HEADER HYDROLASE 14-JUN-06 2HBW TITLE CRYSTAL STRUCTURE OF A PUTATIVE ENDOPEPTIDASE (AVA_3396) FROM ANABAENA TITLE 2 VARIABILIS ATCC 29413 AT 1.05 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NLP/P60 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANABAENA VARIABILIS; SOURCE 3 ORGANISM_TAXID: 240292; SOURCE 4 STRAIN: ATCC 29413; SOURCE 5 GENE: YP_323898.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS NLP/P60 FAMILY PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 2HBW 1 REMARK SEQADV LINK REVDAT 6 18-OCT-17 2HBW 1 REMARK REVDAT 5 13-JUL-11 2HBW 1 VERSN REVDAT 4 23-MAR-11 2HBW 1 HEADER TITLE KEYWDS REVDAT 3 10-MAR-09 2HBW 1 JRNL REVDAT 2 24-FEB-09 2HBW 1 VERSN REVDAT 1 08-AUG-06 2HBW 0 JRNL AUTH Q.XU,S.SUDEK,D.MCMULLAN,M.D.MILLER,B.GEIERSTANGER,D.H.JONES, JRNL AUTH 2 S.S.KRISHNA,G.SPRAGGON,B.BURSALAY,P.ABDUBEK,C.ACOSTA, JRNL AUTH 3 E.AMBING,T.ASTAKHOVA,H.L.AXELROD,D.CARLTON,J.CARUTHERS, JRNL AUTH 4 H.J.CHIU,T.CLAYTON,M.C.DELLER,L.DUAN,Y.ELIAS,M.A.ELSLIGER, JRNL AUTH 5 J.FEUERHELM,S.K.GRZECHNIK,J.HALE,G.WON HAN,J.HAUGEN, JRNL AUTH 6 L.JAROSZEWSKI,K.K.JIN,H.E.KLOCK,M.W.KNUTH,P.KOZBIAL,A.KUMAR, JRNL AUTH 7 D.MARCIANO,A.T.MORSE,E.NIGOGHOSSIAN,L.OKACH,S.OOMMACHEN, JRNL AUTH 8 J.PAULSEN,R.REYES,C.L.RIFE,C.V.TROUT,H.VAN DEN BEDEM, JRNL AUTH 9 D.WEEKES,A.WHITE,G.WOLF,C.ZUBIETA,K.O.HODGSON,J.WOOLEY, JRNL AUTH10 A.M.DEACON,A.GODZIK,S.A.LESLEY,I.A.WILSON JRNL TITL STRUCTURAL BASIS OF MUREIN PEPTIDE SPECIFICITY OF A JRNL TITL 2 GAMMA-D-GLUTAMYL-L-DIAMINO ACID ENDOPEPTIDASE. JRNL REF STRUCTURE V. 17 303 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19217401 JRNL DOI 10.1016/J.STR.2008.12.008 REMARK 2 REMARK 2 RESOLUTION. 1.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 116513 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.126 REMARK 3 R VALUE (WORKING SET) : 0.125 REMARK 3 FREE R VALUE : 0.149 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5839 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 30 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5415 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 280 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1675 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 345 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : 0.24000 REMARK 3 B33 (A**2) : -0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.021 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.023 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.016 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.716 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2009 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1295 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2772 ; 1.936 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3197 ; 1.067 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 280 ; 6.084 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;32.506 ;25.114 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 313 ;10.770 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;12.773 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 298 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2451 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 415 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 460 ; 0.295 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1482 ; 0.203 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1023 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1100 ; 0.093 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 264 ; 0.229 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.362 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 35 ; 0.186 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 30 ; 0.190 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1304 ; 2.753 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 521 ; 2.188 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2087 ; 3.631 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 795 ; 5.273 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 685 ; 6.424 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3654 ; 2.291 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 363 ;12.929 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3240 ; 5.886 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. AN UNKNOWN LIGAND UNL IS LOCATED NEAR THE REMARK 3 CATALYTIC RESIDUE CYS 126. DUE TO THE POOR DENSITY, IT CAN NOT REMARK 3 BE UNAMBIGUOUSLY IDENTIFIED. IT RESEMBLES A SHORT PEPTIDE. THERE REMARK 3 ARE ADDITIONAL DISORDERED DENSITY AROUND CYS126. 3. BOTH 106 AND REMARK 3 116 SIDE CHAINS ARE DISORDERED ACCORDING TO DENSITY, HOWEVER, REMARK 3 ONLY THE MAIN CONFORMATION CAN BE BUILT UNAMBIGUOUSLY, AS A REMARK 3 RESULT, SIDE CHAINS OF THESE RESIDUES ARE MODELED WITH PARTIAL REMARK 3 OCCUPANCIES. 4. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.7 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 5. N-TERMINAL FROM 1 TO 14 ARE DISORDERED. 6. REMARK 3 THERE ARE SOME UNEXPLAINED DENSITIES IN THE SOLVENT AREA. REMARK 4 REMARK 4 2HBW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038174. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979008, 0.918370, 0.979291 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 116587 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.050 REMARK 200 RESOLUTION RANGE LOW (A) : 35.007 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.67900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.0% 1,4-BUTANEDIOL, 0.1M ACETATE, PH REMARK 280 4.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.24000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.44550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.24000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.44550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 LEU A 2 REMARK 465 SER A 3 REMARK 465 ASN A 4 REMARK 465 LEU A 5 REMARK 465 GLU A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 ILE A 9 REMARK 465 GLN A 10 REMARK 465 SER A 11 REMARK 465 PRO A 12 REMARK 465 LYS A 13 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 14 N CA CB OG REMARK 470 LYS A 77 NZ REMARK 470 LYS A 94 CE NZ REMARK 470 LYS A 95 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 206 NE2 GLN A 217 1.78 REMARK 500 OE1 GLN A 105 O HOH A 391 1.89 REMARK 500 O GLY A 71 O HOH A 420 1.93 REMARK 500 OD1 ASP A 158 O HOH A 377 2.05 REMARK 500 O HOH A 570 O HOH A 571 2.15 REMARK 500 O HOH A 336 O HOH A 452 2.18 REMARK 500 OE1 GLU A 149 O HOH A 271 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 206 O ARG A 233 4455 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 192 CD - CE - NZ ANGL. DEV. = 15.8 DEGREES REMARK 500 ARG A 220 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 220 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 119 -32.26 -136.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 235 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 236 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 237 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 360689 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE REMARK 999 TARGET SEQUENCE. DBREF 2HBW A 1 234 UNP Q3M7N3 Q3M7N3_ANAVT 1 234 SEQADV 2HBW GLY A 0 UNP Q3M7N3 EXPRESSION TAG SEQRES 1 A 235 GLY MSE LEU SER ASN LEU GLU SER SER ILE GLN SER PRO SEQRES 2 A 235 LYS SER GLY GLU TYR GLN CYS LEU ALA ALA LEU ASN LEU SEQRES 3 A 235 TYR ASP SER PRO GLU CYS THR SER LEU ALA THR GLN ALA SEQRES 4 A 235 ALA VAL GLY ARG HIS LEU GLN VAL THR SER ASN GLN GLN SEQRES 5 A 235 GLY ALA ALA VAL GLU VAL CYS LEU CYS GLU ASP ASP TYR SEQRES 6 A 235 PRO GLY TRP LEU SER LEU GLY ASP LEU GLY LEU LEU LYS SEQRES 7 A 235 PRO ALA THR VAL LEU TYR GLN ALA LYS SER PHE SER GLU SEQRES 8 A 235 SER GLU ILE LYS LYS LEU LEU PRO GLY ALA ILE ALA PHE SEQRES 9 A 235 THR GLN LYS ALA MSE GLN GLN SER ASN TYR TYR LEU TRP SEQRES 10 A 235 GLY GLY THR VAL GLY PRO ASN TYR ASP CYS SER GLY LEU SEQRES 11 A 235 MSE GLN ALA ALA PHE VAL SER VAL GLY ILE TRP LEU PRO SEQRES 12 A 235 ARG ASP ALA TYR GLN GLN GLU ALA PHE THR GLN ALA ILE SEQRES 13 A 235 THR ILE ASP GLU LEU ALA PRO GLY ASP LEU VAL PHE PHE SEQRES 14 A 235 GLY THR PRO VAL LYS ALA THR HIS VAL GLY LEU TYR LEU SEQRES 15 A 235 GLY ASP GLY CYS TYR ILE HIS SER SER GLY LYS ALA GLN SEQRES 16 A 235 GLY ARG ASP GLY ILE GLY ILE ASP ILE LEU SER GLU GLN SEQRES 17 A 235 GLY ASP VAL VAL SER ARG SER TYR TYR GLN GLN LEU ARG SEQRES 18 A 235 GLY ALA GLY ARG VAL VAL LYS SER TYR LYS PRO GLN ARG SEQRES 19 A 235 HIS MODRES 2HBW MSE A 108 MET SELENOMETHIONINE MODRES 2HBW MSE A 130 MET SELENOMETHIONINE HET MSE A 108 8 HET MSE A 130 8 HET ACT A 235 4 HET ACT A 236 4 HET UNL A 237 11 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION HETNAM UNL UNKNOWN LIGAND FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 ACT 2(C2 H3 O2 1-) FORMUL 5 HOH *345(H2 O) HELIX 1 1 GLY A 71 GLY A 74 5 4 HELIX 2 2 SER A 89 GLN A 109 1 21 HELIX 3 3 ASP A 125 SER A 136 1 12 HELIX 4 4 ASP A 144 THR A 152 1 9 HELIX 5 5 THR A 156 LEU A 160 5 5 HELIX 6 6 ASP A 209 GLN A 218 1 10 SHEET 1 A 5 TYR A 64 SER A 69 0 SHEET 2 A 5 ALA A 54 LEU A 59 -1 N VAL A 55 O LEU A 68 SHEET 3 A 5 HIS A 43 GLN A 51 -1 N GLN A 45 O CYS A 58 SHEET 4 A 5 GLY A 15 CYS A 19 -1 N TYR A 17 O LEU A 44 SHEET 5 A 5 LEU A 76 PRO A 78 -1 O LYS A 77 N GLN A 18 SHEET 1 B 2 LEU A 23 TYR A 26 0 SHEET 2 B 2 LEU A 34 ALA A 38 -1 O ALA A 35 N LEU A 25 SHEET 1 C 6 GLN A 153 ILE A 155 0 SHEET 2 C 6 LEU A 219 ARG A 224 -1 O ARG A 224 N GLN A 153 SHEET 3 C 6 LEU A 165 GLY A 169 -1 N PHE A 167 O ARG A 220 SHEET 4 C 6 ALA A 174 GLY A 182 -1 O GLY A 178 N VAL A 166 SHEET 5 C 6 CYS A 185 SER A 190 -1 O CYS A 185 N LEU A 181 SHEET 6 C 6 GLY A 198 ILE A 203 -1 O ASP A 202 N TYR A 186 LINK C ALA A 107 N MSE A 108 1555 1555 1.35 LINK C MSE A 108 N GLN A 109 1555 1555 1.33 LINK C LEU A 129 N MSE A 130 1555 1555 1.34 LINK C MSE A 130 N GLN A 131 1555 1555 1.32 CISPEP 1 GLY A 121 PRO A 122 0 7.63 SITE 1 AC1 9 GLU A 149 ALA A 150 THR A 152 ALA A 154 SITE 2 AC1 9 HOH A 252 HOH A 281 HOH A 316 HOH A 465 SITE 3 AC1 9 HOH A 490 SITE 1 AC2 6 TYR A 114 HIS A 176 SER A 190 GLY A 191 SITE 2 AC2 6 TYR A 215 HOH A 291 SITE 1 AC3 12 ALA A 35 TYR A 64 TRP A 116 ASP A 125 SITE 2 AC3 12 SER A 127 ASP A 144 ALA A 145 HOH A 258 SITE 3 AC3 12 HOH A 330 HOH A 402 HOH A 531 HOH A 538 CRYST1 76.480 86.891 37.288 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013070 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011510 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026820 0.00000