data_2HBM # _entry.id 2HBM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2HBM pdb_00002hbm 10.2210/pdb2hbm/pdb RCSB RCSB038165 ? ? WWPDB D_1000038165 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2HBJ 'Native Rrp6p' unspecified PDB 2HBK 'Rrp6p in complex with Mn' unspecified PDB 2HBL 'Rrp6p in complex with Mn, Zn, and AMP' unspecified # _pdbx_database_status.entry_id 2HBM _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2006-06-14 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Midtgaard, S.F.' 1 'Assenholt, J.' 2 'Jonstrup, A.T.' 3 'Van, L.B.' 4 'Jensen, T.H.' 5 'Brodersen, D.E.' 6 # _citation.id primary _citation.title 'Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain.' _citation.journal_abbrev Proc.Natl.Acad.Sci.Usa _citation.journal_volume 103 _citation.page_first 11898 _citation.page_last 11903 _citation.year 2006 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16882719 _citation.pdbx_database_id_DOI 10.1073/pnas.0604731103 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Midtgaard, S.F.' 1 ? primary 'Assenholt, J.' 2 ? primary 'Jonstrup, A.T.' 3 ? primary 'Van, L.B.' 4 ? primary 'Jensen, T.H.' 5 ? primary 'Brodersen, D.E.' 6 ? # _cell.entry_id 2HBM _cell.length_a 110.577 _cell.length_b 110.577 _cell.length_c 79.330 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HBM _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Exosome complex exonuclease RRP6' 47675.125 1 3.1.13.- Y361A 'Rrp6p central fragment, residues 129-536' ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 3 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? 4 non-polymer syn "URIDINE-5'-MONOPHOSPHATE" 324.181 1 ? ? ? ? 5 water nat water 18.015 135 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Ribosomal RNA- processing protein 6' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GMVEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEIDHQEYSPEILQIREEIPSK SWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSI VKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADT HFLLNIYDQLRNKLIESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESPWKILMYQYNIPPEREVLVRELY QWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLIRDALRNIKNTNEEATPIPSSE TKADGILLET ; _entity_poly.pdbx_seq_one_letter_code_can ;GMVEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEIDHQEYSPEILQIREEIPSK SWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSI VKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADT HFLLNIYDQLRNKLIESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESPWKILMYQYNIPPEREVLVRELY QWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLIRDALRNIKNTNEEATPIPSSE TKADGILLET ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MET n 1 3 VAL n 1 4 GLU n 1 5 LYS n 1 6 PRO n 1 7 GLN n 1 8 LEU n 1 9 LYS n 1 10 PHE n 1 11 LYS n 1 12 SER n 1 13 PRO n 1 14 ILE n 1 15 ASP n 1 16 ASN n 1 17 SER n 1 18 GLU n 1 19 SER n 1 20 HIS n 1 21 PRO n 1 22 PHE n 1 23 ILE n 1 24 PRO n 1 25 LEU n 1 26 LEU n 1 27 LYS n 1 28 GLU n 1 29 LYS n 1 30 PRO n 1 31 ASN n 1 32 ALA n 1 33 LEU n 1 34 LYS n 1 35 PRO n 1 36 LEU n 1 37 SER n 1 38 GLU n 1 39 SER n 1 40 LEU n 1 41 ARG n 1 42 LEU n 1 43 VAL n 1 44 ASP n 1 45 ASP n 1 46 ASP n 1 47 GLU n 1 48 ASN n 1 49 ASN n 1 50 PRO n 1 51 SER n 1 52 HIS n 1 53 TYR n 1 54 PRO n 1 55 HIS n 1 56 PRO n 1 57 TYR n 1 58 GLU n 1 59 TYR n 1 60 GLU n 1 61 ILE n 1 62 ASP n 1 63 HIS n 1 64 GLN n 1 65 GLU n 1 66 TYR n 1 67 SER n 1 68 PRO n 1 69 GLU n 1 70 ILE n 1 71 LEU n 1 72 GLN n 1 73 ILE n 1 74 ARG n 1 75 GLU n 1 76 GLU n 1 77 ILE n 1 78 PRO n 1 79 SER n 1 80 LYS n 1 81 SER n 1 82 TRP n 1 83 ASP n 1 84 ASP n 1 85 SER n 1 86 VAL n 1 87 PRO n 1 88 ILE n 1 89 TRP n 1 90 VAL n 1 91 ASP n 1 92 THR n 1 93 SER n 1 94 THR n 1 95 GLU n 1 96 LEU n 1 97 GLU n 1 98 SER n 1 99 MET n 1 100 LEU n 1 101 GLU n 1 102 ASP n 1 103 LEU n 1 104 LYS n 1 105 ASN n 1 106 THR n 1 107 LYS n 1 108 GLU n 1 109 ILE n 1 110 ALA n 1 111 VAL n 1 112 ASP n 1 113 LEU n 1 114 GLU n 1 115 HIS n 1 116 HIS n 1 117 ASP n 1 118 TYR n 1 119 ARG n 1 120 SER n 1 121 TYR n 1 122 TYR n 1 123 GLY n 1 124 ILE n 1 125 VAL n 1 126 CYS n 1 127 LEU n 1 128 MET n 1 129 GLN n 1 130 ILE n 1 131 SER n 1 132 THR n 1 133 ARG n 1 134 GLU n 1 135 ARG n 1 136 ASP n 1 137 TYR n 1 138 LEU n 1 139 VAL n 1 140 ASP n 1 141 THR n 1 142 LEU n 1 143 LYS n 1 144 LEU n 1 145 ARG n 1 146 GLU n 1 147 ASN n 1 148 LEU n 1 149 HIS n 1 150 ILE n 1 151 LEU n 1 152 ASN n 1 153 GLU n 1 154 VAL n 1 155 PHE n 1 156 THR n 1 157 ASN n 1 158 PRO n 1 159 SER n 1 160 ILE n 1 161 VAL n 1 162 LYS n 1 163 VAL n 1 164 PHE n 1 165 HIS n 1 166 GLY n 1 167 ALA n 1 168 PHE n 1 169 MET n 1 170 ASP n 1 171 ILE n 1 172 ILE n 1 173 TRP n 1 174 LEU n 1 175 GLN n 1 176 ARG n 1 177 ASP n 1 178 LEU n 1 179 GLY n 1 180 LEU n 1 181 TYR n 1 182 VAL n 1 183 VAL n 1 184 GLY n 1 185 LEU n 1 186 PHE n 1 187 ASP n 1 188 THR n 1 189 TYR n 1 190 HIS n 1 191 ALA n 1 192 SER n 1 193 LYS n 1 194 ALA n 1 195 ILE n 1 196 GLY n 1 197 LEU n 1 198 PRO n 1 199 ARG n 1 200 HIS n 1 201 SER n 1 202 LEU n 1 203 ALA n 1 204 TYR n 1 205 LEU n 1 206 LEU n 1 207 GLU n 1 208 ASN n 1 209 PHE n 1 210 ALA n 1 211 ASN n 1 212 PHE n 1 213 LYS n 1 214 THR n 1 215 SER n 1 216 LYS n 1 217 LYS n 1 218 TYR n 1 219 GLN n 1 220 LEU n 1 221 ALA n 1 222 ASP n 1 223 TRP n 1 224 ARG n 1 225 ILE n 1 226 ARG n 1 227 PRO n 1 228 LEU n 1 229 SER n 1 230 LYS n 1 231 PRO n 1 232 MET n 1 233 THR n 1 234 ALA n 1 235 ALA n 1 236 ALA n 1 237 ARG n 1 238 ALA n 1 239 ASP n 1 240 THR n 1 241 HIS n 1 242 PHE n 1 243 LEU n 1 244 LEU n 1 245 ASN n 1 246 ILE n 1 247 TYR n 1 248 ASP n 1 249 GLN n 1 250 LEU n 1 251 ARG n 1 252 ASN n 1 253 LYS n 1 254 LEU n 1 255 ILE n 1 256 GLU n 1 257 SER n 1 258 ASN n 1 259 LYS n 1 260 LEU n 1 261 ALA n 1 262 GLY n 1 263 VAL n 1 264 LEU n 1 265 TYR n 1 266 GLU n 1 267 SER n 1 268 ARG n 1 269 ASN n 1 270 VAL n 1 271 ALA n 1 272 LYS n 1 273 ARG n 1 274 ARG n 1 275 PHE n 1 276 GLU n 1 277 TYR n 1 278 SER n 1 279 LYS n 1 280 TYR n 1 281 ARG n 1 282 PRO n 1 283 LEU n 1 284 THR n 1 285 PRO n 1 286 SER n 1 287 SER n 1 288 GLU n 1 289 VAL n 1 290 TYR n 1 291 SER n 1 292 PRO n 1 293 ILE n 1 294 GLU n 1 295 LYS n 1 296 GLU n 1 297 SER n 1 298 PRO n 1 299 TRP n 1 300 LYS n 1 301 ILE n 1 302 LEU n 1 303 MET n 1 304 TYR n 1 305 GLN n 1 306 TYR n 1 307 ASN n 1 308 ILE n 1 309 PRO n 1 310 PRO n 1 311 GLU n 1 312 ARG n 1 313 GLU n 1 314 VAL n 1 315 LEU n 1 316 VAL n 1 317 ARG n 1 318 GLU n 1 319 LEU n 1 320 TYR n 1 321 GLN n 1 322 TRP n 1 323 ARG n 1 324 ASP n 1 325 LEU n 1 326 ILE n 1 327 ALA n 1 328 ARG n 1 329 ARG n 1 330 ASP n 1 331 ASP n 1 332 GLU n 1 333 SER n 1 334 PRO n 1 335 ARG n 1 336 PHE n 1 337 VAL n 1 338 MET n 1 339 PRO n 1 340 ASN n 1 341 GLN n 1 342 LEU n 1 343 LEU n 1 344 ALA n 1 345 ALA n 1 346 LEU n 1 347 VAL n 1 348 ALA n 1 349 TYR n 1 350 THR n 1 351 PRO n 1 352 THR n 1 353 ASP n 1 354 VAL n 1 355 ILE n 1 356 GLY n 1 357 VAL n 1 358 VAL n 1 359 SER n 1 360 LEU n 1 361 THR n 1 362 ASN n 1 363 GLY n 1 364 VAL n 1 365 THR n 1 366 GLU n 1 367 HIS n 1 368 VAL n 1 369 ARG n 1 370 GLN n 1 371 ASN n 1 372 ALA n 1 373 LYS n 1 374 LEU n 1 375 LEU n 1 376 ALA n 1 377 ASN n 1 378 LEU n 1 379 ILE n 1 380 ARG n 1 381 ASP n 1 382 ALA n 1 383 LEU n 1 384 ARG n 1 385 ASN n 1 386 ILE n 1 387 LYS n 1 388 ASN n 1 389 THR n 1 390 ASN n 1 391 GLU n 1 392 GLU n 1 393 ALA n 1 394 THR n 1 395 PRO n 1 396 ILE n 1 397 PRO n 1 398 SER n 1 399 SER n 1 400 GLU n 1 401 THR n 1 402 LYS n 1 403 ALA n 1 404 ASP n 1 405 GLY n 1 406 ILE n 1 407 LEU n 1 408 LEU n 1 409 GLU n 1 410 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ;baker's yeast ; _entity_src_gen.gene_src_genus Saccharomyces _entity_src_gen.pdbx_gene_src_gene RRP6 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 Rosetta' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET30 Ek/LIC' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RRP6_YEAST _struct_ref.pdbx_db_accession Q12149 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEIDHQEYSPEILQIREEIPSKSW DDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVK VFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHF LLNIYDQLRNKLIESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESPWKILMYQYNIPPEREVLVRELYQW RDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLIRDALRNIKNTNEEATPIPSSETK ADGILLET ; _struct_ref.pdbx_align_begin 129 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2HBM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 410 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q12149 _struct_ref_seq.db_align_beg 129 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 536 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 129 _struct_ref_seq.pdbx_auth_seq_align_end 536 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2HBM GLY A 1 ? UNP Q12149 ? ? 'cloning artifact' 127 1 1 2HBM MET A 2 ? UNP Q12149 ? ? 'cloning artifact' 128 2 1 2HBM ALA A 235 ? UNP Q12149 TYR 361 'engineered mutation' 361 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 2HBM _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.93 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 58.09 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '12-14% PEG 20000, 0.1M Mes or Hepes, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2006-01-09 _diffrn_detector.details 'Osmic mirrors' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Osmic mirrors' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54179 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ENRAF-NONIUS FR591' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54179 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 2HBM _reflns.d_resolution_high 2.700 _reflns.d_resolution_low 29.61 _reflns.number_obs 15522 _reflns.pdbx_Rmerge_I_obs 0.061 _reflns.pdbx_netI_over_sigmaI 14.900 _reflns.pdbx_chi_squared 0.952 _reflns.pdbx_redundancy 4.100 _reflns.percent_possible_obs 98.400 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.number_all 15522 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 71.430 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.70 _reflns_shell.d_res_low 2.80 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs 1416 _reflns_shell.Rmerge_I_obs 0.666 _reflns_shell.meanI_over_sigI_obs 1.5 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.944 _reflns_shell.pdbx_redundancy 3.00 _reflns_shell.percent_possible_obs 92.90 _reflns_shell.number_unique_all 1416 _reflns_shell.percent_possible_all 92.9 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.ls_d_res_high 2.700 _refine.ls_d_res_low 29.61 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 93.000 _refine.ls_number_reflns_obs 14609 _refine.ls_R_factor_R_work 0.22 _refine.ls_R_factor_R_free 0.286 _refine.ls_percent_reflns_R_free 9.300 _refine.ls_number_reflns_R_free 1465 _refine.B_iso_mean 59.70 _refine.solvent_model_param_bsol 34.90 _refine.aniso_B[1][1] 3.834 _refine.aniso_B[2][2] 3.834 _refine.aniso_B[3][3] -7.667 _refine.aniso_B[1][2] -3.250 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.overall_FOM_work_R_set 0.796 _refine.entry_id 2HBM _refine.pdbx_ls_sigma_I 0.0 _refine.ls_number_reflns_all 14609 _refine.ls_R_factor_all 0.226 _refine.ls_R_factor_obs 0.226 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_starting_model 'PDB ENTRY 2HBJ' _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ISOTROPIC _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2HBM _refine_analyze.Luzzati_coordinate_error_obs 0.37 _refine_analyze.Luzzati_sigma_a_obs 0.46 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.45 _refine_analyze.Luzzati_sigma_a_free 0.52 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3216 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 23 _refine_hist.number_atoms_solvent 135 _refine_hist.number_atoms_total 3374 _refine_hist.d_res_high 2.700 _refine_hist.d_res_low 29.61 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_angle_deg 1.34 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d 0.007089 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.56 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.90530 ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.700 2.730 29 . 369 . 0.332 0.374 . 39 . . 408 . 'X-RAY DIFFRACTION' 2.730 2.770 29 . 363 . 0.333 0.392 . 36 . . 399 . 'X-RAY DIFFRACTION' 2.770 2.800 29 . 395 . 0.334 0.396 . 28 . . 423 . 'X-RAY DIFFRACTION' 2.800 2.840 29 . 382 . 0.318 0.307 . 47 . . 429 . 'X-RAY DIFFRACTION' 2.840 2.880 29 . 362 . 0.312 0.349 . 49 . . 411 . 'X-RAY DIFFRACTION' 2.880 2.920 29 . 425 . 0.306 0.471 . 45 . . 470 . 'X-RAY DIFFRACTION' 2.920 2.960 29 . 405 . 0.283 0.363 . 49 . . 454 . 'X-RAY DIFFRACTION' 2.960 3.010 29 . 427 . 0.269 0.325 . 51 . . 478 . 'X-RAY DIFFRACTION' 3.010 3.060 29 . 446 . 0.262 0.336 . 45 . . 491 . 'X-RAY DIFFRACTION' 3.060 3.110 29 . 450 . 0.267 0.299 . 49 . . 499 . 'X-RAY DIFFRACTION' 3.110 3.170 29 . 448 . 0.296 0.34 . 58 . . 506 . 'X-RAY DIFFRACTION' 3.170 3.230 29 . 439 . 0.267 0.361 . 52 . . 491 . 'X-RAY DIFFRACTION' 3.230 3.290 29 . 450 . 0.264 0.357 . 61 . . 511 . 'X-RAY DIFFRACTION' 3.290 3.360 29 . 463 . 0.268 0.305 . 44 . . 507 . 'X-RAY DIFFRACTION' 3.360 3.440 29 . 478 . 0.251 0.341 . 51 . . 529 . 'X-RAY DIFFRACTION' 3.440 3.530 29 . 451 . 0.267 0.289 . 59 . . 510 . 'X-RAY DIFFRACTION' 3.530 3.620 29 . 473 . 0.245 0.276 . 68 . . 541 . 'X-RAY DIFFRACTION' 3.620 3.730 29 . 483 . 0.222 0.346 . 45 . . 528 . 'X-RAY DIFFRACTION' 3.730 3.850 29 . 475 . 0.233 0.324 . 67 . . 542 . 'X-RAY DIFFRACTION' 3.850 3.990 29 . 491 . 0.2 0.255 . 48 . . 539 . 'X-RAY DIFFRACTION' 3.990 4.150 29 . 485 . 0.185 0.252 . 55 . . 540 . 'X-RAY DIFFRACTION' 4.150 4.340 29 . 476 . 0.198 0.307 . 51 . . 527 . 'X-RAY DIFFRACTION' 4.340 4.570 29 . 491 . 0.164 0.216 . 46 . . 537 . 'X-RAY DIFFRACTION' 4.570 4.850 29 . 495 . 0.151 0.188 . 53 . . 548 . 'X-RAY DIFFRACTION' 4.850 5.230 29 . 495 . 0.163 0.223 . 59 . . 554 . 'X-RAY DIFFRACTION' 5.230 5.750 29 . 496 . 0.191 0.264 . 42 . . 538 . 'X-RAY DIFFRACTION' 5.750 6.580 29 . 491 . 0.222 0.263 . 61 . . 552 . 'X-RAY DIFFRACTION' 6.580 8.300 29 . 513 . 0.194 0.269 . 52 . . 565 . 'X-RAY DIFFRACTION' 8.300 500.010 29 . 527 . 0.167 0.265 . 55 . . 582 . 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param ? 'X-RAY DIFFRACTION' 2 water_rep.param ? 'X-RAY DIFFRACTION' 3 ion.param ? 'X-RAY DIFFRACTION' 4 dna-rna_rep.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 2HBM _struct.title ;Structure of the yeast nuclear exosome component, Rrp6p, reveals an interplay between the active site and the HRDC domain; Protein in complex with Mn, Zn, and UMP ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2HBM _struct_keywords.pdbx_keywords 'HYDROLASE, GENE REGULATION' _struct_keywords.text 'exosome, RNA metabolism, RNA surveillance, RNA processing, HYDROLASE, GENE REGULATION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details 'The biological assembly is the monomer present in the asymmetric unit.' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 5 ? PHE A 10 ? LYS A 131 PHE A 136 5 ? 6 HELX_P HELX_P2 2 PRO A 35 ? LEU A 40 ? PRO A 161 LEU A 166 1 ? 6 HELX_P HELX_P3 3 TYR A 57 ? GLN A 64 ? TYR A 183 GLN A 190 1 ? 8 HELX_P HELX_P4 4 SER A 67 ? LEU A 71 ? SER A 193 LEU A 197 5 ? 5 HELX_P HELX_P5 5 SER A 81 ? SER A 85 ? SER A 207 SER A 211 5 ? 5 HELX_P HELX_P6 6 THR A 92 ? LYS A 104 ? THR A 218 LYS A 230 1 ? 13 HELX_P HELX_P7 7 ASN A 147 ? ILE A 150 ? ASN A 273 ILE A 276 5 ? 4 HELX_P HELX_P8 8 LEU A 151 ? THR A 156 ? LEU A 277 THR A 282 1 ? 6 HELX_P HELX_P9 9 MET A 169 ? GLY A 179 ? MET A 295 GLY A 305 1 ? 11 HELX_P HELX_P10 10 THR A 188 ? GLY A 196 ? THR A 314 GLY A 322 1 ? 9 HELX_P HELX_P11 11 SER A 201 ? ALA A 210 ? SER A 327 ALA A 336 1 ? 10 HELX_P HELX_P12 12 SER A 215 ? GLN A 219 ? SER A 341 GLN A 345 5 ? 5 HELX_P HELX_P13 13 SER A 229 ? ALA A 238 ? SER A 355 ALA A 364 1 ? 10 HELX_P HELX_P14 14 PHE A 242 ? SER A 257 ? PHE A 368 SER A 383 1 ? 16 HELX_P HELX_P15 15 LYS A 259 ? ARG A 273 ? LYS A 385 ARG A 399 1 ? 15 HELX_P HELX_P16 16 TYR A 277 ? ARG A 281 ? TYR A 403 ARG A 407 5 ? 5 HELX_P HELX_P17 17 ARG A 312 ? ASP A 331 ? ARG A 438 ASP A 457 1 ? 20 HELX_P HELX_P18 18 SER A 333 ? MET A 338 ? SER A 459 MET A 464 1 ? 6 HELX_P HELX_P19 19 PRO A 339 ? THR A 350 ? PRO A 465 THR A 476 1 ? 12 HELX_P HELX_P20 20 ASP A 353 ? SER A 359 ? ASP A 479 SER A 485 1 ? 7 HELX_P HELX_P21 21 THR A 365 ? GLN A 370 ? THR A 491 GLN A 496 1 ? 6 HELX_P HELX_P22 22 ASN A 371 ? ASN A 388 ? ASN A 497 ASN A 514 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 112 OD1 ? ? ? 1_555 C MN . MN ? ? A ASP 238 A MN 1002 1_555 ? ? ? ? ? ? ? 2.184 ? ? metalc2 metalc ? ? A GLU 114 OE2 ? ? ? 1_555 B ZN . ZN ? ? A GLU 240 A ZN 1001 1_555 ? ? ? ? ? ? ? 2.137 ? ? metalc3 metalc ? ? A ASP 239 OD2 ? ? ? 1_555 B ZN . ZN ? ? A ASP 365 A ZN 1001 1_555 ? ? ? ? ? ? ? 1.952 ? ? metalc4 metalc ? ? B ZN . ZN ? ? ? 1_555 D U . OP2 ? ? A ZN 1001 A U 3001 1_555 ? ? ? ? ? ? ? 2.158 ? ? metalc5 metalc ? ? B ZN . ZN ? ? ? 1_555 E HOH . O ? ? A ZN 1001 A HOH 3003 1_555 ? ? ? ? ? ? ? 2.233 ? ? metalc6 metalc ? ? C MN . MN ? ? ? 1_555 D U . OP1 ? ? A MN 1002 A U 3001 1_555 ? ? ? ? ? ? ? 2.137 ? ? metalc7 metalc ? ? C MN . MN ? ? ? 1_555 E HOH . O ? ? A MN 1002 A HOH 3004 1_555 ? ? ? ? ? ? ? 2.134 ? ? metalc8 metalc ? ? C MN . MN ? ? ? 1_555 E HOH . O ? ? A MN 1002 A HOH 3005 1_555 ? ? ? ? ? ? ? 2.216 ? ? metalc9 metalc ? ? C MN . MN ? ? ? 1_555 E HOH . O ? ? A MN 1002 A HOH 3006 1_555 ? ? ? ? ? ? ? 1.710 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ARG _struct_mon_prot_cis.label_seq_id 226 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ARG _struct_mon_prot_cis.auth_seq_id 352 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 227 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 353 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.03 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel A 5 6 ? parallel B 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 88 ? VAL A 90 ? ILE A 214 VAL A 216 A 2 ASP A 136 ? VAL A 139 ? ASP A 262 VAL A 265 A 3 ILE A 124 ? SER A 131 ? ILE A 250 SER A 257 A 4 GLU A 108 ? HIS A 116 ? GLU A 234 HIS A 242 A 5 VAL A 161 ? PHE A 164 ? VAL A 287 PHE A 290 A 6 LEU A 185 ? ASP A 187 ? LEU A 311 ASP A 313 B 1 ARG A 274 ? PHE A 275 ? ARG A 400 PHE A 401 B 2 VAL A 289 ? TYR A 290 ? VAL A 415 TYR A 416 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 90 ? N VAL A 216 O LEU A 138 ? O LEU A 264 A 2 3 O TYR A 137 ? O TYR A 263 N ILE A 130 ? N ILE A 256 A 3 4 O GLN A 129 ? O GLN A 255 N ASP A 112 ? N ASP A 238 A 4 5 N VAL A 111 ? N VAL A 237 O VAL A 163 ? O VAL A 289 A 5 6 N PHE A 164 ? N PHE A 290 O PHE A 186 ? O PHE A 312 B 1 2 N ARG A 274 ? N ARG A 400 O TYR A 290 ? O TYR A 416 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 1001 ? 5 'BINDING SITE FOR RESIDUE ZN A 1001' AC2 Software A MN 1002 ? 5 'BINDING SITE FOR RESIDUE MN A 1002' AC3 Software A U 3001 ? 16 'BINDING SITE FOR RESIDUE U A 3001' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASP A 112 ? ASP A 238 . ? 1_555 ? 2 AC1 5 GLU A 114 ? GLU A 240 . ? 1_555 ? 3 AC1 5 ASP A 239 ? ASP A 365 . ? 1_555 ? 4 AC1 5 U D . ? U A 3001 . ? 1_555 ? 5 AC1 5 HOH E . ? HOH A 3003 . ? 1_555 ? 6 AC2 5 ASP A 112 ? ASP A 238 . ? 1_555 ? 7 AC2 5 U D . ? U A 3001 . ? 1_555 ? 8 AC2 5 HOH E . ? HOH A 3004 . ? 1_555 ? 9 AC2 5 HOH E . ? HOH A 3005 . ? 1_555 ? 10 AC2 5 HOH E . ? HOH A 3006 . ? 1_555 ? 11 AC3 16 ASP A 112 ? ASP A 238 . ? 1_555 ? 12 AC3 16 LEU A 113 ? LEU A 239 . ? 1_555 ? 13 AC3 16 GLU A 114 ? GLU A 240 . ? 1_555 ? 14 AC3 16 HIS A 115 ? HIS A 241 . ? 1_555 ? 15 AC3 16 TRP A 173 ? TRP A 299 . ? 1_555 ? 16 AC3 16 LYS A 216 ? LYS A 342 . ? 1_555 ? 17 AC3 16 GLN A 219 ? GLN A 345 . ? 1_555 ? 18 AC3 16 TRP A 223 ? TRP A 349 . ? 1_555 ? 19 AC3 16 ASP A 239 ? ASP A 365 . ? 1_555 ? 20 AC3 16 ZN B . ? ZN A 1001 . ? 1_555 ? 21 AC3 16 MN C . ? MN A 1002 . ? 1_555 ? 22 AC3 16 HOH E . ? HOH A 3003 . ? 1_555 ? 23 AC3 16 HOH E . ? HOH A 3004 . ? 1_555 ? 24 AC3 16 HOH E . ? HOH A 3006 . ? 1_555 ? 25 AC3 16 HOH E . ? HOH A 3007 . ? 1_555 ? 26 AC3 16 HOH E . ? HOH A 3010 . ? 1_555 ? # _atom_sites.entry_id 2HBM _atom_sites.fract_transf_matrix[1][1] 0.009043 _atom_sites.fract_transf_matrix[1][2] 0.005221 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010443 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012606 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 127 127 GLY GLY A . n A 1 2 MET 2 128 128 MET MET A . n A 1 3 VAL 3 129 129 VAL VAL A . n A 1 4 GLU 4 130 130 GLU GLU A . n A 1 5 LYS 5 131 131 LYS LYS A . n A 1 6 PRO 6 132 132 PRO PRO A . n A 1 7 GLN 7 133 133 GLN GLN A . n A 1 8 LEU 8 134 134 LEU LEU A . n A 1 9 LYS 9 135 135 LYS LYS A . n A 1 10 PHE 10 136 136 PHE PHE A . n A 1 11 LYS 11 137 137 LYS LYS A . n A 1 12 SER 12 138 138 SER SER A . n A 1 13 PRO 13 139 139 PRO PRO A . n A 1 14 ILE 14 140 140 ILE ILE A . n A 1 15 ASP 15 141 141 ASP ASP A . n A 1 16 ASN 16 142 142 ASN ASN A . n A 1 17 SER 17 143 143 SER SER A . n A 1 18 GLU 18 144 144 GLU GLU A . n A 1 19 SER 19 145 145 SER SER A . n A 1 20 HIS 20 146 146 HIS HIS A . n A 1 21 PRO 21 147 147 PRO PRO A . n A 1 22 PHE 22 148 148 PHE PHE A . n A 1 23 ILE 23 149 149 ILE ILE A . n A 1 24 PRO 24 150 150 PRO PRO A . n A 1 25 LEU 25 151 151 LEU LEU A . n A 1 26 LEU 26 152 152 LEU LEU A . n A 1 27 LYS 27 153 153 LYS LYS A . n A 1 28 GLU 28 154 154 GLU GLU A . n A 1 29 LYS 29 155 155 LYS LYS A . n A 1 30 PRO 30 156 156 PRO PRO A . n A 1 31 ASN 31 157 157 ASN ASN A . n A 1 32 ALA 32 158 158 ALA ALA A . n A 1 33 LEU 33 159 159 LEU LEU A . n A 1 34 LYS 34 160 160 LYS LYS A . n A 1 35 PRO 35 161 161 PRO PRO A . n A 1 36 LEU 36 162 162 LEU LEU A . n A 1 37 SER 37 163 163 SER SER A . n A 1 38 GLU 38 164 164 GLU GLU A . n A 1 39 SER 39 165 165 SER SER A . n A 1 40 LEU 40 166 166 LEU LEU A . n A 1 41 ARG 41 167 167 ARG ARG A . n A 1 42 LEU 42 168 168 LEU LEU A . n A 1 43 VAL 43 169 169 VAL VAL A . n A 1 44 ASP 44 170 170 ASP ASP A . n A 1 45 ASP 45 171 171 ASP ASP A . n A 1 46 ASP 46 172 172 ASP ASP A . n A 1 47 GLU 47 173 173 GLU GLU A . n A 1 48 ASN 48 174 174 ASN ASN A . n A 1 49 ASN 49 175 175 ASN ASN A . n A 1 50 PRO 50 176 176 PRO PRO A . n A 1 51 SER 51 177 177 SER SER A . n A 1 52 HIS 52 178 178 HIS HIS A . n A 1 53 TYR 53 179 179 TYR TYR A . n A 1 54 PRO 54 180 180 PRO PRO A . n A 1 55 HIS 55 181 181 HIS HIS A . n A 1 56 PRO 56 182 182 PRO PRO A . n A 1 57 TYR 57 183 183 TYR TYR A . n A 1 58 GLU 58 184 184 GLU GLU A . n A 1 59 TYR 59 185 185 TYR TYR A . n A 1 60 GLU 60 186 186 GLU GLU A . n A 1 61 ILE 61 187 187 ILE ILE A . n A 1 62 ASP 62 188 188 ASP ASP A . n A 1 63 HIS 63 189 189 HIS HIS A . n A 1 64 GLN 64 190 190 GLN GLN A . n A 1 65 GLU 65 191 191 GLU GLU A . n A 1 66 TYR 66 192 192 TYR TYR A . n A 1 67 SER 67 193 193 SER SER A . n A 1 68 PRO 68 194 194 PRO PRO A . n A 1 69 GLU 69 195 195 GLU GLU A . n A 1 70 ILE 70 196 196 ILE ILE A . n A 1 71 LEU 71 197 197 LEU LEU A . n A 1 72 GLN 72 198 198 GLN GLN A . n A 1 73 ILE 73 199 199 ILE ILE A . n A 1 74 ARG 74 200 200 ARG ARG A . n A 1 75 GLU 75 201 201 GLU GLU A . n A 1 76 GLU 76 202 202 GLU GLU A . n A 1 77 ILE 77 203 203 ILE ILE A . n A 1 78 PRO 78 204 204 PRO PRO A . n A 1 79 SER 79 205 205 SER SER A . n A 1 80 LYS 80 206 206 LYS LYS A . n A 1 81 SER 81 207 207 SER SER A . n A 1 82 TRP 82 208 208 TRP TRP A . n A 1 83 ASP 83 209 209 ASP ASP A . n A 1 84 ASP 84 210 210 ASP ASP A . n A 1 85 SER 85 211 211 SER SER A . n A 1 86 VAL 86 212 212 VAL VAL A . n A 1 87 PRO 87 213 213 PRO PRO A . n A 1 88 ILE 88 214 214 ILE ILE A . n A 1 89 TRP 89 215 215 TRP TRP A . n A 1 90 VAL 90 216 216 VAL VAL A . n A 1 91 ASP 91 217 217 ASP ASP A . n A 1 92 THR 92 218 218 THR THR A . n A 1 93 SER 93 219 219 SER SER A . n A 1 94 THR 94 220 220 THR THR A . n A 1 95 GLU 95 221 221 GLU GLU A . n A 1 96 LEU 96 222 222 LEU LEU A . n A 1 97 GLU 97 223 223 GLU GLU A . n A 1 98 SER 98 224 224 SER SER A . n A 1 99 MET 99 225 225 MET MET A . n A 1 100 LEU 100 226 226 LEU LEU A . n A 1 101 GLU 101 227 227 GLU GLU A . n A 1 102 ASP 102 228 228 ASP ASP A . n A 1 103 LEU 103 229 229 LEU LEU A . n A 1 104 LYS 104 230 230 LYS LYS A . n A 1 105 ASN 105 231 231 ASN ASN A . n A 1 106 THR 106 232 232 THR THR A . n A 1 107 LYS 107 233 233 LYS LYS A . n A 1 108 GLU 108 234 234 GLU GLU A . n A 1 109 ILE 109 235 235 ILE ILE A . n A 1 110 ALA 110 236 236 ALA ALA A . n A 1 111 VAL 111 237 237 VAL VAL A . n A 1 112 ASP 112 238 238 ASP ASP A . n A 1 113 LEU 113 239 239 LEU LEU A . n A 1 114 GLU 114 240 240 GLU GLU A . n A 1 115 HIS 115 241 241 HIS HIS A . n A 1 116 HIS 116 242 242 HIS HIS A . n A 1 117 ASP 117 243 243 ASP ASP A . n A 1 118 TYR 118 244 244 TYR TYR A . n A 1 119 ARG 119 245 245 ARG ARG A . n A 1 120 SER 120 246 246 SER SER A . n A 1 121 TYR 121 247 247 TYR TYR A . n A 1 122 TYR 122 248 248 TYR TYR A . n A 1 123 GLY 123 249 249 GLY GLY A . n A 1 124 ILE 124 250 250 ILE ILE A . n A 1 125 VAL 125 251 251 VAL VAL A . n A 1 126 CYS 126 252 252 CYS CYS A . n A 1 127 LEU 127 253 253 LEU LEU A . n A 1 128 MET 128 254 254 MET MET A . n A 1 129 GLN 129 255 255 GLN GLN A . n A 1 130 ILE 130 256 256 ILE ILE A . n A 1 131 SER 131 257 257 SER SER A . n A 1 132 THR 132 258 258 THR THR A . n A 1 133 ARG 133 259 259 ARG ARG A . n A 1 134 GLU 134 260 260 GLU GLU A . n A 1 135 ARG 135 261 261 ARG ARG A . n A 1 136 ASP 136 262 262 ASP ASP A . n A 1 137 TYR 137 263 263 TYR TYR A . n A 1 138 LEU 138 264 264 LEU LEU A . n A 1 139 VAL 139 265 265 VAL VAL A . n A 1 140 ASP 140 266 266 ASP ASP A . n A 1 141 THR 141 267 267 THR THR A . n A 1 142 LEU 142 268 268 LEU LEU A . n A 1 143 LYS 143 269 269 LYS LYS A . n A 1 144 LEU 144 270 270 LEU LEU A . n A 1 145 ARG 145 271 271 ARG ARG A . n A 1 146 GLU 146 272 272 GLU GLU A . n A 1 147 ASN 147 273 273 ASN ASN A . n A 1 148 LEU 148 274 274 LEU LEU A . n A 1 149 HIS 149 275 275 HIS HIS A . n A 1 150 ILE 150 276 276 ILE ILE A . n A 1 151 LEU 151 277 277 LEU LEU A . n A 1 152 ASN 152 278 278 ASN ASN A . n A 1 153 GLU 153 279 279 GLU GLU A . n A 1 154 VAL 154 280 280 VAL VAL A . n A 1 155 PHE 155 281 281 PHE PHE A . n A 1 156 THR 156 282 282 THR THR A . n A 1 157 ASN 157 283 283 ASN ASN A . n A 1 158 PRO 158 284 284 PRO PRO A . n A 1 159 SER 159 285 285 SER SER A . n A 1 160 ILE 160 286 286 ILE ILE A . n A 1 161 VAL 161 287 287 VAL VAL A . n A 1 162 LYS 162 288 288 LYS LYS A . n A 1 163 VAL 163 289 289 VAL VAL A . n A 1 164 PHE 164 290 290 PHE PHE A . n A 1 165 HIS 165 291 291 HIS HIS A . n A 1 166 GLY 166 292 292 GLY GLY A . n A 1 167 ALA 167 293 293 ALA ALA A . n A 1 168 PHE 168 294 294 PHE PHE A . n A 1 169 MET 169 295 295 MET MET A . n A 1 170 ASP 170 296 296 ASP ASP A . n A 1 171 ILE 171 297 297 ILE ILE A . n A 1 172 ILE 172 298 298 ILE ILE A . n A 1 173 TRP 173 299 299 TRP TRP A . n A 1 174 LEU 174 300 300 LEU LEU A . n A 1 175 GLN 175 301 301 GLN GLN A . n A 1 176 ARG 176 302 302 ARG ARG A . n A 1 177 ASP 177 303 303 ASP ASP A . n A 1 178 LEU 178 304 304 LEU LEU A . n A 1 179 GLY 179 305 305 GLY GLY A . n A 1 180 LEU 180 306 306 LEU LEU A . n A 1 181 TYR 181 307 307 TYR TYR A . n A 1 182 VAL 182 308 308 VAL VAL A . n A 1 183 VAL 183 309 309 VAL VAL A . n A 1 184 GLY 184 310 310 GLY GLY A . n A 1 185 LEU 185 311 311 LEU LEU A . n A 1 186 PHE 186 312 312 PHE PHE A . n A 1 187 ASP 187 313 313 ASP ASP A . n A 1 188 THR 188 314 314 THR THR A . n A 1 189 TYR 189 315 315 TYR TYR A . n A 1 190 HIS 190 316 316 HIS HIS A . n A 1 191 ALA 191 317 317 ALA ALA A . n A 1 192 SER 192 318 318 SER SER A . n A 1 193 LYS 193 319 319 LYS LYS A . n A 1 194 ALA 194 320 320 ALA ALA A . n A 1 195 ILE 195 321 321 ILE ILE A . n A 1 196 GLY 196 322 322 GLY GLY A . n A 1 197 LEU 197 323 323 LEU LEU A . n A 1 198 PRO 198 324 324 PRO PRO A . n A 1 199 ARG 199 325 325 ARG ARG A . n A 1 200 HIS 200 326 326 HIS HIS A . n A 1 201 SER 201 327 327 SER SER A . n A 1 202 LEU 202 328 328 LEU LEU A . n A 1 203 ALA 203 329 329 ALA ALA A . n A 1 204 TYR 204 330 330 TYR TYR A . n A 1 205 LEU 205 331 331 LEU LEU A . n A 1 206 LEU 206 332 332 LEU LEU A . n A 1 207 GLU 207 333 333 GLU GLU A . n A 1 208 ASN 208 334 334 ASN ASN A . n A 1 209 PHE 209 335 335 PHE PHE A . n A 1 210 ALA 210 336 336 ALA ALA A . n A 1 211 ASN 211 337 337 ASN ASN A . n A 1 212 PHE 212 338 338 PHE PHE A . n A 1 213 LYS 213 339 339 LYS LYS A . n A 1 214 THR 214 340 340 THR THR A . n A 1 215 SER 215 341 341 SER SER A . n A 1 216 LYS 216 342 342 LYS LYS A . n A 1 217 LYS 217 343 343 LYS LYS A . n A 1 218 TYR 218 344 344 TYR TYR A . n A 1 219 GLN 219 345 345 GLN GLN A . n A 1 220 LEU 220 346 346 LEU LEU A . n A 1 221 ALA 221 347 347 ALA ALA A . n A 1 222 ASP 222 348 348 ASP ASP A . n A 1 223 TRP 223 349 349 TRP TRP A . n A 1 224 ARG 224 350 350 ARG ARG A . n A 1 225 ILE 225 351 351 ILE ILE A . n A 1 226 ARG 226 352 352 ARG ARG A . n A 1 227 PRO 227 353 353 PRO PRO A . n A 1 228 LEU 228 354 354 LEU LEU A . n A 1 229 SER 229 355 355 SER SER A . n A 1 230 LYS 230 356 356 LYS LYS A . n A 1 231 PRO 231 357 357 PRO PRO A . n A 1 232 MET 232 358 358 MET MET A . n A 1 233 THR 233 359 359 THR THR A . n A 1 234 ALA 234 360 360 ALA ALA A . n A 1 235 ALA 235 361 361 ALA ALA A . n A 1 236 ALA 236 362 362 ALA ALA A . n A 1 237 ARG 237 363 363 ARG ARG A . n A 1 238 ALA 238 364 364 ALA ALA A . n A 1 239 ASP 239 365 365 ASP ASP A . n A 1 240 THR 240 366 366 THR THR A . n A 1 241 HIS 241 367 367 HIS HIS A . n A 1 242 PHE 242 368 368 PHE PHE A . n A 1 243 LEU 243 369 369 LEU LEU A . n A 1 244 LEU 244 370 370 LEU LEU A . n A 1 245 ASN 245 371 371 ASN ASN A . n A 1 246 ILE 246 372 372 ILE ILE A . n A 1 247 TYR 247 373 373 TYR TYR A . n A 1 248 ASP 248 374 374 ASP ASP A . n A 1 249 GLN 249 375 375 GLN GLN A . n A 1 250 LEU 250 376 376 LEU LEU A . n A 1 251 ARG 251 377 377 ARG ARG A . n A 1 252 ASN 252 378 378 ASN ASN A . n A 1 253 LYS 253 379 379 LYS LYS A . n A 1 254 LEU 254 380 380 LEU LEU A . n A 1 255 ILE 255 381 381 ILE ILE A . n A 1 256 GLU 256 382 382 GLU GLU A . n A 1 257 SER 257 383 383 SER SER A . n A 1 258 ASN 258 384 384 ASN ASN A . n A 1 259 LYS 259 385 385 LYS LYS A . n A 1 260 LEU 260 386 386 LEU LEU A . n A 1 261 ALA 261 387 387 ALA ALA A . n A 1 262 GLY 262 388 388 GLY GLY A . n A 1 263 VAL 263 389 389 VAL VAL A . n A 1 264 LEU 264 390 390 LEU LEU A . n A 1 265 TYR 265 391 391 TYR TYR A . n A 1 266 GLU 266 392 392 GLU GLU A . n A 1 267 SER 267 393 393 SER SER A . n A 1 268 ARG 268 394 394 ARG ARG A . n A 1 269 ASN 269 395 395 ASN ASN A . n A 1 270 VAL 270 396 396 VAL VAL A . n A 1 271 ALA 271 397 397 ALA ALA A . n A 1 272 LYS 272 398 398 LYS LYS A . n A 1 273 ARG 273 399 399 ARG ARG A . n A 1 274 ARG 274 400 400 ARG ARG A . n A 1 275 PHE 275 401 401 PHE PHE A . n A 1 276 GLU 276 402 402 GLU GLU A . n A 1 277 TYR 277 403 403 TYR TYR A . n A 1 278 SER 278 404 404 SER SER A . n A 1 279 LYS 279 405 405 LYS LYS A . n A 1 280 TYR 280 406 406 TYR TYR A . n A 1 281 ARG 281 407 407 ARG ARG A . n A 1 282 PRO 282 408 408 PRO PRO A . n A 1 283 LEU 283 409 409 LEU LEU A . n A 1 284 THR 284 410 410 THR THR A . n A 1 285 PRO 285 411 411 PRO PRO A . n A 1 286 SER 286 412 412 SER SER A . n A 1 287 SER 287 413 413 SER SER A . n A 1 288 GLU 288 414 414 GLU GLU A . n A 1 289 VAL 289 415 415 VAL VAL A . n A 1 290 TYR 290 416 416 TYR TYR A . n A 1 291 SER 291 417 417 SER SER A . n A 1 292 PRO 292 418 418 PRO PRO A . n A 1 293 ILE 293 419 419 ILE ILE A . n A 1 294 GLU 294 420 420 GLU GLU A . n A 1 295 LYS 295 421 421 LYS LYS A . n A 1 296 GLU 296 422 422 GLU GLU A . n A 1 297 SER 297 423 423 SER SER A . n A 1 298 PRO 298 424 424 PRO PRO A . n A 1 299 TRP 299 425 425 TRP TRP A . n A 1 300 LYS 300 426 426 LYS LYS A . n A 1 301 ILE 301 427 427 ILE ILE A . n A 1 302 LEU 302 428 428 LEU LEU A . n A 1 303 MET 303 429 429 MET MET A . n A 1 304 TYR 304 430 430 TYR TYR A . n A 1 305 GLN 305 431 431 GLN GLN A . n A 1 306 TYR 306 432 432 TYR TYR A . n A 1 307 ASN 307 433 433 ASN ASN A . n A 1 308 ILE 308 434 434 ILE ILE A . n A 1 309 PRO 309 435 435 PRO PRO A . n A 1 310 PRO 310 436 436 PRO PRO A . n A 1 311 GLU 311 437 437 GLU GLU A . n A 1 312 ARG 312 438 438 ARG ARG A . n A 1 313 GLU 313 439 439 GLU GLU A . n A 1 314 VAL 314 440 440 VAL VAL A . n A 1 315 LEU 315 441 441 LEU LEU A . n A 1 316 VAL 316 442 442 VAL VAL A . n A 1 317 ARG 317 443 443 ARG ARG A . n A 1 318 GLU 318 444 444 GLU GLU A . n A 1 319 LEU 319 445 445 LEU LEU A . n A 1 320 TYR 320 446 446 TYR TYR A . n A 1 321 GLN 321 447 447 GLN GLN A . n A 1 322 TRP 322 448 448 TRP TRP A . n A 1 323 ARG 323 449 449 ARG ARG A . n A 1 324 ASP 324 450 450 ASP ASP A . n A 1 325 LEU 325 451 451 LEU LEU A . n A 1 326 ILE 326 452 452 ILE ILE A . n A 1 327 ALA 327 453 453 ALA ALA A . n A 1 328 ARG 328 454 454 ARG ARG A . n A 1 329 ARG 329 455 455 ARG ARG A . n A 1 330 ASP 330 456 456 ASP ASP A . n A 1 331 ASP 331 457 457 ASP ASP A . n A 1 332 GLU 332 458 458 GLU GLU A . n A 1 333 SER 333 459 459 SER SER A . n A 1 334 PRO 334 460 460 PRO PRO A . n A 1 335 ARG 335 461 461 ARG ARG A . n A 1 336 PHE 336 462 462 PHE PHE A . n A 1 337 VAL 337 463 463 VAL VAL A . n A 1 338 MET 338 464 464 MET MET A . n A 1 339 PRO 339 465 465 PRO PRO A . n A 1 340 ASN 340 466 466 ASN ASN A . n A 1 341 GLN 341 467 467 GLN GLN A . n A 1 342 LEU 342 468 468 LEU LEU A . n A 1 343 LEU 343 469 469 LEU LEU A . n A 1 344 ALA 344 470 470 ALA ALA A . n A 1 345 ALA 345 471 471 ALA ALA A . n A 1 346 LEU 346 472 472 LEU LEU A . n A 1 347 VAL 347 473 473 VAL VAL A . n A 1 348 ALA 348 474 474 ALA ALA A . n A 1 349 TYR 349 475 475 TYR TYR A . n A 1 350 THR 350 476 476 THR THR A . n A 1 351 PRO 351 477 477 PRO PRO A . n A 1 352 THR 352 478 478 THR THR A . n A 1 353 ASP 353 479 479 ASP ASP A . n A 1 354 VAL 354 480 480 VAL VAL A . n A 1 355 ILE 355 481 481 ILE ILE A . n A 1 356 GLY 356 482 482 GLY GLY A . n A 1 357 VAL 357 483 483 VAL VAL A . n A 1 358 VAL 358 484 484 VAL VAL A . n A 1 359 SER 359 485 485 SER SER A . n A 1 360 LEU 360 486 486 LEU LEU A . n A 1 361 THR 361 487 487 THR THR A . n A 1 362 ASN 362 488 488 ASN ASN A . n A 1 363 GLY 363 489 489 GLY GLY A . n A 1 364 VAL 364 490 490 VAL VAL A . n A 1 365 THR 365 491 491 THR THR A . n A 1 366 GLU 366 492 492 GLU GLU A . n A 1 367 HIS 367 493 493 HIS HIS A . n A 1 368 VAL 368 494 494 VAL VAL A . n A 1 369 ARG 369 495 495 ARG ARG A . n A 1 370 GLN 370 496 496 GLN GLN A . n A 1 371 ASN 371 497 497 ASN ASN A . n A 1 372 ALA 372 498 498 ALA ALA A . n A 1 373 LYS 373 499 499 LYS LYS A . n A 1 374 LEU 374 500 500 LEU LEU A . n A 1 375 LEU 375 501 501 LEU LEU A . n A 1 376 ALA 376 502 502 ALA ALA A . n A 1 377 ASN 377 503 503 ASN ASN A . n A 1 378 LEU 378 504 504 LEU LEU A . n A 1 379 ILE 379 505 505 ILE ILE A . n A 1 380 ARG 380 506 506 ARG ARG A . n A 1 381 ASP 381 507 507 ASP ASP A . n A 1 382 ALA 382 508 508 ALA ALA A . n A 1 383 LEU 383 509 509 LEU LEU A . n A 1 384 ARG 384 510 510 ARG ARG A . n A 1 385 ASN 385 511 511 ASN ASN A . n A 1 386 ILE 386 512 512 ILE ILE A . n A 1 387 LYS 387 513 513 LYS LYS A . n A 1 388 ASN 388 514 514 ASN ASN A . n A 1 389 THR 389 515 515 THR THR A . n A 1 390 ASN 390 516 516 ASN ASN A . n A 1 391 GLU 391 517 ? ? ? A . n A 1 392 GLU 392 518 ? ? ? A . n A 1 393 ALA 393 519 ? ? ? A . n A 1 394 THR 394 520 ? ? ? A . n A 1 395 PRO 395 521 ? ? ? A . n A 1 396 ILE 396 522 ? ? ? A . n A 1 397 PRO 397 523 ? ? ? A . n A 1 398 SER 398 524 ? ? ? A . n A 1 399 SER 399 525 ? ? ? A . n A 1 400 GLU 400 526 ? ? ? A . n A 1 401 THR 401 527 ? ? ? A . n A 1 402 LYS 402 528 ? ? ? A . n A 1 403 ALA 403 529 ? ? ? A . n A 1 404 ASP 404 530 ? ? ? A . n A 1 405 GLY 405 531 ? ? ? A . n A 1 406 ILE 406 532 ? ? ? A . n A 1 407 LEU 407 533 ? ? ? A . n A 1 408 LEU 408 534 ? ? ? A . n A 1 409 GLU 409 535 ? ? ? A . n A 1 410 THR 410 536 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 1001 1001 ZN ZN2 A . C 3 MN 1 1002 1002 MN MN A . D 4 U 1 3001 1 U U A . E 5 HOH 1 3002 1 HOH WAT A . E 5 HOH 2 3003 2 HOH WAT A . E 5 HOH 3 3004 3 HOH WAT A . E 5 HOH 4 3005 4 HOH WAT A . E 5 HOH 5 3006 5 HOH WAT A . E 5 HOH 6 3007 6 HOH WAT A . E 5 HOH 7 3008 7 HOH WAT A . E 5 HOH 8 3009 8 HOH WAT A . E 5 HOH 9 3010 9 HOH WAT A . E 5 HOH 10 3011 10 HOH WAT A . E 5 HOH 11 3012 11 HOH WAT A . E 5 HOH 12 3013 12 HOH WAT A . E 5 HOH 13 3014 13 HOH WAT A . E 5 HOH 14 3015 14 HOH WAT A . E 5 HOH 15 3016 15 HOH WAT A . E 5 HOH 16 3017 16 HOH WAT A . E 5 HOH 17 3018 17 HOH WAT A . E 5 HOH 18 3019 18 HOH WAT A . E 5 HOH 19 3020 19 HOH WAT A . E 5 HOH 20 3021 20 HOH WAT A . E 5 HOH 21 3022 21 HOH WAT A . E 5 HOH 22 3023 22 HOH WAT A . E 5 HOH 23 3024 23 HOH WAT A . E 5 HOH 24 3025 24 HOH WAT A . E 5 HOH 25 3026 25 HOH WAT A . E 5 HOH 26 3027 26 HOH WAT A . E 5 HOH 27 3028 27 HOH WAT A . E 5 HOH 28 3029 28 HOH WAT A . E 5 HOH 29 3030 29 HOH WAT A . E 5 HOH 30 3031 30 HOH WAT A . E 5 HOH 31 3032 31 HOH WAT A . E 5 HOH 32 3033 32 HOH WAT A . E 5 HOH 33 3034 33 HOH WAT A . E 5 HOH 34 3035 34 HOH WAT A . E 5 HOH 35 3036 35 HOH WAT A . E 5 HOH 36 3037 36 HOH WAT A . E 5 HOH 37 3038 37 HOH WAT A . E 5 HOH 38 3039 38 HOH WAT A . E 5 HOH 39 3040 39 HOH WAT A . E 5 HOH 40 3041 40 HOH WAT A . E 5 HOH 41 3042 41 HOH WAT A . E 5 HOH 42 3043 42 HOH WAT A . E 5 HOH 43 3044 43 HOH WAT A . E 5 HOH 44 3045 44 HOH WAT A . E 5 HOH 45 3046 45 HOH WAT A . E 5 HOH 46 3047 46 HOH WAT A . E 5 HOH 47 3048 47 HOH WAT A . E 5 HOH 48 3049 48 HOH WAT A . E 5 HOH 49 3050 49 HOH WAT A . E 5 HOH 50 3051 50 HOH WAT A . E 5 HOH 51 3052 51 HOH WAT A . E 5 HOH 52 3053 52 HOH WAT A . E 5 HOH 53 3054 53 HOH WAT A . E 5 HOH 54 3055 54 HOH WAT A . E 5 HOH 55 3056 55 HOH WAT A . E 5 HOH 56 3057 56 HOH WAT A . E 5 HOH 57 3058 57 HOH WAT A . E 5 HOH 58 3059 58 HOH WAT A . E 5 HOH 59 3060 59 HOH WAT A . E 5 HOH 60 3061 60 HOH WAT A . E 5 HOH 61 3062 61 HOH WAT A . E 5 HOH 62 3063 62 HOH WAT A . E 5 HOH 63 3064 63 HOH WAT A . E 5 HOH 64 3065 64 HOH WAT A . E 5 HOH 65 3066 65 HOH WAT A . E 5 HOH 66 3067 66 HOH WAT A . E 5 HOH 67 3068 67 HOH WAT A . E 5 HOH 68 3069 68 HOH WAT A . E 5 HOH 69 3070 69 HOH WAT A . E 5 HOH 70 3071 70 HOH WAT A . E 5 HOH 71 3072 71 HOH WAT A . E 5 HOH 72 3073 72 HOH WAT A . E 5 HOH 73 3074 73 HOH WAT A . E 5 HOH 74 3075 74 HOH WAT A . E 5 HOH 75 3076 75 HOH WAT A . E 5 HOH 76 3077 76 HOH WAT A . E 5 HOH 77 3078 77 HOH WAT A . E 5 HOH 78 3079 78 HOH WAT A . E 5 HOH 79 3080 79 HOH WAT A . E 5 HOH 80 3081 80 HOH WAT A . E 5 HOH 81 3082 81 HOH WAT A . E 5 HOH 82 3083 82 HOH WAT A . E 5 HOH 83 3084 83 HOH WAT A . E 5 HOH 84 3085 85 HOH WAT A . E 5 HOH 85 3086 86 HOH WAT A . E 5 HOH 86 3087 87 HOH WAT A . E 5 HOH 87 3088 89 HOH WAT A . E 5 HOH 88 3089 90 HOH WAT A . E 5 HOH 89 3090 91 HOH WAT A . E 5 HOH 90 3091 92 HOH WAT A . E 5 HOH 91 3092 93 HOH WAT A . E 5 HOH 92 3093 94 HOH WAT A . E 5 HOH 93 3094 95 HOH WAT A . E 5 HOH 94 3095 96 HOH WAT A . E 5 HOH 95 3096 97 HOH WAT A . E 5 HOH 96 3097 98 HOH WAT A . E 5 HOH 97 3098 99 HOH WAT A . E 5 HOH 98 3099 100 HOH WAT A . E 5 HOH 99 3100 101 HOH WAT A . E 5 HOH 100 3101 102 HOH WAT A . E 5 HOH 101 3102 103 HOH WAT A . E 5 HOH 102 3103 104 HOH WAT A . E 5 HOH 103 3104 105 HOH WAT A . E 5 HOH 104 3105 106 HOH WAT A . E 5 HOH 105 3106 107 HOH WAT A . E 5 HOH 106 3107 108 HOH WAT A . E 5 HOH 107 3108 110 HOH WAT A . E 5 HOH 108 3109 111 HOH WAT A . E 5 HOH 109 3110 112 HOH WAT A . E 5 HOH 110 3111 114 HOH WAT A . E 5 HOH 111 3112 115 HOH WAT A . E 5 HOH 112 3113 116 HOH WAT A . E 5 HOH 113 3114 117 HOH WAT A . E 5 HOH 114 3115 118 HOH WAT A . E 5 HOH 115 3116 119 HOH WAT A . E 5 HOH 116 3117 120 HOH WAT A . E 5 HOH 117 3118 121 HOH WAT A . E 5 HOH 118 3119 122 HOH WAT A . E 5 HOH 119 3120 123 HOH WAT A . E 5 HOH 120 3121 124 HOH WAT A . E 5 HOH 121 3122 125 HOH WAT A . E 5 HOH 122 3123 127 HOH WAT A . E 5 HOH 123 3124 128 HOH WAT A . E 5 HOH 124 3125 129 HOH WAT A . E 5 HOH 125 3126 130 HOH WAT A . E 5 HOH 126 3127 131 HOH WAT A . E 5 HOH 127 3128 133 HOH WAT A . E 5 HOH 128 3129 134 HOH WAT A . E 5 HOH 129 3130 135 HOH WAT A . E 5 HOH 130 3131 136 HOH WAT A . E 5 HOH 131 3132 137 HOH WAT A . E 5 HOH 132 3133 138 HOH WAT A . E 5 HOH 133 3134 140 HOH WAT A . E 5 HOH 134 3135 141 HOH WAT A . E 5 HOH 135 3136 142 HOH WAT A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 112 ? A ASP 238 ? 1_555 MN ? C MN . ? A MN 1002 ? 1_555 OP1 ? D U . ? A U 3001 ? 1_555 150.2 ? 2 OD1 ? A ASP 112 ? A ASP 238 ? 1_555 MN ? C MN . ? A MN 1002 ? 1_555 O ? E HOH . ? A HOH 3004 ? 1_555 95.2 ? 3 OP1 ? D U . ? A U 3001 ? 1_555 MN ? C MN . ? A MN 1002 ? 1_555 O ? E HOH . ? A HOH 3004 ? 1_555 85.5 ? 4 OD1 ? A ASP 112 ? A ASP 238 ? 1_555 MN ? C MN . ? A MN 1002 ? 1_555 O ? E HOH . ? A HOH 3005 ? 1_555 87.7 ? 5 OP1 ? D U . ? A U 3001 ? 1_555 MN ? C MN . ? A MN 1002 ? 1_555 O ? E HOH . ? A HOH 3005 ? 1_555 121.8 ? 6 O ? E HOH . ? A HOH 3004 ? 1_555 MN ? C MN . ? A MN 1002 ? 1_555 O ? E HOH . ? A HOH 3005 ? 1_555 81.6 ? 7 OD1 ? A ASP 112 ? A ASP 238 ? 1_555 MN ? C MN . ? A MN 1002 ? 1_555 O ? E HOH . ? A HOH 3006 ? 1_555 87.7 ? 8 OP1 ? D U . ? A U 3001 ? 1_555 MN ? C MN . ? A MN 1002 ? 1_555 O ? E HOH . ? A HOH 3006 ? 1_555 98.3 ? 9 O ? E HOH . ? A HOH 3004 ? 1_555 MN ? C MN . ? A MN 1002 ? 1_555 O ? E HOH . ? A HOH 3006 ? 1_555 166.9 ? 10 O ? E HOH . ? A HOH 3005 ? 1_555 MN ? C MN . ? A MN 1002 ? 1_555 O ? E HOH . ? A HOH 3006 ? 1_555 85.8 ? 11 OE2 ? A GLU 114 ? A GLU 240 ? 1_555 ZN ? B ZN . ? A ZN 1001 ? 1_555 OD2 ? A ASP 239 ? A ASP 365 ? 1_555 109.3 ? 12 OE2 ? A GLU 114 ? A GLU 240 ? 1_555 ZN ? B ZN . ? A ZN 1001 ? 1_555 OP2 ? D U . ? A U 3001 ? 1_555 125.8 ? 13 OD2 ? A ASP 239 ? A ASP 365 ? 1_555 ZN ? B ZN . ? A ZN 1001 ? 1_555 OP2 ? D U . ? A U 3001 ? 1_555 124.8 ? 14 OE2 ? A GLU 114 ? A GLU 240 ? 1_555 ZN ? B ZN . ? A ZN 1001 ? 1_555 O ? E HOH . ? A HOH 3003 ? 1_555 85.9 ? 15 OD2 ? A ASP 239 ? A ASP 365 ? 1_555 ZN ? B ZN . ? A ZN 1001 ? 1_555 O ? E HOH . ? A HOH 3003 ? 1_555 98.2 ? 16 OP2 ? D U . ? A U 3001 ? 1_555 ZN ? B ZN . ? A ZN 1001 ? 1_555 O ? E HOH . ? A HOH 3003 ? 1_555 86.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-07-25 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2021-11-10 6 'Structure model' 1 5 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' 6 6 'Structure model' 'Data collection' 7 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' pdbx_struct_conn_angle 4 5 'Structure model' struct_conn 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site 7 6 'Structure model' chem_comp_atom 8 6 'Structure model' chem_comp_bond 9 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.contact_author' 3 4 'Structure model' '_software.contact_author_email' 4 4 'Structure model' '_software.date' 5 4 'Structure model' '_software.language' 6 4 'Structure model' '_software.location' 7 4 'Structure model' '_software.name' 8 4 'Structure model' '_software.type' 9 4 'Structure model' '_software.version' 10 5 'Structure model' '_database_2.pdbx_DOI' 11 5 'Structure model' '_database_2.pdbx_database_accession' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.value' 23 5 'Structure model' '_struct_conn.pdbx_dist_value' 24 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 5 'Structure model' '_struct_ref_seq_dif.details' 30 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 31 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 32 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 3 PDB_EXTRACT 1.701 'Nov. 1, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 MAR345 . ? ? ? ? 'data collection' ? ? ? 5 CNS . ? ? ? ? phasing ? ? ? 6 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 CE _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 MET _pdbx_validate_symm_contact.auth_seq_id_1 429 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 CE _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 MET _pdbx_validate_symm_contact.auth_seq_id_2 429 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 5_555 _pdbx_validate_symm_contact.dist 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 129 ? ? 49.00 84.62 2 1 LYS A 155 ? ? -160.64 86.03 3 1 PRO A 161 ? ? -29.97 143.53 4 1 SER A 163 ? ? -47.30 -76.92 5 1 ARG A 167 ? ? -146.91 -100.95 6 1 LEU A 168 ? ? 168.41 175.16 7 1 ASP A 170 ? ? -28.84 142.36 8 1 ASP A 171 ? ? -15.68 139.65 9 1 ASN A 175 ? ? 171.61 122.39 10 1 PRO A 182 ? ? -49.94 -10.02 11 1 TYR A 185 ? ? -59.22 -72.39 12 1 GLU A 195 ? ? -67.97 7.83 13 1 ASP A 217 ? ? -145.75 22.84 14 1 ASN A 231 ? ? -94.89 32.53 15 1 ASP A 243 ? ? -140.43 34.42 16 1 LEU A 274 ? ? -56.28 2.23 17 1 ALA A 336 ? ? -146.14 13.35 18 1 ASN A 337 ? ? 33.65 71.92 19 1 LEU A 346 ? ? -140.69 -1.38 20 1 TRP A 349 ? ? -67.34 7.97 21 1 PRO A 418 ? ? -39.69 130.14 22 1 GLU A 422 ? ? -135.46 -134.74 23 1 LYS A 426 ? ? -106.06 -131.51 24 1 TYR A 430 ? ? -58.23 9.89 25 1 GLN A 431 ? ? -1.05 87.25 26 1 TYR A 432 ? ? -78.49 35.65 27 1 ILE A 434 ? ? -69.29 98.58 28 1 PRO A 435 ? ? -39.45 166.95 29 1 PRO A 436 ? ? -55.18 -74.24 30 1 ARG A 438 ? ? -59.60 15.90 31 1 MET A 464 ? ? -173.95 110.12 32 1 THR A 476 ? ? 37.90 61.32 33 1 THR A 487 ? ? -9.86 -51.61 34 1 ASN A 514 ? ? -63.59 -97.17 35 1 THR A 515 ? ? -2.35 -79.70 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 517 ? A GLU 391 2 1 Y 1 A GLU 518 ? A GLU 392 3 1 Y 1 A ALA 519 ? A ALA 393 4 1 Y 1 A THR 520 ? A THR 394 5 1 Y 1 A PRO 521 ? A PRO 395 6 1 Y 1 A ILE 522 ? A ILE 396 7 1 Y 1 A PRO 523 ? A PRO 397 8 1 Y 1 A SER 524 ? A SER 398 9 1 Y 1 A SER 525 ? A SER 399 10 1 Y 1 A GLU 526 ? A GLU 400 11 1 Y 1 A THR 527 ? A THR 401 12 1 Y 1 A LYS 528 ? A LYS 402 13 1 Y 1 A ALA 529 ? A ALA 403 14 1 Y 1 A ASP 530 ? A ASP 404 15 1 Y 1 A GLY 531 ? A GLY 405 16 1 Y 1 A ILE 532 ? A ILE 406 17 1 Y 1 A LEU 533 ? A LEU 407 18 1 Y 1 A LEU 534 ? A LEU 408 19 1 Y 1 A GLU 535 ? A GLU 409 20 1 Y 1 A THR 536 ? A THR 410 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 MN MN MN N N 250 PHE N N N N 251 PHE CA C N S 252 PHE C C N N 253 PHE O O N N 254 PHE CB C N N 255 PHE CG C Y N 256 PHE CD1 C Y N 257 PHE CD2 C Y N 258 PHE CE1 C Y N 259 PHE CE2 C Y N 260 PHE CZ C Y N 261 PHE OXT O N N 262 PHE H H N N 263 PHE H2 H N N 264 PHE HA H N N 265 PHE HB2 H N N 266 PHE HB3 H N N 267 PHE HD1 H N N 268 PHE HD2 H N N 269 PHE HE1 H N N 270 PHE HE2 H N N 271 PHE HZ H N N 272 PHE HXT H N N 273 PRO N N N N 274 PRO CA C N S 275 PRO C C N N 276 PRO O O N N 277 PRO CB C N N 278 PRO CG C N N 279 PRO CD C N N 280 PRO OXT O N N 281 PRO H H N N 282 PRO HA H N N 283 PRO HB2 H N N 284 PRO HB3 H N N 285 PRO HG2 H N N 286 PRO HG3 H N N 287 PRO HD2 H N N 288 PRO HD3 H N N 289 PRO HXT H N N 290 SER N N N N 291 SER CA C N S 292 SER C C N N 293 SER O O N N 294 SER CB C N N 295 SER OG O N N 296 SER OXT O N N 297 SER H H N N 298 SER H2 H N N 299 SER HA H N N 300 SER HB2 H N N 301 SER HB3 H N N 302 SER HG H N N 303 SER HXT H N N 304 THR N N N N 305 THR CA C N S 306 THR C C N N 307 THR O O N N 308 THR CB C N R 309 THR OG1 O N N 310 THR CG2 C N N 311 THR OXT O N N 312 THR H H N N 313 THR H2 H N N 314 THR HA H N N 315 THR HB H N N 316 THR HG1 H N N 317 THR HG21 H N N 318 THR HG22 H N N 319 THR HG23 H N N 320 THR HXT H N N 321 TRP N N N N 322 TRP CA C N S 323 TRP C C N N 324 TRP O O N N 325 TRP CB C N N 326 TRP CG C Y N 327 TRP CD1 C Y N 328 TRP CD2 C Y N 329 TRP NE1 N Y N 330 TRP CE2 C Y N 331 TRP CE3 C Y N 332 TRP CZ2 C Y N 333 TRP CZ3 C Y N 334 TRP CH2 C Y N 335 TRP OXT O N N 336 TRP H H N N 337 TRP H2 H N N 338 TRP HA H N N 339 TRP HB2 H N N 340 TRP HB3 H N N 341 TRP HD1 H N N 342 TRP HE1 H N N 343 TRP HE3 H N N 344 TRP HZ2 H N N 345 TRP HZ3 H N N 346 TRP HH2 H N N 347 TRP HXT H N N 348 TYR N N N N 349 TYR CA C N S 350 TYR C C N N 351 TYR O O N N 352 TYR CB C N N 353 TYR CG C Y N 354 TYR CD1 C Y N 355 TYR CD2 C Y N 356 TYR CE1 C Y N 357 TYR CE2 C Y N 358 TYR CZ C Y N 359 TYR OH O N N 360 TYR OXT O N N 361 TYR H H N N 362 TYR H2 H N N 363 TYR HA H N N 364 TYR HB2 H N N 365 TYR HB3 H N N 366 TYR HD1 H N N 367 TYR HD2 H N N 368 TYR HE1 H N N 369 TYR HE2 H N N 370 TYR HH H N N 371 TYR HXT H N N 372 U OP3 O N N 373 U P P N N 374 U OP1 O N N 375 U OP2 O N N 376 U "O5'" O N N 377 U "C5'" C N N 378 U "C4'" C N R 379 U "O4'" O N N 380 U "C3'" C N S 381 U "O3'" O N N 382 U "C2'" C N R 383 U "O2'" O N N 384 U "C1'" C N R 385 U N1 N N N 386 U C2 C N N 387 U O2 O N N 388 U N3 N N N 389 U C4 C N N 390 U O4 O N N 391 U C5 C N N 392 U C6 C N N 393 U HOP3 H N N 394 U HOP2 H N N 395 U "H5'" H N N 396 U "H5''" H N N 397 U "H4'" H N N 398 U "H3'" H N N 399 U "HO3'" H N N 400 U "H2'" H N N 401 U "HO2'" H N N 402 U "H1'" H N N 403 U H3 H N N 404 U H5 H N N 405 U H6 H N N 406 VAL N N N N 407 VAL CA C N S 408 VAL C C N N 409 VAL O O N N 410 VAL CB C N N 411 VAL CG1 C N N 412 VAL CG2 C N N 413 VAL OXT O N N 414 VAL H H N N 415 VAL H2 H N N 416 VAL HA H N N 417 VAL HB H N N 418 VAL HG11 H N N 419 VAL HG12 H N N 420 VAL HG13 H N N 421 VAL HG21 H N N 422 VAL HG22 H N N 423 VAL HG23 H N N 424 VAL HXT H N N 425 ZN ZN ZN N N 426 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 U OP3 P sing N N 358 U OP3 HOP3 sing N N 359 U P OP1 doub N N 360 U P OP2 sing N N 361 U P "O5'" sing N N 362 U OP2 HOP2 sing N N 363 U "O5'" "C5'" sing N N 364 U "C5'" "C4'" sing N N 365 U "C5'" "H5'" sing N N 366 U "C5'" "H5''" sing N N 367 U "C4'" "O4'" sing N N 368 U "C4'" "C3'" sing N N 369 U "C4'" "H4'" sing N N 370 U "O4'" "C1'" sing N N 371 U "C3'" "O3'" sing N N 372 U "C3'" "C2'" sing N N 373 U "C3'" "H3'" sing N N 374 U "O3'" "HO3'" sing N N 375 U "C2'" "O2'" sing N N 376 U "C2'" "C1'" sing N N 377 U "C2'" "H2'" sing N N 378 U "O2'" "HO2'" sing N N 379 U "C1'" N1 sing N N 380 U "C1'" "H1'" sing N N 381 U N1 C2 sing N N 382 U N1 C6 sing N N 383 U C2 O2 doub N N 384 U C2 N3 sing N N 385 U N3 C4 sing N N 386 U N3 H3 sing N N 387 U C4 O4 doub N N 388 U C4 C5 sing N N 389 U C5 C6 doub N N 390 U C5 H5 sing N N 391 U C6 H6 sing N N 392 VAL N CA sing N N 393 VAL N H sing N N 394 VAL N H2 sing N N 395 VAL CA C sing N N 396 VAL CA CB sing N N 397 VAL CA HA sing N N 398 VAL C O doub N N 399 VAL C OXT sing N N 400 VAL CB CG1 sing N N 401 VAL CB CG2 sing N N 402 VAL CB HB sing N N 403 VAL CG1 HG11 sing N N 404 VAL CG1 HG12 sing N N 405 VAL CG1 HG13 sing N N 406 VAL CG2 HG21 sing N N 407 VAL CG2 HG22 sing N N 408 VAL CG2 HG23 sing N N 409 VAL OXT HXT sing N N 410 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 'MANGANESE (II) ION' MN 4 "URIDINE-5'-MONOPHOSPHATE" U 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2HBJ _pdbx_initial_refinement_model.details 'PDB ENTRY 2HBJ' #