 LEU A 56 A 2 GLN A 37 ? THR A 45 ? GLN A 37 THR A 45 A 3 HIS A 23 ? GLN A 34 ? HIS A 23 GLN A 34 A 4 LYS A 81 ? THR A 86 ? LYS A 81 THR A 86 A 5 ARG A 122 ? HIS A 127 ? ARG A 122 HIS A 127 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TRP A 52 ? O TRP A 52 N VAL A 44 ? N VAL A 44 A 2 3 O GLY A 41 ? O GLY A 41 N SER A 30 ? N SER A 30 A 3 4 N TRP A 25 ? N TRP A 25 O TYR A 85 ? O TYR A 85 A 4 5 N VAL A 84 ? N VAL A 84 O ILE A 126 ? O ILE A 126 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 200 ? 5 'BINDING SITE FOR RESIDUE MG A 200' AC2 Software A SO4 201 ? 10 'BINDING SITE FOR RESIDUE SO4 A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASP A 28 ? ASP A 28 . ? 1_555 ? 2 AC1 5 GLU A 66 ? GLU A 66 . ? 1_555 ? 3 AC1 5 ASP A 87 ? ASP A 87 . ? 1_555 ? 4 AC1 5 HOH D . ? HOH A 202 . ? 1_555 ? 5 AC1 5 HOH D . ? HOH A 203 . ? 1_555 ? 6 AC2 10 ARG A 64 ? ARG A 64 . ? 1_555 ? 7 AC2 10 LYS A 105 ? LYS A 105 . ? 1_555 ? 8 AC2 10 ASN A 106 ? ASN A 106 . ? 1_555 ? 9 AC2 10 LYS A 107 ? LYS A 107 . ? 1_555 ? 10 AC2 10 GLY A 134 ? GLY A 134 . ? 1_456 ? 11 AC2 10 HIS A 135 ? HIS A 135 . ? 1_456 ? 12 AC2 10 SER A 136 ? SER A 136 . ? 1_456 ? 13 AC2 10 HOH D . ? HOH A 204 . ? 1_555 ? 14 AC2 10 HOH D . ? HOH A 229 . ? 1_456 ? 15 AC2 10 HOH D . ? HOH A 323 . ? 1_555 ? # _database_PDB_matrix.entry_id 2HB5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2HB5 _atom_sites.fract_transf_matrix[1][1] 0.030935 _atom_sites.fract_transf_matrix[1][2] -0.014563 _atom_sites.fract_transf_matrix[1][3] -0.010387 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.032406 _atom_sites.fract_transf_matrix[2][3] -0.002203 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.030678 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 ? ? ? A . n A 1 2 ILE 2 2 ? ? ? A . n A 1 3 LEU 3 3 ? ? ? A . n A 1 4 ALA 4 4 ? ? ? A . n A 1 5 GLU 5 5 ? ? ? A . n A 1 6 ALA 6 6 ? ? ? A . n A 1 7 HIS 7 7 7 HIS GLY A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 HIS 23 23 23 HIS HIS A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 TRP 25 25 25 TRP TRP A . n A 1 26 TYR 26 26 26 TYR TYR A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 GLN 34 34 34 GLN GLN A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 TRP 52 52 52 TRP TRP A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 GLN 63 63 63 GLN GLN A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 THR 71 71 71 THR THR A . n A 1 72 GLN 72 72 72 GLN GLN A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 LYS 75 75 75 LYS LYS A . n A 1 76 MSE 76 76 76 MSE MSE A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 TYR 85 85 85 TYR TYR A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 SER 88 88 88 SER SER A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 PHE 92 92 92 PHE PHE A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 HIS 96 96 96 HIS HIS A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 ASN 106 106 106 ASN ASN A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 ASP 108 108 108 ASP ASP A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 ILE 110 110 110 ILE ILE A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 LYS 115 115 115 LYS LYS A . n A 1 116 ALA 116 116 116 ALA ALA A . n A 1 117 LEU 117 117 117 LEU LEU A . n A 1 118 PHE 118 118 118 PHE PHE A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 PRO 120 120 120 PRO PRO A . n A 1 121 LYS 121 121 121 LYS LYS A . n A 1 122 ARG 122 122 122 ARG ARG A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 SER 124 124 124 SER SER A . n A 1 125 ILE 125 125 125 ILE ILE A . n A 1 126 ILE 126 126 126 ILE ILE A . n A 1 127 HIS 127 127 127 HIS HIS A . n A 1 128 CYS 128 128 128 CYS CYS A . n A 1 129 PRO 129 129 ? ? ? A . n A 1 130 GLY 130 130 ? ? ? A . n A 1 131 HIS 131 131 ? ? ? A . n A 1 132 GLN 132 132 ? ? ? A . n A 1 133 LYS 133 133 ? ? ? A . n A 1 134 GLY 134 134 134 GLY GLY A . n A 1 135 HIS 135 135 135 HIS HIS A . n A 1 136 SER 136 136 136 SER SER A . n A 1 137 ALA 137 137 137 ALA ALA A . n A 1 138 GLU 138 138 138 GLU GLU A . n A 1 139 ALA 139 139 139 ALA ALA A . n A 1 140 ARG 140 140 140 ARG ARG A . n A 1 141 GLY 141 141 141 GLY GLY A . n A 1 142 ASN 142 142 142 ASN ASN A . n A 1 143 ARG 143 143 143 ARG ARG A . n A 1 144 MSE 144 144 144 MSE MSE A . n A 1 145 ALA 145 145 145 ALA ALA A . n A 1 146 ASP 146 146 146 ASP ASP A . n A 1 147 GLN 147 147 147 GLN GLN A . n A 1 148 ALA 148 148 148 ALA ALA A . n A 1 149 ALA 149 149 149 ALA ALA A . n A 1 150 ARG 150 150 150 ARG ARG A . n A 1 151 LYS 151 151 151 LYS LYS A . n A 1 152 ALA 152 152 152 ALA ALA A . n A 1 153 ALA 153 153 153 ALA ALA A . n A 1 154 ILE 154 154 154 ILE ILE A . n A 1 155 THR 155 155 155 THR THR A . n A 1 156 GLU 156 156 156 GLU GLU A . n A 1 157 THR 157 157 157 THR THR A . n A 1 158 PRO 158 158 158 PRO PRO A . n A 1 159 ASP 159 159 159 ASP ASP A . n A 1 160 THR 160 160 160 THR ALA A . n A 1 161 SER 161 161 161 SER SER A . n A 1 162 THR 162 162 ? ? ? A . n A 1 163 LEU 163 163 ? ? ? A . n A 1 164 LEU 164 164 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 200 1 MG MG2 A . C 3 SO4 1 201 1 SO4 SO4 A . D 4 HOH 1 202 1 HOH WAT A . D 4 HOH 2 203 2 HOH WAT A . D 4 HOH 3 204 1 HOH WAT A . D 4 HOH 4 205 2 HOH WAT A . D 4 HOH 5 206 3 HOH WAT A . D 4 HOH 6 207 4 HOH WAT A . D 4 HOH 7 208 5 HOH WAT A . D 4 HOH 8 209 6 HOH WAT A . D 4 HOH 9 210 7 HOH WAT A . D 4 HOH 10 211 8 HOH WAT A . D 4 HOH 11 212 9 HOH WAT A . D 4 HOH 12 213 10 HOH WAT A . D 4 HOH 13 214 11 HOH WAT A . D 4 HOH 14 215 12 HOH WAT A . D 4 HOH 15 216 13 HOH WAT A . D 4 HOH 16 217 14 HOH WAT A . D 4 HOH 17 218 15 HOH WAT A . D 4 HOH 18 219 16 HOH WAT A . D 4 HOH 19 220 17 HOH WAT A . D 4 HOH 20 221 18 HOH WAT A . D 4 HOH 21 222 19 HOH WAT A . D 4 HOH 22 223 20 HOH WAT A . D 4 HOH 23 224 21 HOH WAT A . D 4 HOH 24 225 22 HOH WAT A . D 4 HOH 25 226 23 HOH WAT A . D 4 HOH 26 227 24 HOH WAT A . D 4 HOH 27 228 25 HOH WAT A . D 4 HOH 28 229 26 HOH WAT A . D 4 HOH 29 230 27 HOH WAT A . D 4 HOH 30 231 28 HOH WAT A . D 4 HOH 31 232 29 HOH WAT A . D 4 HOH 32 233 30 HOH WAT A . D 4 HOH 33 234 31 HOH WAT A . D 4 HOH 34 235 32 HOH WAT A . D 4 HOH 35 236 33 HOH WAT A . D 4 HOH 36 237 34 HOH WAT A . D 4 HOH 37 238 35 HOH WAT A . D 4 HOH 38 239 36 HOH WAT A . D 4 HOH 39 240 37 HOH WAT A . D 4 HOH 40 241 38 HOH WAT A . D 4 HOH 41 242 39 HOH WAT A . D 4 HOH 42 243 40 HOH WAT A . D 4 HOH 43 244 41 HOH WAT A . D 4 HOH 44 245 42 HOH WAT A . D 4 HOH 45 246 43 HOH WAT A . D 4 HOH 46 247 44 HOH WAT A . D 4 HOH 47 248 45 HOH WAT A . D 4 HOH 48 249 46 HOH WAT A . D 4 HOH 49 250 47 HOH WAT A . D 4 HOH 50 251 48 HOH WAT A . D 4 HOH 51 252 49 HOH WAT A . D 4 HOH 52 253 50 HOH WAT A . D 4 HOH 53 254 51 HOH WAT A . D 4 HOH 54 255 52 HOH WAT A . D 4 HOH 55 256 53 HOH WAT A . D 4 HOH 56 257 54 HOH WAT A . D 4 HOH 57 258 55 HOH WAT A . D 4 HOH 58 259 56 HOH WAT A . D 4 HOH 59 260 57 HOH WAT A . D 4 HOH 60 261 58 HOH WAT A . D 4 HOH 61 262 59 HOH WAT A . D 4 HOH 62 263 60 HOH WAT A . D 4 HOH 63 264 61 HOH WAT A . D 4 HOH 64 265 62 HOH WAT A . D 4 HOH 65 266 63 HOH WAT A . D 4 HOH 66 267 64 HOH WAT A . D 4 HOH 67 268 65 HOH WAT A . D 4 HOH 68 269 66 HOH WAT A . D 4 HOH 69 270 67 HOH WAT A . D 4 HOH 70 271 68 HOH WAT A . D 4 HOH 71 272 69 HOH WAT A . D 4 HOH 72 273 70 HOH WAT A . D 4 HOH 73 274 71 HOH WAT A . D 4 HOH 74 275 72 HOH WAT A . D 4 HOH 75 276 73 HOH WAT A . D 4 HOH 76 277 74 HOH WAT A . D 4 HOH 77 278 75 HOH WAT A . D 4 HOH 78 279 76 HOH WAT A . D 4 HOH 79 280 77 HOH WAT A . D 4 HOH 80 281 78 HOH WAT A . D 4 HOH 81 282 79 HOH WAT A . D 4 HOH 82 283 80 HOH WAT A . D 4 HOH 83 284 81 HOH WAT A . D 4 HOH 84 285 82 HOH WAT A . D 4 HOH 85 286 83 HOH WAT A . D 4 HOH 86 287 84 HOH WAT A . D 4 HOH 87 288 85 HOH WAT A . D 4 HOH 88 289 86 HOH WAT A . D 4 HOH 89 290 87 HOH WAT A . D 4 HOH 90 291 88 HOH WAT A . D 4 HOH 91 292 89 HOH WAT A . D 4 HOH 92 293 90 HOH WAT A . D 4 HOH 93 294 91 HOH WAT A . D 4 HOH 94 295 92 HOH WAT A . D 4 HOH 95 296 93 HOH WAT A . D 4 HOH 96 297 94 HOH WAT A . D 4 HOH 97 298 95 HOH WAT A . D 4 HOH 98 299 96 HOH WAT A . D 4 HOH 99 300 97 HOH WAT A . D 4 HOH 100 301 98 HOH WAT A . D 4 HOH 101 302 99 HOH WAT A . D 4 HOH 102 303 100 HOH WAT A . D 4 HOH 103 304 101 HOH WAT A . D 4 HOH 104 305 102 HOH WAT A . D 4 HOH 105 306 103 HOH WAT A . D 4 HOH 106 307 104 HOH WAT A . D 4 HOH 107 308 105 HOH WAT A . D 4 HOH 108 309 106 HOH WAT A . D 4 HOH 109 310 107 HOH WAT A . D 4 HOH 110 311 108 HOH WAT A . D 4 HOH 111 312 109 HOH WAT A . D 4 HOH 112 313 110 HOH WAT A . D 4 HOH 113 314 111 HOH WAT A . D 4 HOH 114 315 112 HOH WAT A . D 4 HOH 115 316 113 HOH WAT A . D 4 HOH 116 317 114 HOH WAT A . D 4 HOH 117 318 115 HOH WAT A . D 4 HOH 118 319 116 HOH WAT A . D 4 HOH 119 320 117 HOH WAT A . D 4 HOH 120 321 118 HOH WAT A . D 4 HOH 121 322 119 HOH WAT A . D 4 HOH 122 323 120 HOH WAT A . D 4 HOH 123 324 121 HOH WAT A . D 4 HOH 124 325 122 HOH WAT A . D 4 HOH 125 326 123 HOH WAT A . D 4 HOH 126 327 124 HOH WAT A . D 4 HOH 127 328 125 HOH WAT A . D 4 HOH 128 329 126 HOH WAT A . D 4 HOH 129 330 127 HOH WAT A . D 4 HOH 130 331 128 HOH WAT A . D 4 HOH 131 332 129 HOH WAT A . D 4 HOH 132 333 130 HOH WAT A . D 4 HOH 133 334 131 HOH WAT A . D 4 HOH 134 335 132 HOH WAT A . D 4 HOH 135 336 133 HOH WAT A . D 4 HOH 136 337 134 HOH WAT A . D 4 HOH 137 338 135 HOH WAT A . D 4 HOH 138 339 136 HOH WAT A . D 4 HOH 139 340 137 HOH WAT A . D 4 HOH 140 341 138 HOH WAT A . D 4 HOH 141 342 139 HOH WAT A . D 4 HOH 142 343 140 HOH WAT A . D 4 HOH 143 344 141 HOH WAT A . D 4 HOH 144 345 142 HOH WAT A . D 4 HOH 145 346 143 HOH WAT A . D 4 HOH 146 347 144 HOH WAT A . D 4 HOH 147 348 145 HOH WAT A . D 4 HOH 148 349 146 HOH WAT A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 76 A MSE 76 ? MET SELENOMETHIONINE 2 A MSE 144 A MSE 144 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 28 ? A ASP 28 ? 1_555 MG ? B MG . ? A MG 200 ? 1_555 OE2 A A GLU 66 ? A GLU 66 ? 1_555 110.8 ? 2 OD2 ? A ASP 28 ? A ASP 28 ? 1_555 MG ? B MG . ? A MG 200 ? 1_555 OD2 ? A ASP 87 ? A ASP 87 ? 1_555 108.1 ? 3 OE2 A A GLU 66 ? A GLU 66 ? 1_555 MG ? B MG . ? A MG 200 ? 1_555 OD2 ? A ASP 87 ? A ASP 87 ? 1_555 100.6 ? 4 OD2 ? A ASP 28 ? A ASP 28 ? 1_555 MG ? B MG . ? A MG 200 ? 1_555 OD1 ? A ASP 87 ? A ASP 87 ? 1_555 86.1 ? 5 OE2 A A GLU 66 ? A GLU 66 ? 1_555 MG ? B MG . ? A MG 200 ? 1_555 OD1 ? A ASP 87 ? A ASP 87 ? 1_555 151.3 ? 6 OD2 ? A ASP 87 ? A ASP 87 ? 1_555 MG ? B MG . ? A MG 200 ? 1_555 OD1 ? A ASP 87 ? A ASP 87 ? 1_555 51.2 ? 7 OD2 ? A ASP 28 ? A ASP 28 ? 1_555 MG ? B MG . ? A MG 200 ? 1_555 O ? D HOH . ? A HOH 202 ? 1_555 67.3 ? 8 OE2 A A GLU 66 ? A GLU 66 ? 1_555 MG ? B MG . ? A MG 200 ? 1_555 O ? D HOH . ? A HOH 202 ? 1_555 137.5 ? 9 OD2 ? A ASP 87 ? A ASP 87 ? 1_555 MG ? B MG . ? A MG 200 ? 1_555 O ? D HOH . ? A HOH 202 ? 1_555 120.8 ? 10 OD1 ? A ASP 87 ? A ASP 87 ? 1_555 MG ? B MG . ? A MG 200 ? 1_555 O ? D HOH . ? A HOH 202 ? 1_555 69.8 ? 11 OD2 ? A ASP 28 ? A ASP 28 ? 1_555 MG ? B MG . ? A MG 200 ? 1_555 O ? D HOH . ? A HOH 203 ? 1_555 75.6 ? 12 OE2 A A GLU 66 ? A GLU 66 ? 1_555 MG ? B MG . ? A MG 200 ? 1_555 O ? D HOH . ? A HOH 203 ? 1_555 76.9 ? 13 OD2 ? A ASP 87 ? A ASP 87 ? 1_555 MG ? B MG . ? A MG 200 ? 1_555 O ? D HOH . ? A HOH 203 ? 1_555 176.2 ? 14 OD1 ? A ASP 87 ? A ASP 87 ? 1_555 MG ? B MG . ? A MG 200 ? 1_555 O ? D HOH . ? A HOH 203 ? 1_555 131.0 ? 15 O ? D HOH . ? A HOH 202 ? 1_555 MG ? B MG . ? A MG 200 ? 1_555 O ? D HOH . ? A HOH 203 ? 1_555 61.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-08-29 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2023-03-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' audit_author 3 5 'Structure model' citation_author 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_ref_seq_dif 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_audit_author.name' 2 5 'Structure model' '_citation_author.name' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.value' 18 5 'Structure model' '_struct_conn.pdbx_dist_value' 19 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 20 5 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 21 5 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 22 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 34 5 'Structure model' '_struct_ref_seq_dif.details' 35 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 36 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 37 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language ADSC 'data collection' . ? 1 ? ? ? ? DENZO 'data reduction' . ? 2 ? ? ? ? SnB phasing . ? 3 ? ? ? ? CNS refinement 1.1 ? 4 ? ? ? ? SCALEPACK 'data scaling' . ? 5 ? ? ? ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A HIS 7 ? CB ? A HIS 7 CB 2 1 Y 1 A HIS 7 ? CG ? A HIS 7 CG 3 1 Y 1 A HIS 7 ? ND1 ? A HIS 7 ND1 4 1 Y 1 A HIS 7 ? CD2 ? A HIS 7 CD2 5 1 Y 1 A HIS 7 ? CE1 ? A HIS 7 CE1 6 1 Y 1 A HIS 7 ? NE2 ? A HIS 7 NE2 7 1 Y 1 A THR 160 ? OG1 ? A THR 160 OG1 8 1 Y 1 A THR 160 ? CG2 ? A THR 160 CG2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1 ? A GLY 1 2 1 Y 1 A ILE 2 ? A ILE 2 3 1 Y 1 A LEU 3 ? A LEU 3 4 1 Y 1 A ALA 4 ? A ALA 4 5 1 Y 1 A GLU 5 ? A GLU 5 6 1 Y 1 A ALA 6 ? A ALA 6 7 1 Y 1 A PRO 129 ? A PRO 129 8 1 Y 1 A GLY 130 ? A GLY 130 9 1 Y 1 A HIS 131 ? A HIS 131 10 1 Y 1 A GLN 132 ? A GLN 132 11 1 Y 1 A LYS 133 ? A LYS 133 12 1 Y 1 A THR 162 ? A THR 162 13 1 Y 1 A LEU 163 ? A LEU 163 14 1 Y 1 A LEU 164 ? A LEU 164 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'SULFATE ION' SO4 4 water HOH #