HEADER HYDROLASE, GENE REGULATION 14-JUN-06 2HBK TITLE STRUCTURE OF THE YEAST NUCLEAR EXOSOME COMPONENT, RRP6P, REVEALS AN TITLE 2 INTERPLAY BETWEEN THE ACTIVE SITE AND THE HRDC DOMAIN; PROTEIN IN TITLE 3 COMPLEX WITH MN COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXOSOME COMPLEX EXONUCLEASE RRP6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRP6P CENTRAL FRAGMENT, RESIDUES 129-536; COMPND 5 SYNONYM: RIBOSOMAL RNA- PROCESSING PROTEIN 6; COMPND 6 EC: 3.1.13.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: RRP6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30 EK/LIC KEYWDS EXOSOME, RNA METABOLISM, RNA SURVEILLANCE, RNA PROCESSING, HYDROLASE, KEYWDS 2 GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR S.F.MIDTGAARD,J.ASSENHOLT,A.T.JONSTRUP,L.B.VAN,T.H.JENSEN, AUTHOR 2 D.E.BRODERSEN REVDAT 6 25-OCT-23 2HBK 1 REMARK REVDAT 5 10-NOV-21 2HBK 1 REMARK SEQADV LINK REVDAT 4 18-OCT-17 2HBK 1 REMARK REVDAT 3 24-FEB-09 2HBK 1 VERSN REVDAT 2 22-AUG-06 2HBK 1 JRNL REVDAT 1 25-JUL-06 2HBK 0 JRNL AUTH S.F.MIDTGAARD,J.ASSENHOLT,A.T.JONSTRUP,L.B.VAN,T.H.JENSEN, JRNL AUTH 2 D.E.BRODERSEN JRNL TITL STRUCTURE OF THE NUCLEAR EXOSOME COMPONENT RRP6P REVEALS AN JRNL TITL 2 INTERPLAY BETWEEN THE ACTIVE SITE AND THE HRDC DOMAIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 103 11898 2006 JRNL REFN ISSN 0027-8424 JRNL PMID 16882719 JRNL DOI 10.1073/PNAS.0604731103 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 26390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2646 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.27 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 435 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 49 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3216 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 252 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.32800 REMARK 3 B22 (A**2) : 3.32800 REMARK 3 B33 (A**2) : -6.65600 REMARK 3 B12 (A**2) : -0.32900 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.28 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.34 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.271 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.06 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.859 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : NULL REMARK 3 BSOL : 44.10 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2HBK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038163. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.50 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : SI MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27056 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 36.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.34100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2HBJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12-14% PEG 20000, 0.1M MES OR HEPES, REMARK 280 PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.57633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.15267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.15267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.57633 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS THE MONOMER PRESENT IN THE REMARK 300 ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 517 REMARK 465 GLU A 518 REMARK 465 ALA A 519 REMARK 465 THR A 520 REMARK 465 PRO A 521 REMARK 465 ILE A 522 REMARK 465 PRO A 523 REMARK 465 SER A 524 REMARK 465 SER A 525 REMARK 465 GLU A 526 REMARK 465 THR A 527 REMARK 465 LYS A 528 REMARK 465 ALA A 529 REMARK 465 ASP A 530 REMARK 465 GLY A 531 REMARK 465 ILE A 532 REMARK 465 LEU A 533 REMARK 465 LEU A 534 REMARK 465 GLU A 535 REMARK 465 THR A 536 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 129 105.06 63.24 REMARK 500 PRO A 161 149.08 -39.22 REMARK 500 ARG A 167 -91.63 -144.46 REMARK 500 LEU A 168 169.09 161.03 REMARK 500 ASP A 170 145.43 -28.88 REMARK 500 ASP A 171 124.84 -33.67 REMARK 500 ASP A 172 -123.62 -99.84 REMARK 500 GLU A 173 -41.50 -137.14 REMARK 500 ASP A 217 23.36 -142.89 REMARK 500 ASN A 231 34.64 -97.77 REMARK 500 ARG A 245 49.75 -109.93 REMARK 500 LYS A 342 20.83 -67.83 REMARK 500 TYR A 344 -1.04 -141.56 REMARK 500 LEU A 409 -79.79 -57.83 REMARK 500 PRO A 418 124.46 -34.89 REMARK 500 SER A 423 140.39 -14.10 REMARK 500 TRP A 425 124.21 -31.70 REMARK 500 LYS A 426 -156.17 68.00 REMARK 500 ILE A 427 111.92 -39.35 REMARK 500 GLN A 431 88.02 -10.49 REMARK 500 TYR A 432 34.67 -76.05 REMARK 500 ASN A 433 37.73 72.13 REMARK 500 ILE A 434 100.08 -54.39 REMARK 500 PRO A 435 166.81 -44.20 REMARK 500 GLU A 437 22.15 -67.28 REMARK 500 MET A 464 108.62 -171.50 REMARK 500 THR A 476 59.00 38.47 REMARK 500 THR A 487 -31.67 -38.31 REMARK 500 ASN A 514 -115.69 -85.57 REMARK 500 THR A 515 -86.18 22.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1002 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 238 OD1 REMARK 620 2 ASP A 296 OD2 102.9 REMARK 620 3 HOH A1007 O 158.4 98.7 REMARK 620 4 HOH A1008 O 79.2 177.1 79.3 REMARK 620 5 HOH A1009 O 94.6 91.4 85.7 86.4 REMARK 620 6 HOH A1010 O 87.3 96.8 89.2 85.2 170.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1001 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 240 OE2 REMARK 620 2 ASP A 365 OD2 87.5 REMARK 620 3 HOH A1003 O 160.0 93.3 REMARK 620 4 HOH A1004 O 70.1 97.8 90.1 REMARK 620 5 HOH A1005 O 97.1 169.8 85.5 92.3 REMARK 620 6 HOH A1006 O 107.6 86.6 92.3 174.9 83.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HBJ RELATED DB: PDB REMARK 900 NATIVE RRP6P REMARK 900 RELATED ID: 2HBL RELATED DB: PDB REMARK 900 RRP6P IN COMPLEX WITH MN, ZN, AND AMP REMARK 900 RELATED ID: 2HBM RELATED DB: PDB REMARK 900 RRP6P IN COMPLEX WITH MN, ZN, AND UMP DBREF 2HBK A 129 536 UNP Q12149 RRP6_YEAST 129 536 SEQADV 2HBK GLY A 127 UNP Q12149 CLONING ARTIFACT SEQADV 2HBK MET A 128 UNP Q12149 CLONING ARTIFACT SEQADV 2HBK ALA A 361 UNP Q12149 TYR 361 ENGINEERED MUTATION SEQRES 1 A 410 GLY MET VAL GLU LYS PRO GLN LEU LYS PHE LYS SER PRO SEQRES 2 A 410 ILE ASP ASN SER GLU SER HIS PRO PHE ILE PRO LEU LEU SEQRES 3 A 410 LYS GLU LYS PRO ASN ALA LEU LYS PRO LEU SER GLU SER SEQRES 4 A 410 LEU ARG LEU VAL ASP ASP ASP GLU ASN ASN PRO SER HIS SEQRES 5 A 410 TYR PRO HIS PRO TYR GLU TYR GLU ILE ASP HIS GLN GLU SEQRES 6 A 410 TYR SER PRO GLU ILE LEU GLN ILE ARG GLU GLU ILE PRO SEQRES 7 A 410 SER LYS SER TRP ASP ASP SER VAL PRO ILE TRP VAL ASP SEQRES 8 A 410 THR SER THR GLU LEU GLU SER MET LEU GLU ASP LEU LYS SEQRES 9 A 410 ASN THR LYS GLU ILE ALA VAL ASP LEU GLU HIS HIS ASP SEQRES 10 A 410 TYR ARG SER TYR TYR GLY ILE VAL CYS LEU MET GLN ILE SEQRES 11 A 410 SER THR ARG GLU ARG ASP TYR LEU VAL ASP THR LEU LYS SEQRES 12 A 410 LEU ARG GLU ASN LEU HIS ILE LEU ASN GLU VAL PHE THR SEQRES 13 A 410 ASN PRO SER ILE VAL LYS VAL PHE HIS GLY ALA PHE MET SEQRES 14 A 410 ASP ILE ILE TRP LEU GLN ARG ASP LEU GLY LEU TYR VAL SEQRES 15 A 410 VAL GLY LEU PHE ASP THR TYR HIS ALA SER LYS ALA ILE SEQRES 16 A 410 GLY LEU PRO ARG HIS SER LEU ALA TYR LEU LEU GLU ASN SEQRES 17 A 410 PHE ALA ASN PHE LYS THR SER LYS LYS TYR GLN LEU ALA SEQRES 18 A 410 ASP TRP ARG ILE ARG PRO LEU SER LYS PRO MET THR ALA SEQRES 19 A 410 ALA ALA ARG ALA ASP THR HIS PHE LEU LEU ASN ILE TYR SEQRES 20 A 410 ASP GLN LEU ARG ASN LYS LEU ILE GLU SER ASN LYS LEU SEQRES 21 A 410 ALA GLY VAL LEU TYR GLU SER ARG ASN VAL ALA LYS ARG SEQRES 22 A 410 ARG PHE GLU TYR SER LYS TYR ARG PRO LEU THR PRO SER SEQRES 23 A 410 SER GLU VAL TYR SER PRO ILE GLU LYS GLU SER PRO TRP SEQRES 24 A 410 LYS ILE LEU MET TYR GLN TYR ASN ILE PRO PRO GLU ARG SEQRES 25 A 410 GLU VAL LEU VAL ARG GLU LEU TYR GLN TRP ARG ASP LEU SEQRES 26 A 410 ILE ALA ARG ARG ASP ASP GLU SER PRO ARG PHE VAL MET SEQRES 27 A 410 PRO ASN GLN LEU LEU ALA ALA LEU VAL ALA TYR THR PRO SEQRES 28 A 410 THR ASP VAL ILE GLY VAL VAL SER LEU THR ASN GLY VAL SEQRES 29 A 410 THR GLU HIS VAL ARG GLN ASN ALA LYS LEU LEU ALA ASN SEQRES 30 A 410 LEU ILE ARG ASP ALA LEU ARG ASN ILE LYS ASN THR ASN SEQRES 31 A 410 GLU GLU ALA THR PRO ILE PRO SER SER GLU THR LYS ALA SEQRES 32 A 410 ASP GLY ILE LEU LEU GLU THR HET MN A1001 1 HET MN A1002 1 HETNAM MN MANGANESE (II) ION FORMUL 2 MN 2(MN 2+) FORMUL 4 HOH *252(H2 O) HELIX 1 1 LYS A 131 PHE A 136 5 6 HELIX 2 2 PRO A 161 LEU A 166 1 6 HELIX 3 3 TYR A 183 GLN A 190 1 8 HELIX 4 4 SER A 193 LEU A 197 5 5 HELIX 5 5 SER A 207 SER A 211 5 5 HELIX 6 6 THR A 218 LYS A 230 1 13 HELIX 7 7 ASN A 273 ILE A 276 5 4 HELIX 8 8 LEU A 277 THR A 282 1 6 HELIX 9 9 ALA A 293 GLY A 305 1 13 HELIX 10 10 THR A 314 GLY A 322 1 9 HELIX 11 11 SER A 327 ASN A 337 1 11 HELIX 12 12 SER A 355 PHE A 368 1 14 HELIX 13 13 PHE A 368 SER A 383 1 16 HELIX 14 14 LYS A 385 ARG A 399 1 15 HELIX 15 15 TYR A 403 ARG A 407 5 5 HELIX 16 16 PRO A 435 GLU A 437 5 3 HELIX 17 17 ARG A 438 ASP A 457 1 20 HELIX 18 18 SER A 459 MET A 464 1 6 HELIX 19 19 PRO A 465 THR A 476 1 12 HELIX 20 20 ASP A 479 SER A 485 1 7 HELIX 21 21 THR A 491 ASN A 497 1 7 HELIX 22 22 ASN A 497 ASN A 514 1 18 SHEET 1 A 6 ILE A 214 VAL A 216 0 SHEET 2 A 6 ASP A 262 ASP A 266 1 O ASP A 262 N ILE A 214 SHEET 3 A 6 ILE A 250 SER A 257 -1 N ILE A 256 O TYR A 263 SHEET 4 A 6 GLU A 234 HIS A 242 -1 N ASP A 238 O GLN A 255 SHEET 5 A 6 VAL A 287 PHE A 290 1 O VAL A 289 N ILE A 235 SHEET 6 A 6 LEU A 311 ASP A 313 1 O PHE A 312 N LYS A 288 SHEET 1 B 2 ARG A 400 PHE A 401 0 SHEET 2 B 2 VAL A 415 TYR A 416 1 O TYR A 416 N ARG A 400 LINK OD1 ASP A 238 MN MN A1002 1555 1555 2.20 LINK OE2 GLU A 240 MN MN A1001 1555 1555 2.10 LINK OD2 ASP A 296 MN MN A1002 1555 1555 2.19 LINK OD2 ASP A 365 MN MN A1001 1555 1555 2.13 LINK MN MN A1001 O HOH A1003 1555 1555 2.04 LINK MN MN A1001 O HOH A1004 1555 1555 2.44 LINK MN MN A1001 O HOH A1005 1555 1555 2.52 LINK MN MN A1001 O HOH A1006 1555 1555 2.52 LINK MN MN A1002 O HOH A1007 1555 1555 2.03 LINK MN MN A1002 O HOH A1008 1555 1555 1.90 LINK MN MN A1002 O HOH A1009 1555 1555 2.29 LINK MN MN A1002 O HOH A1010 1555 1555 2.33 CISPEP 1 ARG A 352 PRO A 353 0 -0.14 SITE 1 AC1 6 GLU A 240 ASP A 365 HOH A1003 HOH A1004 SITE 2 AC1 6 HOH A1005 HOH A1006 SITE 1 AC2 6 ASP A 238 ASP A 296 HOH A1007 HOH A1008 SITE 2 AC2 6 HOH A1009 HOH A1010 CRYST1 110.680 110.680 79.729 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009035 0.005216 0.000000 0.00000 SCALE2 0.000000 0.010433 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012542 0.00000