data_2HBJ # _entry.id 2HBJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2HBJ pdb_00002hbj 10.2210/pdb2hbj/pdb RCSB RCSB038162 ? ? WWPDB D_1000038162 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2HBK 'Rrp6p in complex with Mn' unspecified PDB 2HBL 'Rrp6p in complex with Mn, Zn, and AMP' unspecified PDB 2HBM 'Rrp6p in complex with Mn, Zn, and UMP' unspecified # _pdbx_database_status.entry_id 2HBJ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2006-06-14 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Midtgaard, S.F.' 1 'Assenholt, J.' 2 'Jonstrup, A.T.' 3 'Van, L.B.' 4 'Jensen, T.H.' 5 'Brodersen, D.E.' 6 # _citation.id primary _citation.title 'Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain.' _citation.journal_abbrev Proc.Natl.Acad.Sci.Usa _citation.journal_volume 103 _citation.page_first 11898 _citation.page_last 11903 _citation.year 2006 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16882719 _citation.pdbx_database_id_DOI 10.1073/pnas.0604731103 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Midtgaard, S.F.' 1 ? primary 'Assenholt, J.' 2 ? primary 'Jonstrup, A.T.' 3 ? primary 'Van, L.B.' 4 ? primary 'Jensen, T.H.' 5 ? primary 'Brodersen, D.E.' 6 ? # _cell.length_a 110.135 _cell.length_b 110.135 _cell.length_c 80.169 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.entry_id 2HBJ _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.entry_id 2HBJ _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 152 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Exosome complex exonuclease RRP6' 47675.125 1 3.1.13.- Y361A 'Rrp6p central fragment, residues 129-536' ? 2 water nat water 18.015 201 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Ribosomal RNA- processing protein 6' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GMVEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEIDHQEYSPEILQIREEIPSK SWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSI VKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADT HFLLNIYDQLRNKLIESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESPWKILMYQYNIPPEREVLVRELY QWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLIRDALRNIKNTNEEATPIPSSE TKADGILLET ; _entity_poly.pdbx_seq_one_letter_code_can ;GMVEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEIDHQEYSPEILQIREEIPSK SWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSI VKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADT HFLLNIYDQLRNKLIESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESPWKILMYQYNIPPEREVLVRELY QWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLIRDALRNIKNTNEEATPIPSSE TKADGILLET ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MET n 1 3 VAL n 1 4 GLU n 1 5 LYS n 1 6 PRO n 1 7 GLN n 1 8 LEU n 1 9 LYS n 1 10 PHE n 1 11 LYS n 1 12 SER n 1 13 PRO n 1 14 ILE n 1 15 ASP n 1 16 ASN n 1 17 SER n 1 18 GLU n 1 19 SER n 1 20 HIS n 1 21 PRO n 1 22 PHE n 1 23 ILE n 1 24 PRO n 1 25 LEU n 1 26 LEU n 1 27 LYS n 1 28 GLU n 1 29 LYS n 1 30 PRO n 1 31 ASN n 1 32 ALA n 1 33 LEU n 1 34 LYS n 1 35 PRO n 1 36 LEU n 1 37 SER n 1 38 GLU n 1 39 SER n 1 40 LEU n 1 41 ARG n 1 42 LEU n 1 43 VAL n 1 44 ASP n 1 45 ASP n 1 46 ASP n 1 47 GLU n 1 48 ASN n 1 49 ASN n 1 50 PRO n 1 51 SER n 1 52 HIS n 1 53 TYR n 1 54 PRO n 1 55 HIS n 1 56 PRO n 1 57 TYR n 1 58 GLU n 1 59 TYR n 1 60 GLU n 1 61 ILE n 1 62 ASP n 1 63 HIS n 1 64 GLN n 1 65 GLU n 1 66 TYR n 1 67 SER n 1 68 PRO n 1 69 GLU n 1 70 ILE n 1 71 LEU n 1 72 GLN n 1 73 ILE n 1 74 ARG n 1 75 GLU n 1 76 GLU n 1 77 ILE n 1 78 PRO n 1 79 SER n 1 80 LYS n 1 81 SER n 1 82 TRP n 1 83 ASP n 1 84 ASP n 1 85 SER n 1 86 VAL n 1 87 PRO n 1 88 ILE n 1 89 TRP n 1 90 VAL n 1 91 ASP n 1 92 THR n 1 93 SER n 1 94 THR n 1 95 GLU n 1 96 LEU n 1 97 GLU n 1 98 SER n 1 99 MET n 1 100 LEU n 1 101 GLU n 1 102 ASP n 1 103 LEU n 1 104 LYS n 1 105 ASN n 1 106 THR n 1 107 LYS n 1 108 GLU n 1 109 ILE n 1 110 ALA n 1 111 VAL n 1 112 ASP n 1 113 LEU n 1 114 GLU n 1 115 HIS n 1 116 HIS n 1 117 ASP n 1 118 TYR n 1 119 ARG n 1 120 SER n 1 121 TYR n 1 122 TYR n 1 123 GLY n 1 124 ILE n 1 125 VAL n 1 126 CYS n 1 127 LEU n 1 128 MET n 1 129 GLN n 1 130 ILE n 1 131 SER n 1 132 THR n 1 133 ARG n 1 134 GLU n 1 135 ARG n 1 136 ASP n 1 137 TYR n 1 138 LEU n 1 139 VAL n 1 140 ASP n 1 141 THR n 1 142 LEU n 1 143 LYS n 1 144 LEU n 1 145 ARG n 1 146 GLU n 1 147 ASN n 1 148 LEU n 1 149 HIS n 1 150 ILE n 1 151 LEU n 1 152 ASN n 1 153 GLU n 1 154 VAL n 1 155 PHE n 1 156 THR n 1 157 ASN n 1 158 PRO n 1 159 SER n 1 160 ILE n 1 161 VAL n 1 162 LYS n 1 163 VAL n 1 164 PHE n 1 165 HIS n 1 166 GLY n 1 167 ALA n 1 168 PHE n 1 169 MET n 1 170 ASP n 1 171 ILE n 1 172 ILE n 1 173 TRP n 1 174 LEU n 1 175 GLN n 1 176 ARG n 1 177 ASP n 1 178 LEU n 1 179 GLY n 1 180 LEU n 1 181 TYR n 1 182 VAL n 1 183 VAL n 1 184 GLY n 1 185 LEU n 1 186 PHE n 1 187 ASP n 1 188 THR n 1 189 TYR n 1 190 HIS n 1 191 ALA n 1 192 SER n 1 193 LYS n 1 194 ALA n 1 195 ILE n 1 196 GLY n 1 197 LEU n 1 198 PRO n 1 199 ARG n 1 200 HIS n 1 201 SER n 1 202 LEU n 1 203 ALA n 1 204 TYR n 1 205 LEU n 1 206 LEU n 1 207 GLU n 1 208 ASN n 1 209 PHE n 1 210 ALA n 1 211 ASN n 1 212 PHE n 1 213 LYS n 1 214 THR n 1 215 SER n 1 216 LYS n 1 217 LYS n 1 218 TYR n 1 219 GLN n 1 220 LEU n 1 221 ALA n 1 222 ASP n 1 223 TRP n 1 224 ARG n 1 225 ILE n 1 226 ARG n 1 227 PRO n 1 228 LEU n 1 229 SER n 1 230 LYS n 1 231 PRO n 1 232 MET n 1 233 THR n 1 234 ALA n 1 235 ALA n 1 236 ALA n 1 237 ARG n 1 238 ALA n 1 239 ASP n 1 240 THR n 1 241 HIS n 1 242 PHE n 1 243 LEU n 1 244 LEU n 1 245 ASN n 1 246 ILE n 1 247 TYR n 1 248 ASP n 1 249 GLN n 1 250 LEU n 1 251 ARG n 1 252 ASN n 1 253 LYS n 1 254 LEU n 1 255 ILE n 1 256 GLU n 1 257 SER n 1 258 ASN n 1 259 LYS n 1 260 LEU n 1 261 ALA n 1 262 GLY n 1 263 VAL n 1 264 LEU n 1 265 TYR n 1 266 GLU n 1 267 SER n 1 268 ARG n 1 269 ASN n 1 270 VAL n 1 271 ALA n 1 272 LYS n 1 273 ARG n 1 274 ARG n 1 275 PHE n 1 276 GLU n 1 277 TYR n 1 278 SER n 1 279 LYS n 1 280 TYR n 1 281 ARG n 1 282 PRO n 1 283 LEU n 1 284 THR n 1 285 PRO n 1 286 SER n 1 287 SER n 1 288 GLU n 1 289 VAL n 1 290 TYR n 1 291 SER n 1 292 PRO n 1 293 ILE n 1 294 GLU n 1 295 LYS n 1 296 GLU n 1 297 SER n 1 298 PRO n 1 299 TRP n 1 300 LYS n 1 301 ILE n 1 302 LEU n 1 303 MET n 1 304 TYR n 1 305 GLN n 1 306 TYR n 1 307 ASN n 1 308 ILE n 1 309 PRO n 1 310 PRO n 1 311 GLU n 1 312 ARG n 1 313 GLU n 1 314 VAL n 1 315 LEU n 1 316 VAL n 1 317 ARG n 1 318 GLU n 1 319 LEU n 1 320 TYR n 1 321 GLN n 1 322 TRP n 1 323 ARG n 1 324 ASP n 1 325 LEU n 1 326 ILE n 1 327 ALA n 1 328 ARG n 1 329 ARG n 1 330 ASP n 1 331 ASP n 1 332 GLU n 1 333 SER n 1 334 PRO n 1 335 ARG n 1 336 PHE n 1 337 VAL n 1 338 MET n 1 339 PRO n 1 340 ASN n 1 341 GLN n 1 342 LEU n 1 343 LEU n 1 344 ALA n 1 345 ALA n 1 346 LEU n 1 347 VAL n 1 348 ALA n 1 349 TYR n 1 350 THR n 1 351 PRO n 1 352 THR n 1 353 ASP n 1 354 VAL n 1 355 ILE n 1 356 GLY n 1 357 VAL n 1 358 VAL n 1 359 SER n 1 360 LEU n 1 361 THR n 1 362 ASN n 1 363 GLY n 1 364 VAL n 1 365 THR n 1 366 GLU n 1 367 HIS n 1 368 VAL n 1 369 ARG n 1 370 GLN n 1 371 ASN n 1 372 ALA n 1 373 LYS n 1 374 LEU n 1 375 LEU n 1 376 ALA n 1 377 ASN n 1 378 LEU n 1 379 ILE n 1 380 ARG n 1 381 ASP n 1 382 ALA n 1 383 LEU n 1 384 ARG n 1 385 ASN n 1 386 ILE n 1 387 LYS n 1 388 ASN n 1 389 THR n 1 390 ASN n 1 391 GLU n 1 392 GLU n 1 393 ALA n 1 394 THR n 1 395 PRO n 1 396 ILE n 1 397 PRO n 1 398 SER n 1 399 SER n 1 400 GLU n 1 401 THR n 1 402 LYS n 1 403 ALA n 1 404 ASP n 1 405 GLY n 1 406 ILE n 1 407 LEU n 1 408 LEU n 1 409 GLU n 1 410 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ;baker's yeast ; _entity_src_gen.gene_src_genus Saccharomyces _entity_src_gen.pdbx_gene_src_gene RRP6 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 Rosetta' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET30 Ek/LIC' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RRP6_YEAST _struct_ref.pdbx_db_accession Q12149 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEIDHQEYSPEILQIREEIPSKSW DDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVK VFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHF LLNIYDQLRNKLIESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESPWKILMYQYNIPPEREVLVRELYQW RDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLIRDALRNIKNTNEEATPIPSSETK ADGILLET ; _struct_ref.pdbx_align_begin 129 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2HBJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 410 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q12149 _struct_ref_seq.db_align_beg 129 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 536 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 129 _struct_ref_seq.pdbx_auth_seq_align_end 536 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2HBJ GLY A 1 ? UNP Q12149 ? ? 'cloning artifact' 127 1 1 2HBJ MET A 2 ? UNP Q12149 ? ? 'cloning artifact' 128 2 1 2HBJ ALA A 235 ? UNP Q12149 TYR 361 'engineered mutation' 361 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2HBJ _exptl.crystals_number 2 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.94 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 58.20 _exptl_crystal.description 'Both MAD and MIRAS were used for structure determination.' _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '12-14% PEG 20000, 0.1M Mes or Hepes, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD MARRESEARCH 2005-06-10 'Si mirrors' 2 CCD MARRESEARCH 2005-06-10 'Si mirrors' # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_scattering_type 1 1 MAD Si M x-ray 2 1 'SINGLE WAVELENGTH' Si M x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.8793 1.0 2 1.072 1.0 3 1.071 1.0 4 1.5218 1.0 5 0.8048 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline 1 SYNCHROTRON 'EMBL/DESY, HAMBURG BEAMLINE BW7A' ? '0.8793, 1.072, 1.071, 1.5218' 'EMBL/DESY, HAMBURG' BW7A 2 SYNCHROTRON 'EMBL/DESY, HAMBURG BEAMLINE X13' ? 0.8048 'EMBL/DESY, HAMBURG' X13 # _reflns.entry_id 2HBJ _reflns.d_resolution_high 2.100 _reflns.d_resolution_low 55.06 _reflns.number_obs 33892 _reflns.pdbx_Rmerge_I_obs 0.058 _reflns.pdbx_netI_over_sigmaI 12.700 _reflns.pdbx_chi_squared 0.935 _reflns.pdbx_redundancy 4.900 _reflns.percent_possible_obs 98.500 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.number_all 33892 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 40.822 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.18 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs 3087 _reflns_shell.Rmerge_I_obs 0.503 _reflns_shell.meanI_over_sigI_obs 2.6 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 1.135 _reflns_shell.pdbx_redundancy 3.60 _reflns_shell.percent_possible_obs 91.30 _reflns_shell.number_unique_all 3087 _reflns_shell.percent_possible_all 91.3 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.ls_d_res_high 2.100 _refine.ls_d_res_low 55.06 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 93.600 _refine.ls_number_reflns_obs 30976 _refine.ls_R_factor_R_work 0.232 _refine.ls_R_factor_R_free 0.292 _refine.ls_percent_reflns_R_free 9.300 _refine.ls_number_reflns_R_free 3087 _refine.B_iso_mean 54.970 _refine.solvent_model_param_bsol 64.975 _refine.aniso_B[1][1] 3.075 _refine.aniso_B[2][2] 3.075 _refine.aniso_B[3][3] -6.151 _refine.aniso_B[1][2] 1.755 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.pdbx_method_to_determine_struct MAD _refine.overall_FOM_work_R_set 0.776 _refine.entry_id 2HBJ _refine.pdbx_ls_sigma_I 0.0 _refine.ls_number_reflns_all 30976 _refine.ls_R_factor_all 0.239 _refine.ls_R_factor_obs 0.239 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ISOTROPIC _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2HBJ _refine_analyze.Luzzati_coordinate_error_obs 0.32 _refine_analyze.Luzzati_sigma_a_obs 0.30 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.40 _refine_analyze.Luzzati_sigma_a_free 0.33 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3216 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 201 _refine_hist.number_atoms_total 3417 _refine_hist.d_res_high 2.100 _refine_hist.d_res_low 55.06 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_angle_deg 1.34773 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d 0.008005 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.24403 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.91265 ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.100 2.110 50 . 552 . 0.395 0.387 . 62 . . 614 . 'X-RAY DIFFRACTION' 2.110 2.130 50 . 550 . 0.34 0.312 . 69 . . 619 . 'X-RAY DIFFRACTION' 2.130 2.140 50 . 537 . 0.323 0.418 . 60 . . 597 . 'X-RAY DIFFRACTION' 2.140 2.160 50 . 536 . 0.323 0.356 . 63 . . 599 . 'X-RAY DIFFRACTION' 2.160 2.180 50 . 483 . 0.297 0.354 . 51 . . 534 . 'X-RAY DIFFRACTION' 2.180 2.190 50 . 468 . 0.302 0.336 . 50 . . 518 . 'X-RAY DIFFRACTION' 2.190 2.210 50 . 473 . 0.322 0.351 . 45 . . 518 . 'X-RAY DIFFRACTION' 2.210 2.230 50 . 551 . 0.293 0.318 . 47 . . 598 . 'X-RAY DIFFRACTION' 2.230 2.240 50 . 592 . 0.39 0.386 . 57 . . 649 . 'X-RAY DIFFRACTION' 2.240 2.260 50 . 569 . 0.308 0.346 . 63 . . 632 . 'X-RAY DIFFRACTION' 2.260 2.280 50 . 476 . 0.317 0.337 . 46 . . 522 . 'X-RAY DIFFRACTION' 2.280 2.300 50 . 441 . 0.349 0.454 . 44 . . 485 . 'X-RAY DIFFRACTION' 2.300 2.320 50 . 465 . 0.34 0.455 . 50 . . 515 . 'X-RAY DIFFRACTION' 2.320 2.340 50 . 533 . 0.325 0.386 . 63 . . 596 . 'X-RAY DIFFRACTION' 2.340 2.370 50 . 483 . 0.287 0.335 . 53 . . 536 . 'X-RAY DIFFRACTION' 2.370 2.390 50 . 532 . 0.297 0.356 . 66 . . 598 . 'X-RAY DIFFRACTION' 2.390 2.410 50 . 531 . 0.266 0.345 . 55 . . 586 . 'X-RAY DIFFRACTION' 2.410 2.440 50 . 554 . 0.275 0.372 . 67 . . 621 . 'X-RAY DIFFRACTION' 2.440 2.460 50 . 538 . 0.263 0.337 . 60 . . 598 . 'X-RAY DIFFRACTION' 2.460 2.490 50 . 562 . 0.255 0.309 . 57 . . 619 . 'X-RAY DIFFRACTION' 2.490 2.520 50 . 558 . 0.238 0.3 . 54 . . 612 . 'X-RAY DIFFRACTION' 2.520 2.550 50 . 531 . 0.265 0.35 . 51 . . 582 . 'X-RAY DIFFRACTION' 2.550 2.580 50 . 569 . 0.262 0.338 . 79 . . 648 . 'X-RAY DIFFRACTION' 2.580 2.610 50 . 553 . 0.235 0.299 . 66 . . 619 . 'X-RAY DIFFRACTION' 2.610 2.650 50 . 539 . 0.269 0.301 . 78 . . 617 . 'X-RAY DIFFRACTION' 2.650 2.680 50 . 570 . 0.243 0.34 . 64 . . 634 . 'X-RAY DIFFRACTION' 2.680 2.720 50 . 570 . 0.247 0.352 . 54 . . 624 . 'X-RAY DIFFRACTION' 2.720 2.760 50 . 572 . 0.277 0.33 . 57 . . 629 . 'X-RAY DIFFRACTION' 2.760 2.800 50 . 572 . 0.263 0.349 . 50 . . 622 . 'X-RAY DIFFRACTION' 2.800 2.850 50 . 580 . 0.244 0.332 . 61 . . 641 . 'X-RAY DIFFRACTION' 2.850 2.900 50 . 572 . 0.235 0.308 . 74 . . 646 . 'X-RAY DIFFRACTION' 2.900 2.950 50 . 554 . 0.244 0.341 . 72 . . 626 . 'X-RAY DIFFRACTION' 2.950 3.010 50 . 570 . 0.24 0.31 . 68 . . 638 . 'X-RAY DIFFRACTION' 3.010 3.070 50 . 597 . 0.257 0.286 . 52 . . 649 . 'X-RAY DIFFRACTION' 3.070 3.140 50 . 581 . 0.243 0.281 . 68 . . 649 . 'X-RAY DIFFRACTION' 3.140 3.210 50 . 577 . 0.253 0.349 . 57 . . 634 . 'X-RAY DIFFRACTION' 3.210 3.290 50 . 588 . 0.257 0.342 . 84 . . 672 . 'X-RAY DIFFRACTION' 3.290 3.380 50 . 584 . 0.253 0.3 . 57 . . 641 . 'X-RAY DIFFRACTION' 3.380 3.480 50 . 598 . 0.258 0.282 . 68 . . 666 . 'X-RAY DIFFRACTION' 3.480 3.590 50 . 570 . 0.254 0.311 . 86 . . 656 . 'X-RAY DIFFRACTION' 3.590 3.720 50 . 599 . 0.237 0.276 . 62 . . 661 . 'X-RAY DIFFRACTION' 3.720 3.870 50 . 588 . 0.226 0.291 . 80 . . 668 . 'X-RAY DIFFRACTION' 3.870 4.040 50 . 601 . 0.203 0.237 . 59 . . 660 . 'X-RAY DIFFRACTION' 4.040 4.260 50 . 605 . 0.197 0.271 . 70 . . 675 . 'X-RAY DIFFRACTION' 4.260 4.520 50 . 605 . 0.16 0.194 . 58 . . 663 . 'X-RAY DIFFRACTION' 4.520 4.870 50 . 604 . 0.16 0.196 . 65 . . 669 . 'X-RAY DIFFRACTION' 4.870 5.360 50 . 602 . 0.179 0.214 . 68 . . 670 . 'X-RAY DIFFRACTION' 5.360 6.140 50 . 636 . 0.223 0.32 . 59 . . 695 . 'X-RAY DIFFRACTION' 6.140 7.740 50 . 615 . 0.19 0.284 . 68 . . 683 . 'X-RAY DIFFRACTION' 7.740 500.010 50 . 603 . 0.177 0.253 . 70 . . 673 . 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param ? 'X-RAY DIFFRACTION' 2 water_rep.param ? 'X-RAY DIFFRACTION' 3 ion.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 2HBJ _struct.title 'Structure of the yeast nuclear exosome component, Rrp6p, reveals an interplay between the active site and the HRDC domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2HBJ _struct_keywords.pdbx_keywords 'HYDROLASE, GENE REGULATION' _struct_keywords.text 'exosome, RNA metabolism, RNA surveillance, RNA processing, HYDROLASE, GENE REGULATION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details 'The biological assembly is the monomer present in the asymmetric unit.' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 5 ? PHE A 10 ? LYS A 131 PHE A 136 5 ? 6 HELX_P HELX_P2 2 PRO A 35 ? LEU A 40 ? PRO A 161 LEU A 166 1 ? 6 HELX_P HELX_P3 3 TYR A 57 ? GLN A 64 ? TYR A 183 GLN A 190 1 ? 8 HELX_P HELX_P4 4 SER A 67 ? LEU A 71 ? SER A 193 LEU A 197 5 ? 5 HELX_P HELX_P5 5 SER A 81 ? SER A 85 ? SER A 207 SER A 211 5 ? 5 HELX_P HELX_P6 6 THR A 92 ? LYS A 104 ? THR A 218 LYS A 230 1 ? 13 HELX_P HELX_P7 7 ASN A 147 ? ILE A 150 ? ASN A 273 ILE A 276 5 ? 4 HELX_P HELX_P8 8 LEU A 151 ? THR A 156 ? LEU A 277 THR A 282 1 ? 6 HELX_P HELX_P9 9 ALA A 167 ? GLY A 179 ? ALA A 293 GLY A 305 1 ? 13 HELX_P HELX_P10 10 THR A 188 ? GLY A 196 ? THR A 314 GLY A 322 1 ? 9 HELX_P HELX_P11 11 SER A 201 ? ALA A 210 ? SER A 327 ALA A 336 1 ? 10 HELX_P HELX_P12 12 SER A 229 ? PHE A 242 ? SER A 355 PHE A 368 1 ? 14 HELX_P HELX_P13 13 PHE A 242 ? SER A 257 ? PHE A 368 SER A 383 1 ? 16 HELX_P HELX_P14 14 LYS A 259 ? ARG A 273 ? LYS A 385 ARG A 399 1 ? 15 HELX_P HELX_P15 15 TYR A 277 ? ARG A 281 ? TYR A 403 ARG A 407 5 ? 5 HELX_P HELX_P16 16 ARG A 312 ? ASP A 331 ? ARG A 438 ASP A 457 1 ? 20 HELX_P HELX_P17 17 SER A 333 ? MET A 338 ? SER A 459 MET A 464 1 ? 6 HELX_P HELX_P18 18 PRO A 339 ? THR A 350 ? PRO A 465 THR A 476 1 ? 12 HELX_P HELX_P19 19 ASP A 353 ? SER A 359 ? ASP A 479 SER A 485 1 ? 7 HELX_P HELX_P20 20 THR A 365 ? ASN A 371 ? THR A 491 ASN A 497 1 ? 7 HELX_P HELX_P21 21 ASN A 371 ? ASN A 390 ? ASN A 497 ASN A 516 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ARG _struct_mon_prot_cis.label_seq_id 226 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ARG _struct_mon_prot_cis.auth_seq_id 352 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 227 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 353 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.01 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel A 5 6 ? parallel B 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 88 ? VAL A 90 ? ILE A 214 VAL A 216 A 2 ASP A 136 ? ASP A 140 ? ASP A 262 ASP A 266 A 3 ILE A 124 ? SER A 131 ? ILE A 250 SER A 257 A 4 GLU A 108 ? HIS A 116 ? GLU A 234 HIS A 242 A 5 VAL A 161 ? PHE A 164 ? VAL A 287 PHE A 290 A 6 LEU A 185 ? ASP A 187 ? LEU A 311 ASP A 313 B 1 ARG A 274 ? PHE A 275 ? ARG A 400 PHE A 401 B 2 VAL A 289 ? TYR A 290 ? VAL A 415 TYR A 416 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 88 ? N ILE A 214 O ASP A 136 ? O ASP A 262 A 2 3 O TYR A 137 ? O TYR A 263 N ILE A 130 ? N ILE A 256 A 3 4 O GLN A 129 ? O GLN A 255 N ASP A 112 ? N ASP A 238 A 4 5 N ILE A 109 ? N ILE A 235 O VAL A 163 ? O VAL A 289 A 5 6 N LYS A 162 ? N LYS A 288 O PHE A 186 ? O PHE A 312 B 1 2 N ARG A 274 ? N ARG A 400 O TYR A 290 ? O TYR A 416 # _atom_sites.entry_id 2HBJ _atom_sites.fract_transf_matrix[1][1] 0.009080 _atom_sites.fract_transf_matrix[1][2] 0.005242 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010484 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012474 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 127 127 GLY GLY A . n A 1 2 MET 2 128 128 MET MET A . n A 1 3 VAL 3 129 129 VAL VAL A . n A 1 4 GLU 4 130 130 GLU GLU A . n A 1 5 LYS 5 131 131 LYS LYS A . n A 1 6 PRO 6 132 132 PRO PRO A . n A 1 7 GLN 7 133 133 GLN GLN A . n A 1 8 LEU 8 134 134 LEU LEU A . n A 1 9 LYS 9 135 135 LYS LYS A . n A 1 10 PHE 10 136 136 PHE PHE A . n A 1 11 LYS 11 137 137 LYS LYS A . n A 1 12 SER 12 138 138 SER SER A . n A 1 13 PRO 13 139 139 PRO PRO A . n A 1 14 ILE 14 140 140 ILE ILE A . n A 1 15 ASP 15 141 141 ASP ASP A . n A 1 16 ASN 16 142 142 ASN ASN A . n A 1 17 SER 17 143 143 SER SER A . n A 1 18 GLU 18 144 144 GLU GLU A . n A 1 19 SER 19 145 145 SER SER A . n A 1 20 HIS 20 146 146 HIS HIS A . n A 1 21 PRO 21 147 147 PRO PRO A . n A 1 22 PHE 22 148 148 PHE PHE A . n A 1 23 ILE 23 149 149 ILE ILE A . n A 1 24 PRO 24 150 150 PRO PRO A . n A 1 25 LEU 25 151 151 LEU LEU A . n A 1 26 LEU 26 152 152 LEU LEU A . n A 1 27 LYS 27 153 153 LYS LYS A . n A 1 28 GLU 28 154 154 GLU GLU A . n A 1 29 LYS 29 155 155 LYS LYS A . n A 1 30 PRO 30 156 156 PRO PRO A . n A 1 31 ASN 31 157 157 ASN ASN A . n A 1 32 ALA 32 158 158 ALA ALA A . n A 1 33 LEU 33 159 159 LEU LEU A . n A 1 34 LYS 34 160 160 LYS LYS A . n A 1 35 PRO 35 161 161 PRO PRO A . n A 1 36 LEU 36 162 162 LEU LEU A . n A 1 37 SER 37 163 163 SER SER A . n A 1 38 GLU 38 164 164 GLU GLU A . n A 1 39 SER 39 165 165 SER SER A . n A 1 40 LEU 40 166 166 LEU LEU A . n A 1 41 ARG 41 167 167 ARG ARG A . n A 1 42 LEU 42 168 168 LEU LEU A . n A 1 43 VAL 43 169 169 VAL VAL A . n A 1 44 ASP 44 170 170 ASP ASP A . n A 1 45 ASP 45 171 171 ASP ASP A . n A 1 46 ASP 46 172 172 ASP ASP A . n A 1 47 GLU 47 173 173 GLU GLU A . n A 1 48 ASN 48 174 174 ASN ASN A . n A 1 49 ASN 49 175 175 ASN ASN A . n A 1 50 PRO 50 176 176 PRO PRO A . n A 1 51 SER 51 177 177 SER SER A . n A 1 52 HIS 52 178 178 HIS HIS A . n A 1 53 TYR 53 179 179 TYR TYR A . n A 1 54 PRO 54 180 180 PRO PRO A . n A 1 55 HIS 55 181 181 HIS HIS A . n A 1 56 PRO 56 182 182 PRO PRO A . n A 1 57 TYR 57 183 183 TYR TYR A . n A 1 58 GLU 58 184 184 GLU GLU A . n A 1 59 TYR 59 185 185 TYR TYR A . n A 1 60 GLU 60 186 186 GLU GLU A . n A 1 61 ILE 61 187 187 ILE ILE A . n A 1 62 ASP 62 188 188 ASP ASP A . n A 1 63 HIS 63 189 189 HIS HIS A . n A 1 64 GLN 64 190 190 GLN GLN A . n A 1 65 GLU 65 191 191 GLU GLU A . n A 1 66 TYR 66 192 192 TYR TYR A . n A 1 67 SER 67 193 193 SER SER A . n A 1 68 PRO 68 194 194 PRO PRO A . n A 1 69 GLU 69 195 195 GLU GLU A . n A 1 70 ILE 70 196 196 ILE ILE A . n A 1 71 LEU 71 197 197 LEU LEU A . n A 1 72 GLN 72 198 198 GLN GLN A . n A 1 73 ILE 73 199 199 ILE ILE A . n A 1 74 ARG 74 200 200 ARG ARG A . n A 1 75 GLU 75 201 201 GLU GLU A . n A 1 76 GLU 76 202 202 GLU GLU A . n A 1 77 ILE 77 203 203 ILE ILE A . n A 1 78 PRO 78 204 204 PRO PRO A . n A 1 79 SER 79 205 205 SER SER A . n A 1 80 LYS 80 206 206 LYS LYS A . n A 1 81 SER 81 207 207 SER SER A . n A 1 82 TRP 82 208 208 TRP TRP A . n A 1 83 ASP 83 209 209 ASP ASP A . n A 1 84 ASP 84 210 210 ASP ASP A . n A 1 85 SER 85 211 211 SER SER A . n A 1 86 VAL 86 212 212 VAL VAL A . n A 1 87 PRO 87 213 213 PRO PRO A . n A 1 88 ILE 88 214 214 ILE ILE A . n A 1 89 TRP 89 215 215 TRP TRP A . n A 1 90 VAL 90 216 216 VAL VAL A . n A 1 91 ASP 91 217 217 ASP ASP A . n A 1 92 THR 92 218 218 THR THR A . n A 1 93 SER 93 219 219 SER SER A . n A 1 94 THR 94 220 220 THR THR A . n A 1 95 GLU 95 221 221 GLU GLU A . n A 1 96 LEU 96 222 222 LEU LEU A . n A 1 97 GLU 97 223 223 GLU GLU A . n A 1 98 SER 98 224 224 SER SER A . n A 1 99 MET 99 225 225 MET MET A . n A 1 100 LEU 100 226 226 LEU LEU A . n A 1 101 GLU 101 227 227 GLU GLU A . n A 1 102 ASP 102 228 228 ASP ASP A . n A 1 103 LEU 103 229 229 LEU LEU A . n A 1 104 LYS 104 230 230 LYS LYS A . n A 1 105 ASN 105 231 231 ASN ASN A . n A 1 106 THR 106 232 232 THR THR A . n A 1 107 LYS 107 233 233 LYS LYS A . n A 1 108 GLU 108 234 234 GLU GLU A . n A 1 109 ILE 109 235 235 ILE ILE A . n A 1 110 ALA 110 236 236 ALA ALA A . n A 1 111 VAL 111 237 237 VAL VAL A . n A 1 112 ASP 112 238 238 ASP ASP A . n A 1 113 LEU 113 239 239 LEU LEU A . n A 1 114 GLU 114 240 240 GLU GLU A . n A 1 115 HIS 115 241 241 HIS HIS A . n A 1 116 HIS 116 242 242 HIS HIS A . n A 1 117 ASP 117 243 243 ASP ASP A . n A 1 118 TYR 118 244 244 TYR TYR A . n A 1 119 ARG 119 245 245 ARG ARG A . n A 1 120 SER 120 246 246 SER SER A . n A 1 121 TYR 121 247 247 TYR TYR A . n A 1 122 TYR 122 248 248 TYR TYR A . n A 1 123 GLY 123 249 249 GLY GLY A . n A 1 124 ILE 124 250 250 ILE ILE A . n A 1 125 VAL 125 251 251 VAL VAL A . n A 1 126 CYS 126 252 252 CYS CYS A . n A 1 127 LEU 127 253 253 LEU LEU A . n A 1 128 MET 128 254 254 MET MET A . n A 1 129 GLN 129 255 255 GLN GLN A . n A 1 130 ILE 130 256 256 ILE ILE A . n A 1 131 SER 131 257 257 SER SER A . n A 1 132 THR 132 258 258 THR THR A . n A 1 133 ARG 133 259 259 ARG ARG A . n A 1 134 GLU 134 260 260 GLU GLU A . n A 1 135 ARG 135 261 261 ARG ARG A . n A 1 136 ASP 136 262 262 ASP ASP A . n A 1 137 TYR 137 263 263 TYR TYR A . n A 1 138 LEU 138 264 264 LEU LEU A . n A 1 139 VAL 139 265 265 VAL VAL A . n A 1 140 ASP 140 266 266 ASP ASP A . n A 1 141 THR 141 267 267 THR THR A . n A 1 142 LEU 142 268 268 LEU LEU A . n A 1 143 LYS 143 269 269 LYS LYS A . n A 1 144 LEU 144 270 270 LEU LEU A . n A 1 145 ARG 145 271 271 ARG ARG A . n A 1 146 GLU 146 272 272 GLU GLU A . n A 1 147 ASN 147 273 273 ASN ASN A . n A 1 148 LEU 148 274 274 LEU LEU A . n A 1 149 HIS 149 275 275 HIS HIS A . n A 1 150 ILE 150 276 276 ILE ILE A . n A 1 151 LEU 151 277 277 LEU LEU A . n A 1 152 ASN 152 278 278 ASN ASN A . n A 1 153 GLU 153 279 279 GLU GLU A . n A 1 154 VAL 154 280 280 VAL VAL A . n A 1 155 PHE 155 281 281 PHE PHE A . n A 1 156 THR 156 282 282 THR THR A . n A 1 157 ASN 157 283 283 ASN ASN A . n A 1 158 PRO 158 284 284 PRO PRO A . n A 1 159 SER 159 285 285 SER SER A . n A 1 160 ILE 160 286 286 ILE ILE A . n A 1 161 VAL 161 287 287 VAL VAL A . n A 1 162 LYS 162 288 288 LYS LYS A . n A 1 163 VAL 163 289 289 VAL VAL A . n A 1 164 PHE 164 290 290 PHE PHE A . n A 1 165 HIS 165 291 291 HIS HIS A . n A 1 166 GLY 166 292 292 GLY GLY A . n A 1 167 ALA 167 293 293 ALA ALA A . n A 1 168 PHE 168 294 294 PHE PHE A . n A 1 169 MET 169 295 295 MET MET A . n A 1 170 ASP 170 296 296 ASP ASP A . n A 1 171 ILE 171 297 297 ILE ILE A . n A 1 172 ILE 172 298 298 ILE ILE A . n A 1 173 TRP 173 299 299 TRP TRP A . n A 1 174 LEU 174 300 300 LEU LEU A . n A 1 175 GLN 175 301 301 GLN GLN A . n A 1 176 ARG 176 302 302 ARG ARG A . n A 1 177 ASP 177 303 303 ASP ASP A . n A 1 178 LEU 178 304 304 LEU LEU A . n A 1 179 GLY 179 305 305 GLY GLY A . n A 1 180 LEU 180 306 306 LEU LEU A . n A 1 181 TYR 181 307 307 TYR TYR A . n A 1 182 VAL 182 308 308 VAL VAL A . n A 1 183 VAL 183 309 309 VAL VAL A . n A 1 184 GLY 184 310 310 GLY GLY A . n A 1 185 LEU 185 311 311 LEU LEU A . n A 1 186 PHE 186 312 312 PHE PHE A . n A 1 187 ASP 187 313 313 ASP ASP A . n A 1 188 THR 188 314 314 THR THR A . n A 1 189 TYR 189 315 315 TYR TYR A . n A 1 190 HIS 190 316 316 HIS HIS A . n A 1 191 ALA 191 317 317 ALA ALA A . n A 1 192 SER 192 318 318 SER SER A . n A 1 193 LYS 193 319 319 LYS LYS A . n A 1 194 ALA 194 320 320 ALA ALA A . n A 1 195 ILE 195 321 321 ILE ILE A . n A 1 196 GLY 196 322 322 GLY GLY A . n A 1 197 LEU 197 323 323 LEU LEU A . n A 1 198 PRO 198 324 324 PRO PRO A . n A 1 199 ARG 199 325 325 ARG ARG A . n A 1 200 HIS 200 326 326 HIS HIS A . n A 1 201 SER 201 327 327 SER SER A . n A 1 202 LEU 202 328 328 LEU LEU A . n A 1 203 ALA 203 329 329 ALA ALA A . n A 1 204 TYR 204 330 330 TYR TYR A . n A 1 205 LEU 205 331 331 LEU LEU A . n A 1 206 LEU 206 332 332 LEU LEU A . n A 1 207 GLU 207 333 333 GLU GLU A . n A 1 208 ASN 208 334 334 ASN ASN A . n A 1 209 PHE 209 335 335 PHE PHE A . n A 1 210 ALA 210 336 336 ALA ALA A . n A 1 211 ASN 211 337 337 ASN ASN A . n A 1 212 PHE 212 338 338 PHE PHE A . n A 1 213 LYS 213 339 339 LYS LYS A . n A 1 214 THR 214 340 340 THR THR A . n A 1 215 SER 215 341 341 SER SER A . n A 1 216 LYS 216 342 342 LYS LYS A . n A 1 217 LYS 217 343 343 LYS LYS A . n A 1 218 TYR 218 344 344 TYR TYR A . n A 1 219 GLN 219 345 345 GLN GLN A . n A 1 220 LEU 220 346 346 LEU LEU A . n A 1 221 ALA 221 347 347 ALA ALA A . n A 1 222 ASP 222 348 348 ASP ASP A . n A 1 223 TRP 223 349 349 TRP TRP A . n A 1 224 ARG 224 350 350 ARG ARG A . n A 1 225 ILE 225 351 351 ILE ILE A . n A 1 226 ARG 226 352 352 ARG ARG A . n A 1 227 PRO 227 353 353 PRO PRO A . n A 1 228 LEU 228 354 354 LEU LEU A . n A 1 229 SER 229 355 355 SER SER A . n A 1 230 LYS 230 356 356 LYS LYS A . n A 1 231 PRO 231 357 357 PRO PRO A . n A 1 232 MET 232 358 358 MET MET A . n A 1 233 THR 233 359 359 THR THR A . n A 1 234 ALA 234 360 360 ALA ALA A . n A 1 235 ALA 235 361 361 ALA ALA A . n A 1 236 ALA 236 362 362 ALA ALA A . n A 1 237 ARG 237 363 363 ARG ARG A . n A 1 238 ALA 238 364 364 ALA ALA A . n A 1 239 ASP 239 365 365 ASP ASP A . n A 1 240 THR 240 366 366 THR THR A . n A 1 241 HIS 241 367 367 HIS HIS A . n A 1 242 PHE 242 368 368 PHE PHE A . n A 1 243 LEU 243 369 369 LEU LEU A . n A 1 244 LEU 244 370 370 LEU LEU A . n A 1 245 ASN 245 371 371 ASN ASN A . n A 1 246 ILE 246 372 372 ILE ILE A . n A 1 247 TYR 247 373 373 TYR TYR A . n A 1 248 ASP 248 374 374 ASP ASP A . n A 1 249 GLN 249 375 375 GLN GLN A . n A 1 250 LEU 250 376 376 LEU LEU A . n A 1 251 ARG 251 377 377 ARG ARG A . n A 1 252 ASN 252 378 378 ASN ASN A . n A 1 253 LYS 253 379 379 LYS LYS A . n A 1 254 LEU 254 380 380 LEU LEU A . n A 1 255 ILE 255 381 381 ILE ILE A . n A 1 256 GLU 256 382 382 GLU GLU A . n A 1 257 SER 257 383 383 SER SER A . n A 1 258 ASN 258 384 384 ASN ASN A . n A 1 259 LYS 259 385 385 LYS LYS A . n A 1 260 LEU 260 386 386 LEU LEU A . n A 1 261 ALA 261 387 387 ALA ALA A . n A 1 262 GLY 262 388 388 GLY GLY A . n A 1 263 VAL 263 389 389 VAL VAL A . n A 1 264 LEU 264 390 390 LEU LEU A . n A 1 265 TYR 265 391 391 TYR TYR A . n A 1 266 GLU 266 392 392 GLU GLU A . n A 1 267 SER 267 393 393 SER SER A . n A 1 268 ARG 268 394 394 ARG ARG A . n A 1 269 ASN 269 395 395 ASN ASN A . n A 1 270 VAL 270 396 396 VAL VAL A . n A 1 271 ALA 271 397 397 ALA ALA A . n A 1 272 LYS 272 398 398 LYS LYS A . n A 1 273 ARG 273 399 399 ARG ARG A . n A 1 274 ARG 274 400 400 ARG ARG A . n A 1 275 PHE 275 401 401 PHE PHE A . n A 1 276 GLU 276 402 402 GLU GLU A . n A 1 277 TYR 277 403 403 TYR TYR A . n A 1 278 SER 278 404 404 SER SER A . n A 1 279 LYS 279 405 405 LYS LYS A . n A 1 280 TYR 280 406 406 TYR TYR A . n A 1 281 ARG 281 407 407 ARG ARG A . n A 1 282 PRO 282 408 408 PRO PRO A . n A 1 283 LEU 283 409 409 LEU LEU A . n A 1 284 THR 284 410 410 THR THR A . n A 1 285 PRO 285 411 411 PRO PRO A . n A 1 286 SER 286 412 412 SER SER A . n A 1 287 SER 287 413 413 SER SER A . n A 1 288 GLU 288 414 414 GLU GLU A . n A 1 289 VAL 289 415 415 VAL VAL A . n A 1 290 TYR 290 416 416 TYR TYR A . n A 1 291 SER 291 417 417 SER SER A . n A 1 292 PRO 292 418 418 PRO PRO A . n A 1 293 ILE 293 419 419 ILE ILE A . n A 1 294 GLU 294 420 420 GLU GLU A . n A 1 295 LYS 295 421 421 LYS LYS A . n A 1 296 GLU 296 422 422 GLU GLU A . n A 1 297 SER 297 423 423 SER SER A . n A 1 298 PRO 298 424 424 PRO PRO A . n A 1 299 TRP 299 425 425 TRP TRP A . n A 1 300 LYS 300 426 426 LYS LYS A . n A 1 301 ILE 301 427 427 ILE ILE A . n A 1 302 LEU 302 428 428 LEU LEU A . n A 1 303 MET 303 429 429 MET MET A . n A 1 304 TYR 304 430 430 TYR TYR A . n A 1 305 GLN 305 431 431 GLN GLN A . n A 1 306 TYR 306 432 432 TYR TYR A . n A 1 307 ASN 307 433 433 ASN ASN A . n A 1 308 ILE 308 434 434 ILE ILE A . n A 1 309 PRO 309 435 435 PRO PRO A . n A 1 310 PRO 310 436 436 PRO PRO A . n A 1 311 GLU 311 437 437 GLU GLU A . n A 1 312 ARG 312 438 438 ARG ARG A . n A 1 313 GLU 313 439 439 GLU GLU A . n A 1 314 VAL 314 440 440 VAL VAL A . n A 1 315 LEU 315 441 441 LEU LEU A . n A 1 316 VAL 316 442 442 VAL VAL A . n A 1 317 ARG 317 443 443 ARG ARG A . n A 1 318 GLU 318 444 444 GLU GLU A . n A 1 319 LEU 319 445 445 LEU LEU A . n A 1 320 TYR 320 446 446 TYR TYR A . n A 1 321 GLN 321 447 447 GLN GLN A . n A 1 322 TRP 322 448 448 TRP TRP A . n A 1 323 ARG 323 449 449 ARG ARG A . n A 1 324 ASP 324 450 450 ASP ASP A . n A 1 325 LEU 325 451 451 LEU LEU A . n A 1 326 ILE 326 452 452 ILE ILE A . n A 1 327 ALA 327 453 453 ALA ALA A . n A 1 328 ARG 328 454 454 ARG ARG A . n A 1 329 ARG 329 455 455 ARG ARG A . n A 1 330 ASP 330 456 456 ASP ASP A . n A 1 331 ASP 331 457 457 ASP ASP A . n A 1 332 GLU 332 458 458 GLU GLU A . n A 1 333 SER 333 459 459 SER SER A . n A 1 334 PRO 334 460 460 PRO PRO A . n A 1 335 ARG 335 461 461 ARG ARG A . n A 1 336 PHE 336 462 462 PHE PHE A . n A 1 337 VAL 337 463 463 VAL VAL A . n A 1 338 MET 338 464 464 MET MET A . n A 1 339 PRO 339 465 465 PRO PRO A . n A 1 340 ASN 340 466 466 ASN ASN A . n A 1 341 GLN 341 467 467 GLN GLN A . n A 1 342 LEU 342 468 468 LEU LEU A . n A 1 343 LEU 343 469 469 LEU LEU A . n A 1 344 ALA 344 470 470 ALA ALA A . n A 1 345 ALA 345 471 471 ALA ALA A . n A 1 346 LEU 346 472 472 LEU LEU A . n A 1 347 VAL 347 473 473 VAL VAL A . n A 1 348 ALA 348 474 474 ALA ALA A . n A 1 349 TYR 349 475 475 TYR TYR A . n A 1 350 THR 350 476 476 THR THR A . n A 1 351 PRO 351 477 477 PRO PRO A . n A 1 352 THR 352 478 478 THR THR A . n A 1 353 ASP 353 479 479 ASP ASP A . n A 1 354 VAL 354 480 480 VAL VAL A . n A 1 355 ILE 355 481 481 ILE ILE A . n A 1 356 GLY 356 482 482 GLY GLY A . n A 1 357 VAL 357 483 483 VAL VAL A . n A 1 358 VAL 358 484 484 VAL VAL A . n A 1 359 SER 359 485 485 SER SER A . n A 1 360 LEU 360 486 486 LEU LEU A . n A 1 361 THR 361 487 487 THR THR A . n A 1 362 ASN 362 488 488 ASN ASN A . n A 1 363 GLY 363 489 489 GLY GLY A . n A 1 364 VAL 364 490 490 VAL VAL A . n A 1 365 THR 365 491 491 THR THR A . n A 1 366 GLU 366 492 492 GLU GLU A . n A 1 367 HIS 367 493 493 HIS HIS A . n A 1 368 VAL 368 494 494 VAL VAL A . n A 1 369 ARG 369 495 495 ARG ARG A . n A 1 370 GLN 370 496 496 GLN GLN A . n A 1 371 ASN 371 497 497 ASN ASN A . n A 1 372 ALA 372 498 498 ALA ALA A . n A 1 373 LYS 373 499 499 LYS LYS A . n A 1 374 LEU 374 500 500 LEU LEU A . n A 1 375 LEU 375 501 501 LEU LEU A . n A 1 376 ALA 376 502 502 ALA ALA A . n A 1 377 ASN 377 503 503 ASN ASN A . n A 1 378 LEU 378 504 504 LEU LEU A . n A 1 379 ILE 379 505 505 ILE ILE A . n A 1 380 ARG 380 506 506 ARG ARG A . n A 1 381 ASP 381 507 507 ASP ASP A . n A 1 382 ALA 382 508 508 ALA ALA A . n A 1 383 LEU 383 509 509 LEU LEU A . n A 1 384 ARG 384 510 510 ARG ARG A . n A 1 385 ASN 385 511 511 ASN ASN A . n A 1 386 ILE 386 512 512 ILE ILE A . n A 1 387 LYS 387 513 513 LYS LYS A . n A 1 388 ASN 388 514 514 ASN ASN A . n A 1 389 THR 389 515 515 THR THR A . n A 1 390 ASN 390 516 516 ASN ASN A . n A 1 391 GLU 391 517 ? ? ? A . n A 1 392 GLU 392 518 ? ? ? A . n A 1 393 ALA 393 519 ? ? ? A . n A 1 394 THR 394 520 ? ? ? A . n A 1 395 PRO 395 521 ? ? ? A . n A 1 396 ILE 396 522 ? ? ? A . n A 1 397 PRO 397 523 ? ? ? A . n A 1 398 SER 398 524 ? ? ? A . n A 1 399 SER 399 525 ? ? ? A . n A 1 400 GLU 400 526 ? ? ? A . n A 1 401 THR 401 527 ? ? ? A . n A 1 402 LYS 402 528 ? ? ? A . n A 1 403 ALA 403 529 ? ? ? A . n A 1 404 ASP 404 530 ? ? ? A . n A 1 405 GLY 405 531 ? ? ? A . n A 1 406 ILE 406 532 ? ? ? A . n A 1 407 LEU 407 533 ? ? ? A . n A 1 408 LEU 408 534 ? ? ? A . n A 1 409 GLU 409 535 ? ? ? A . n A 1 410 THR 410 536 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 537 1 HOH HOH A . B 2 HOH 2 538 2 HOH HOH A . B 2 HOH 3 539 3 HOH HOH A . B 2 HOH 4 540 4 HOH HOH A . B 2 HOH 5 541 5 HOH HOH A . B 2 HOH 6 542 6 HOH HOH A . B 2 HOH 7 543 7 HOH HOH A . B 2 HOH 8 544 8 HOH HOH A . B 2 HOH 9 545 9 HOH HOH A . B 2 HOH 10 546 10 HOH HOH A . B 2 HOH 11 547 11 HOH HOH A . B 2 HOH 12 548 12 HOH HOH A . B 2 HOH 13 549 13 HOH HOH A . B 2 HOH 14 550 14 HOH HOH A . B 2 HOH 15 551 15 HOH HOH A . B 2 HOH 16 552 16 HOH HOH A . B 2 HOH 17 553 17 HOH HOH A . B 2 HOH 18 554 18 HOH HOH A . B 2 HOH 19 555 19 HOH HOH A . B 2 HOH 20 556 21 HOH HOH A . B 2 HOH 21 557 22 HOH HOH A . B 2 HOH 22 558 23 HOH HOH A . B 2 HOH 23 559 24 HOH HOH A . B 2 HOH 24 560 25 HOH HOH A . B 2 HOH 25 561 27 HOH HOH A . B 2 HOH 26 562 28 HOH HOH A . B 2 HOH 27 563 29 HOH HOH A . B 2 HOH 28 564 30 HOH HOH A . B 2 HOH 29 565 31 HOH HOH A . B 2 HOH 30 566 32 HOH HOH A . B 2 HOH 31 567 33 HOH HOH A . B 2 HOH 32 568 34 HOH HOH A . B 2 HOH 33 569 35 HOH HOH A . B 2 HOH 34 570 36 HOH HOH A . B 2 HOH 35 571 37 HOH HOH A . B 2 HOH 36 572 38 HOH HOH A . B 2 HOH 37 573 39 HOH HOH A . B 2 HOH 38 574 40 HOH HOH A . B 2 HOH 39 575 41 HOH HOH A . B 2 HOH 40 576 42 HOH HOH A . B 2 HOH 41 577 43 HOH HOH A . B 2 HOH 42 578 44 HOH HOH A . B 2 HOH 43 579 45 HOH HOH A . B 2 HOH 44 580 46 HOH HOH A . B 2 HOH 45 581 47 HOH HOH A . B 2 HOH 46 582 48 HOH HOH A . B 2 HOH 47 583 49 HOH HOH A . B 2 HOH 48 584 50 HOH HOH A . B 2 HOH 49 585 51 HOH HOH A . B 2 HOH 50 586 52 HOH HOH A . B 2 HOH 51 587 53 HOH HOH A . B 2 HOH 52 588 54 HOH HOH A . B 2 HOH 53 589 55 HOH HOH A . B 2 HOH 54 590 56 HOH HOH A . B 2 HOH 55 591 57 HOH HOH A . B 2 HOH 56 592 58 HOH HOH A . B 2 HOH 57 593 59 HOH HOH A . B 2 HOH 58 594 60 HOH HOH A . B 2 HOH 59 595 61 HOH HOH A . B 2 HOH 60 596 62 HOH HOH A . B 2 HOH 61 597 63 HOH HOH A . B 2 HOH 62 598 64 HOH HOH A . B 2 HOH 63 599 65 HOH HOH A . B 2 HOH 64 600 66 HOH HOH A . B 2 HOH 65 601 67 HOH HOH A . B 2 HOH 66 602 68 HOH HOH A . B 2 HOH 67 603 69 HOH HOH A . B 2 HOH 68 604 70 HOH HOH A . B 2 HOH 69 605 71 HOH HOH A . B 2 HOH 70 606 72 HOH HOH A . B 2 HOH 71 607 73 HOH HOH A . B 2 HOH 72 608 74 HOH HOH A . B 2 HOH 73 609 76 HOH HOH A . B 2 HOH 74 610 77 HOH HOH A . B 2 HOH 75 611 78 HOH HOH A . B 2 HOH 76 612 79 HOH HOH A . B 2 HOH 77 613 80 HOH HOH A . B 2 HOH 78 614 81 HOH HOH A . B 2 HOH 79 615 82 HOH HOH A . B 2 HOH 80 616 83 HOH HOH A . B 2 HOH 81 617 84 HOH HOH A . B 2 HOH 82 618 85 HOH HOH A . B 2 HOH 83 619 86 HOH HOH A . B 2 HOH 84 620 88 HOH HOH A . B 2 HOH 85 621 89 HOH HOH A . B 2 HOH 86 622 90 HOH HOH A . B 2 HOH 87 623 91 HOH HOH A . B 2 HOH 88 624 92 HOH HOH A . B 2 HOH 89 625 93 HOH HOH A . B 2 HOH 90 626 94 HOH HOH A . B 2 HOH 91 627 95 HOH HOH A . B 2 HOH 92 628 96 HOH HOH A . B 2 HOH 93 629 97 HOH HOH A . B 2 HOH 94 630 98 HOH HOH A . B 2 HOH 95 631 99 HOH HOH A . B 2 HOH 96 632 100 HOH HOH A . B 2 HOH 97 633 101 HOH HOH A . B 2 HOH 98 634 104 HOH HOH A . B 2 HOH 99 635 105 HOH HOH A . B 2 HOH 100 636 106 HOH HOH A . B 2 HOH 101 637 107 HOH HOH A . B 2 HOH 102 638 108 HOH HOH A . B 2 HOH 103 639 109 HOH HOH A . B 2 HOH 104 640 110 HOH HOH A . B 2 HOH 105 641 112 HOH HOH A . B 2 HOH 106 642 113 HOH HOH A . B 2 HOH 107 643 114 HOH HOH A . B 2 HOH 108 644 115 HOH HOH A . B 2 HOH 109 645 116 HOH HOH A . B 2 HOH 110 646 117 HOH HOH A . B 2 HOH 111 647 118 HOH HOH A . B 2 HOH 112 648 119 HOH HOH A . B 2 HOH 113 649 121 HOH HOH A . B 2 HOH 114 650 122 HOH HOH A . B 2 HOH 115 651 124 HOH HOH A . B 2 HOH 116 652 125 HOH HOH A . B 2 HOH 117 653 126 HOH HOH A . B 2 HOH 118 654 127 HOH HOH A . B 2 HOH 119 655 128 HOH HOH A . B 2 HOH 120 656 129 HOH HOH A . B 2 HOH 121 657 130 HOH HOH A . B 2 HOH 122 658 131 HOH HOH A . B 2 HOH 123 659 132 HOH HOH A . B 2 HOH 124 660 133 HOH HOH A . B 2 HOH 125 661 134 HOH HOH A . B 2 HOH 126 662 136 HOH HOH A . B 2 HOH 127 663 137 HOH HOH A . B 2 HOH 128 664 138 HOH HOH A . B 2 HOH 129 665 139 HOH HOH A . B 2 HOH 130 666 140 HOH HOH A . B 2 HOH 131 667 142 HOH HOH A . B 2 HOH 132 668 144 HOH HOH A . B 2 HOH 133 669 146 HOH HOH A . B 2 HOH 134 670 147 HOH HOH A . B 2 HOH 135 671 148 HOH HOH A . B 2 HOH 136 672 149 HOH HOH A . B 2 HOH 137 673 150 HOH HOH A . B 2 HOH 138 674 151 HOH HOH A . B 2 HOH 139 675 152 HOH HOH A . B 2 HOH 140 676 153 HOH HOH A . B 2 HOH 141 677 155 HOH HOH A . B 2 HOH 142 678 156 HOH HOH A . B 2 HOH 143 679 157 HOH HOH A . B 2 HOH 144 680 158 HOH HOH A . B 2 HOH 145 681 159 HOH HOH A . B 2 HOH 146 682 161 HOH HOH A . B 2 HOH 147 683 163 HOH HOH A . B 2 HOH 148 684 164 HOH HOH A . B 2 HOH 149 685 165 HOH HOH A . B 2 HOH 150 686 166 HOH HOH A . B 2 HOH 151 687 167 HOH HOH A . B 2 HOH 152 688 169 HOH HOH A . B 2 HOH 153 689 170 HOH HOH A . B 2 HOH 154 690 172 HOH HOH A . B 2 HOH 155 691 173 HOH HOH A . B 2 HOH 156 692 174 HOH HOH A . B 2 HOH 157 693 178 HOH HOH A . B 2 HOH 158 694 179 HOH HOH A . B 2 HOH 159 695 180 HOH HOH A . B 2 HOH 160 696 181 HOH HOH A . B 2 HOH 161 697 182 HOH HOH A . B 2 HOH 162 698 183 HOH HOH A . B 2 HOH 163 699 184 HOH HOH A . B 2 HOH 164 700 186 HOH HOH A . B 2 HOH 165 701 189 HOH HOH A . B 2 HOH 166 702 190 HOH HOH A . B 2 HOH 167 703 192 HOH HOH A . B 2 HOH 168 704 194 HOH HOH A . B 2 HOH 169 705 195 HOH HOH A . B 2 HOH 170 706 196 HOH HOH A . B 2 HOH 171 707 197 HOH HOH A . B 2 HOH 172 708 199 HOH HOH A . B 2 HOH 173 709 200 HOH HOH A . B 2 HOH 174 710 201 HOH HOH A . B 2 HOH 175 711 202 HOH HOH A . B 2 HOH 176 712 203 HOH HOH A . B 2 HOH 177 713 204 HOH HOH A . B 2 HOH 178 714 205 HOH HOH A . B 2 HOH 179 715 207 HOH HOH A . B 2 HOH 180 716 209 HOH HOH A . B 2 HOH 181 717 210 HOH HOH A . B 2 HOH 182 718 211 HOH HOH A . B 2 HOH 183 719 212 HOH HOH A . B 2 HOH 184 720 213 HOH HOH A . B 2 HOH 185 721 214 HOH HOH A . B 2 HOH 186 722 215 HOH HOH A . B 2 HOH 187 723 217 HOH HOH A . B 2 HOH 188 724 218 HOH HOH A . B 2 HOH 189 725 219 HOH HOH A . B 2 HOH 190 726 220 HOH HOH A . B 2 HOH 191 727 221 HOH HOH A . B 2 HOH 192 728 222 HOH HOH A . B 2 HOH 193 729 223 HOH HOH A . B 2 HOH 194 730 224 HOH HOH A . B 2 HOH 195 731 225 HOH HOH A . B 2 HOH 196 732 226 HOH HOH A . B 2 HOH 197 733 227 HOH HOH A . B 2 HOH 198 734 228 HOH HOH A . B 2 HOH 199 735 229 HOH HOH A . B 2 HOH 200 736 230 HOH HOH A . B 2 HOH 201 737 231 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-07-25 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' diffrn_source 4 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.contact_author' 3 4 'Structure model' '_software.contact_author_email' 4 4 'Structure model' '_software.date' 5 4 'Structure model' '_software.language' 6 4 'Structure model' '_software.location' 7 4 'Structure model' '_software.name' 8 4 'Structure model' '_software.type' 9 4 'Structure model' '_software.version' 10 5 'Structure model' '_database_2.pdbx_DOI' 11 5 'Structure model' '_database_2.pdbx_database_accession' 12 5 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 13 5 'Structure model' '_struct_ref_seq_dif.details' # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 SHARP . ? program 'de La Fortelle' sharp-develop@globalphasing.com phasing http://babinet.globalphasing.com/sharp/ ? ? 3 SOLOMON . ? program 'Abrahams J. P.' ccp4@dl.ac.uk phasing http://www.ccp4.ac.uk/main.html Fortran ? 4 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 5 PDB_EXTRACT 1.701 'Nov. 1, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 MAR345 . ? ? ? ? 'data collection' ? ? ? 7 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 128 ? ? -130.89 -30.01 2 1 VAL A 129 ? ? 53.13 82.93 3 1 HIS A 146 ? ? 170.85 148.51 4 1 PRO A 161 ? ? -39.13 145.93 5 1 SER A 163 ? ? -55.48 -72.43 6 1 GLU A 164 ? ? -46.23 -18.72 7 1 SER A 165 ? ? -78.68 -71.13 8 1 ARG A 167 ? ? -154.97 -80.03 9 1 LEU A 168 ? ? 145.93 148.34 10 1 ASP A 170 ? ? -39.36 152.05 11 1 ASP A 171 ? ? -30.98 155.50 12 1 SER A 177 ? ? -39.94 148.74 13 1 ASP A 217 ? ? -142.64 16.09 14 1 ASN A 231 ? ? -100.75 50.71 15 1 ARG A 245 ? ? -107.50 42.09 16 1 ASN A 337 ? ? 37.31 52.16 17 1 LYS A 342 ? ? -71.15 20.42 18 1 GLN A 345 ? ? -68.71 1.92 19 1 LYS A 421 ? ? -79.39 21.77 20 1 SER A 423 ? ? -9.20 132.31 21 1 TRP A 425 ? ? -18.56 128.85 22 1 LYS A 426 ? ? 59.27 -157.06 23 1 ILE A 427 ? ? -33.68 103.77 24 1 TYR A 430 ? ? -73.82 26.91 25 1 GLN A 431 ? ? -19.45 92.80 26 1 TYR A 432 ? ? -81.31 35.42 27 1 ASN A 433 ? ? 71.13 39.11 28 1 ILE A 434 ? ? -50.81 96.82 29 1 PRO A 436 ? ? -46.79 -72.13 30 1 ARG A 438 ? ? -78.87 25.50 31 1 MET A 464 ? ? -166.46 109.91 32 1 THR A 476 ? ? 37.60 57.66 33 1 THR A 487 ? ? -32.78 -29.24 34 1 LYS A 513 ? ? -49.88 -16.22 35 1 ASN A 514 ? ? -97.50 -60.67 36 1 THR A 515 ? ? -26.10 -66.33 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 517 ? A GLU 391 2 1 Y 1 A GLU 518 ? A GLU 392 3 1 Y 1 A ALA 519 ? A ALA 393 4 1 Y 1 A THR 520 ? A THR 394 5 1 Y 1 A PRO 521 ? A PRO 395 6 1 Y 1 A ILE 522 ? A ILE 396 7 1 Y 1 A PRO 523 ? A PRO 397 8 1 Y 1 A SER 524 ? A SER 398 9 1 Y 1 A SER 525 ? A SER 399 10 1 Y 1 A GLU 526 ? A GLU 400 11 1 Y 1 A THR 527 ? A THR 401 12 1 Y 1 A LYS 528 ? A LYS 402 13 1 Y 1 A ALA 529 ? A ALA 403 14 1 Y 1 A ASP 530 ? A ASP 404 15 1 Y 1 A GLY 531 ? A GLY 405 16 1 Y 1 A ILE 532 ? A ILE 406 17 1 Y 1 A LEU 533 ? A LEU 407 18 1 Y 1 A LEU 534 ? A LEU 408 19 1 Y 1 A GLU 535 ? A GLU 409 20 1 Y 1 A THR 536 ? A THR 410 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #