HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 15-JUN-06 2HC5 TITLE SOLUTION NMR STRUCTURE OF PROTEIN YVYC FROM BACILLUS SUBTILIS. TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SR482. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YVYC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ORF 99; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YVYC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS NESG, GFT-NMR, PSI, PROTEIN STRUCTURE INITIATIVE, NORTHEAST KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, ALPHA-BETA, FLAG, STRUCTURAL KEYWDS 3 GENOMICS, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.ELETSKY,G.LIU,H.S.ATREYA,D.K.SUKUMARAN,D.WANG,K.CUNNINGHAM, AUTHOR 2 H.JANJUA,L.-C.MA,R.XIAO,J.LIU,M.BARAN,T.B.ACTON,B.ROST, AUTHOR 3 G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 4 (NESG) REVDAT 6 08-MAY-24 2HC5 1 REMARK REVDAT 5 14-JUN-23 2HC5 1 REMARK REVDAT 4 26-FEB-20 2HC5 1 REMARK SEQADV REVDAT 3 27-OCT-09 2HC5 1 JRNL REVDAT 2 24-FEB-09 2HC5 1 VERSN REVDAT 1 15-AUG-06 2HC5 0 JRNL AUTH A.ELETSKY,D.K.SUKUMARAN,R.XIAO,T.B.ACTON,B.ROST, JRNL AUTH 2 G.T.MONTELIONE,T.SZYPERSKI JRNL TITL NMR STRUCTURE OF PROTEIN YVYC FROM BACILLUS SUBTILIS REVEALS JRNL TITL 2 UNEXPECTED STRUCTURAL SIMILARITY BETWEEN TWO PFAM FAMILIES. JRNL REF PROTEINS V. 76 1037 2009 JRNL REFN ISSN 0887-3585 JRNL PMID 19455708 JRNL DOI 10.1002/PROT.22459 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.1 REMARK 3 AUTHORS : VARIAN, INC. (VNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: EXPLICIT WATER BATH REFINEMENT REMARK 4 REMARK 4 2HC5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038183. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 MM REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.1 MM SR482 PROTEIN 10MM TRIS REMARK 210 BUFFER, 100MM NACL, 0.02% NAN3, REMARK 210 95% H2O / 5% D20 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 15N-, 13CALI-, 13CARO REMARK 210 -RESOLVED NOESY; (4,3)D GFT REMARK 210 CABCA(CO)NHN; (4,3)D GFT REMARK 210 HNNCABCA; (4,3)D GFT HABCAB(CO) REMARK 210 NHN; (4,3)D GFT HCCH-COSY (ALI); REMARK 210 (4,3)D GFT HCCH-COSY (ARO) REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY 1.3.13, CARA 1.5.3, PROSA REMARK 210 6.0, CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-20 REMARK 470 RES CSSEQI ATOMS REMARK 470 HIS A 117 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 106 H LYS A 108 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 22 70.13 -115.68 REMARK 500 1 PRO A 31 101.99 -55.90 REMARK 500 1 LEU A 66 -83.86 61.00 REMARK 500 1 GLU A 107 50.42 -60.44 REMARK 500 1 LYS A 108 -43.74 -150.10 REMARK 500 1 GLU A 111 44.50 27.79 REMARK 500 1 HIS A 116 81.19 -152.66 REMARK 500 2 ASN A 2 95.72 65.95 REMARK 500 2 HIS A 33 -168.03 173.68 REMARK 500 2 HIS A 57 70.02 59.94 REMARK 500 2 LEU A 66 -74.59 66.51 REMARK 500 2 GLU A 107 -75.04 63.56 REMARK 500 2 GLU A 111 -50.32 68.11 REMARK 500 3 ASN A 2 89.83 51.37 REMARK 500 3 THR A 8 139.49 -171.24 REMARK 500 3 ASN A 22 -67.97 -103.49 REMARK 500 3 LYS A 24 34.28 -86.65 REMARK 500 3 ASP A 25 -82.85 69.95 REMARK 500 3 ASP A 27 -87.77 -120.95 REMARK 500 3 ASN A 28 -75.62 -148.20 REMARK 500 3 PRO A 53 33.66 -82.84 REMARK 500 3 LYS A 65 -150.91 -140.52 REMARK 500 3 GLU A 107 -55.79 -20.76 REMARK 500 3 HIS A 114 -91.79 66.68 REMARK 500 3 HIS A 115 90.67 177.90 REMARK 500 4 ASN A 2 115.81 62.25 REMARK 500 4 PRO A 31 22.19 -74.47 REMARK 500 4 VAL A 32 -92.13 45.21 REMARK 500 4 HIS A 33 89.12 65.12 REMARK 500 4 GLN A 34 107.35 -58.93 REMARK 500 4 LEU A 66 -67.00 -177.21 REMARK 500 4 ASN A 79 33.17 70.09 REMARK 500 4 GLU A 107 -79.96 53.67 REMARK 500 4 GLU A 111 -6.53 62.07 REMARK 500 4 HIS A 112 49.61 -84.02 REMARK 500 4 HIS A 113 -102.00 61.00 REMARK 500 4 HIS A 114 -43.36 -137.81 REMARK 500 5 THR A 7 23.25 49.76 REMARK 500 5 ASN A 22 -76.39 -125.80 REMARK 500 5 ASN A 26 74.99 64.58 REMARK 500 5 ASP A 27 -24.28 71.82 REMARK 500 5 GLU A 29 70.73 57.17 REMARK 500 5 PRO A 31 100.91 -58.75 REMARK 500 5 HIS A 33 -68.95 76.55 REMARK 500 5 SER A 54 -168.54 -104.23 REMARK 500 5 HIS A 57 78.89 -105.44 REMARK 500 5 LYS A 65 -85.35 -118.71 REMARK 500 5 ARG A 83 135.39 -170.41 REMARK 500 5 GLU A 107 -85.49 50.46 REMARK 500 5 GLU A 111 -3.70 71.47 REMARK 500 REMARK 500 THIS ENTRY HAS 210 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7170 RELATED DB: BMRB REMARK 900 RELATED ID: SR482 RELATED DB: TARGETDB DBREF 2HC5 A 2 109 UNP P39737 YVYC_BACSU 2 109 SEQADV 2HC5 LEU A 1 UNP P39737 CLONING ARTIFACT SEQADV 2HC5 LEU A 110 UNP P39737 EXPRESSION TAG SEQADV 2HC5 GLU A 111 UNP P39737 EXPRESSION TAG SEQADV 2HC5 HIS A 112 UNP P39737 EXPRESSION TAG SEQADV 2HC5 HIS A 113 UNP P39737 EXPRESSION TAG SEQADV 2HC5 HIS A 114 UNP P39737 EXPRESSION TAG SEQADV 2HC5 HIS A 115 UNP P39737 EXPRESSION TAG SEQADV 2HC5 HIS A 116 UNP P39737 EXPRESSION TAG SEQADV 2HC5 HIS A 117 UNP P39737 EXPRESSION TAG SEQRES 1 A 117 LEU ASN ILE GLU ARG LEU THR THR LEU GLN PRO VAL TRP SEQRES 2 A 117 ASP ARG TYR ASP THR GLN ILE HIS ASN GLN LYS ASP ASN SEQRES 3 A 117 ASP ASN GLU VAL PRO VAL HIS GLN VAL SER TYR THR ASN SEQRES 4 A 117 LEU ALA GLU MET VAL GLY GLU MET ASN LYS LEU LEU GLU SEQRES 5 A 117 PRO SER GLN VAL HIS LEU LYS PHE GLU LEU HIS ASP LYS SEQRES 6 A 117 LEU ASN GLU TYR TYR VAL LYS VAL ILE GLU ASP SER THR SEQRES 7 A 117 ASN GLU VAL ILE ARG GLU ILE PRO PRO LYS ARG TRP LEU SEQRES 8 A 117 ASP PHE TYR ALA ALA MET THR GLU PHE LEU GLY LEU PHE SEQRES 9 A 117 VAL ASP GLU LYS LYS LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 LEU A 9 ASN A 22 1 14 HELIX 2 2 SER A 36 GLU A 52 1 17 HELIX 3 3 PRO A 86 VAL A 105 1 20 SHEET 1 A 3 LEU A 58 LYS A 65 0 SHEET 2 A 3 GLU A 68 GLU A 75 -1 O ILE A 74 N LYS A 59 SHEET 3 A 3 VAL A 81 ILE A 85 -1 O ARG A 83 N VAL A 73 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1