HEADER TRANSLATION 16-JUN-06 2HCJ TITLE TRYPSIN-MODIFIED ELONGATION FACTOR TU IN COMPLEX WITH TETRACYCLINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN CHAIN ELONGATION FACTOR EF-TU; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EF-TU FRAGMENT, RESIDUES 8-44; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PROTEIN CHAIN ELONGATION FACTOR EF-TU; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: EF-TU FRAGMENT, RESIDUES 59-393 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: TUFA; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 7 ORGANISM_TAXID: 562; SOURCE 8 STRAIN: TUFA KEYWDS TRYPSIN-MODIFIED EF-TU, GTPASE CENTER, COMPLEX WITH TETRACYCLINE, KEYWDS 2 TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR S.MUI,S.E.HEFFRON,A.AORORA,K.ABEL,E.BERGMANN,F.JURNAK REVDAT 4 03-APR-24 2HCJ 1 REMARK SEQADV HETSYN LINK REVDAT 3 05-SEP-18 2HCJ 1 TITLE REVDAT 2 24-FEB-09 2HCJ 1 VERSN REVDAT 1 31-OCT-06 2HCJ 0 JRNL AUTH S.E.HEFFRON,S.MUI,A.AORORA,K.ABEL,E.BERGMANN,F.JURNAK JRNL TITL MOLECULAR COMPLEMENTARITY BETWEEN TETRACYCLINE AND THE JRNL TITL 2 GTPASE ACTIVE SITE OF ELONGATION FACTOR TU. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 62 1392 2006 JRNL REFN ISSN 0907-4449 JRNL PMID 17057344 JRNL DOI 10.1107/S0907444906035426 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2361145.500 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 20748 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1007 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.12 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.22 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1638 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 84 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.038 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2834 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.87000 REMARK 3 B22 (A**2) : 0.87000 REMARK 3 B33 (A**2) : -1.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.23 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.27 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.950 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.000 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.100 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.880 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.240 ; 6.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : CNS BULK SOLVENT MODEL USED REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 52.23 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : MYTOPPAR:GDP_CNS4.PARAM REMARK 3 PARAMETER FILE 5 : MYTOPPAR:TAC_CNS10.PARAM REMARK 3 PARAMETER FILE 6 : MYTOPPAR:CSO_CEA_CNS.PARAM REMARK 3 PARAMETER FILE 7 : MYTOPPAR:OTHER_SOLVENT.PARAM REMARK 3 PARAMETER FILE 8 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : MYTOPPAR:GDP_CNS4.TOP REMARK 3 TOPOLOGY FILE 5 : MYTOPPAR:TAC_CNS6.TOP REMARK 3 TOPOLOGY FILE 6 : MYTOPPAR:CSO_OXY-CYS_CNS.TOP REMARK 3 TOPOLOGY FILE 7 : MYTOPPAR:OTHER_SOLVENT.TOP REMARK 3 TOPOLOGY FILE 8 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: A GLYOXYLIC ACID MOLECULE (GLV) WAS REMARK 3 MODELED INTO DENSITY NEAR ARG269, BUT THE ACTUAL IDENTITY OF REMARK 3 THIS SOLVENT MOLECULE, PRESUMED TO BE A CONTAMINANT, IS REMARK 3 UNCERTAIN. REMARK 4 REMARK 4 2HCJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038196. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-99 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20773 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.120 REMARK 200 RESOLUTION RANGE LOW (A) : 51.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 57.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41600 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: CHAIN A, RESIDUES 8-39, 59-260, 264-393 OF TM-EF REMARK 200 -TU-MGGDP IN SPACE GROUP C2221, 1.9A MODEL (UNPUBLISHED) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.66500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.55500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.55500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 117.99750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.55500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.55500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.33250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.55500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.55500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 117.99750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.55500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.55500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.33250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 78.66500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A1005 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2005 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 41 REMARK 465 ALA A 42 REMARK 465 ALA A 43 REMARK 465 ARG A 44 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 95 2.88 -66.46 REMARK 500 ALA B 96 104.43 -171.51 REMARK 500 ASP B 142 91.83 -168.98 REMARK 500 GLU B 215 -69.20 -101.83 REMARK 500 SER B 221 100.23 -32.91 REMARK 500 ILE B 247 -40.15 62.74 REMARK 500 ARG B 262 -26.20 73.83 REMARK 500 ARG B 333 -65.92 59.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 998 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 25 OG1 REMARK 620 2 GDP A 999 O2B 87.6 REMARK 620 3 HOH A2001 O 170.0 98.2 REMARK 620 4 TAC B 888 O11 80.7 166.3 92.4 REMARK 620 5 TAC B 888 O12 81.0 92.3 90.6 78.8 REMARK 620 6 HOH B2002 O 84.7 100.5 102.1 85.8 160.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 108 O REMARK 620 2 ASP B 109 OD1 92.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 998 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAC B 888 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLV B 1004 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HDN RELATED DB: PDB DBREF 2HCJ A 8 44 UNP P0A6N1 EFTU_ECOLI 8 44 DBREF 2HCJ B 59 393 UNP P0A6N1 EFTU_ECOLI 59 393 SEQADV 2HCJ CSO B 81 UNP P0A6N1 CYS 81 MODIFIED RESIDUE SEQADV 2HCJ GLY B 393 UNP P0A6N1 SER 393 VARIANT SEQRES 1 A 37 THR LYS PRO HIS VAL ASN VAL GLY THR ILE GLY HIS VAL SEQRES 2 A 37 ASP HIS GLY LYS THR THR LEU THR ALA ALA ILE THR THR SEQRES 3 A 37 VAL LEU ALA LYS THR TYR GLY GLY ALA ALA ARG SEQRES 1 B 335 GLY ILE THR ILE ASN THR SER HIS VAL GLU TYR ASP THR SEQRES 2 B 335 PRO THR ARG HIS TYR ALA HIS VAL ASP CSO PRO GLY HIS SEQRES 3 B 335 ALA ASP TYR VAL LYS ASN MET ILE THR GLY ALA ALA GLN SEQRES 4 B 335 MET ASP GLY ALA ILE LEU VAL VAL ALA ALA THR ASP GLY SEQRES 5 B 335 PRO MET PRO GLN THR ARG GLU HIS ILE LEU LEU GLY ARG SEQRES 6 B 335 GLN VAL GLY VAL PRO TYR ILE ILE VAL PHE LEU ASN LYS SEQRES 7 B 335 CYS ASP MET VAL ASP ASP GLU GLU LEU LEU GLU LEU VAL SEQRES 8 B 335 GLU MET GLU VAL ARG GLU LEU LEU SER GLN TYR ASP PHE SEQRES 9 B 335 PRO GLY ASP ASP THR PRO ILE VAL ARG GLY SER ALA LEU SEQRES 10 B 335 LYS ALA LEU GLU GLY ASP ALA GLU TRP GLU ALA LYS ILE SEQRES 11 B 335 LEU GLU LEU ALA GLY PHE LEU ASP SER TYR ILE PRO GLU SEQRES 12 B 335 PRO GLU ARG ALA ILE ASP LYS PRO PHE LEU LEU PRO ILE SEQRES 13 B 335 GLU ASP VAL PHE SER ILE SER GLY ARG GLY THR VAL VAL SEQRES 14 B 335 THR GLY ARG VAL GLU ARG GLY ILE ILE LYS VAL GLY GLU SEQRES 15 B 335 GLU VAL GLU ILE VAL GLY ILE LYS GLU THR GLN LYS SER SEQRES 16 B 335 THR CYS THR GLY VAL GLU MET PHE ARG LYS LEU LEU ASP SEQRES 17 B 335 GLU GLY ARG ALA GLY GLU ASN VAL GLY VAL LEU LEU ARG SEQRES 18 B 335 GLY ILE LYS ARG GLU GLU ILE GLU ARG GLY GLN VAL LEU SEQRES 19 B 335 ALA LYS PRO GLY THR ILE LYS PRO HIS THR LYS PHE GLU SEQRES 20 B 335 SER GLU VAL TYR ILE LEU SER LYS ASP GLU GLY GLY ARG SEQRES 21 B 335 HIS THR PRO PHE PHE LYS GLY TYR ARG PRO GLN PHE TYR SEQRES 22 B 335 PHE ARG THR THR ASP VAL THR GLY THR ILE GLU LEU PRO SEQRES 23 B 335 GLU GLY VAL GLU MET VAL MET PRO GLY ASP ASN ILE LYS SEQRES 24 B 335 MET VAL VAL THR LEU ILE HIS PRO ILE ALA MET ASP ASP SEQRES 25 B 335 GLY LEU ARG PHE ALA ILE ARG GLU GLY GLY ARG THR VAL SEQRES 26 B 335 GLY ALA GLY VAL VAL ALA LYS VAL LEU GLY MODRES 2HCJ CSO B 81 CYS S-HYDROXYCYSTEINE HET CSO B 81 7 HET MG A 998 1 HET SO4 A1005 5 HET GDP A 999 28 HET NA B1001 1 HET NA B1002 1 HET NA B1003 1 HET TAC B 888 32 HET GLV B1004 5 HETNAM CSO S-HYDROXYCYSTEINE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM NA SODIUM ION HETNAM TAC TETRACYCLINE HETNAM GLV GLYOXYLIC ACID HETSYN GLV GLYOXALATE; GLYOXYLATE FORMUL 2 CSO C3 H7 N O3 S FORMUL 3 MG MG 2+ FORMUL 4 SO4 O4 S 2- FORMUL 5 GDP C10 H15 N5 O11 P2 FORMUL 6 NA 3(NA 1+) FORMUL 9 TAC C22 H24 N2 O8 FORMUL 10 GLV C2 H2 O3 FORMUL 11 HOH *160(H2 O) HELIX 1 1 GLY A 23 GLY A 40 1 18 HELIX 2 2 GLY B 83 GLY B 94 1 12 HELIX 3 3 MET B 112 VAL B 125 1 14 HELIX 4 4 ASP B 142 TYR B 160 1 19 HELIX 5 5 PRO B 163 THR B 167 5 5 HELIX 6 6 SER B 173 GLU B 179 1 7 HELIX 7 7 ASP B 181 ILE B 199 1 19 HELIX 8 8 ARG B 204 LYS B 208 5 5 HELIX 9 9 LYS B 282 ILE B 286 5 5 HELIX 10 10 SER B 312 GLY B 316 5 5 SHEET 1 A 6 SER B 65 ASP B 70 0 SHEET 2 A 6 HIS B 75 ASP B 80 -1 O TYR B 76 N TYR B 69 SHEET 3 A 6 HIS A 11 ILE A 17 1 N VAL A 14 O ALA B 77 SHEET 4 A 6 GLY B 100 ALA B 106 1 O ILE B 102 N GLY A 15 SHEET 5 A 6 ILE B 130 ASN B 135 1 O ILE B 131 N LEU B 103 SHEET 6 A 6 ILE B 169 ARG B 171 1 O VAL B 170 N LEU B 134 SHEET 1 B 7 LEU B 211 PRO B 213 0 SHEET 2 B 7 VAL B 291 ALA B 293 -1 O LEU B 292 N LEU B 212 SHEET 3 B 7 GLU B 241 VAL B 245 -1 N GLU B 243 O ALA B 293 SHEET 4 B 7 GLN B 251 MET B 260 -1 O SER B 253 N VAL B 242 SHEET 5 B 7 ASN B 273 LEU B 278 -1 O LEU B 277 N GLY B 257 SHEET 6 B 7 GLY B 224 ARG B 230 -1 N THR B 225 O LEU B 278 SHEET 7 B 7 VAL B 217 ILE B 220 -1 N PHE B 218 O VAL B 226 SHEET 1 C 5 LEU B 211 PRO B 213 0 SHEET 2 C 5 VAL B 291 ALA B 293 -1 O LEU B 292 N LEU B 212 SHEET 3 C 5 GLU B 241 VAL B 245 -1 N GLU B 243 O ALA B 293 SHEET 4 C 5 GLN B 251 MET B 260 -1 O SER B 253 N VAL B 242 SHEET 5 C 5 LYS B 263 LEU B 265 -1 O LEU B 265 N VAL B 258 SHEET 1 D 2 ILE B 235 LYS B 237 0 SHEET 2 D 2 GLU B 267 ARG B 269 -1 O GLY B 268 N ILE B 236 SHEET 1 E 7 PRO B 300 ILE B 310 0 SHEET 2 E 7 ASN B 355 ALA B 367 -1 O MET B 358 N SER B 306 SHEET 3 E 7 THR B 335 GLU B 342 -1 N THR B 340 O THR B 361 SHEET 4 E 7 GLN B 329 PHE B 332 -1 N PHE B 330 O VAL B 337 SHEET 5 E 7 ARG B 373 GLU B 378 -1 O ALA B 375 N TYR B 331 SHEET 6 E 7 ARG B 381 VAL B 391 -1 O GLY B 384 N ILE B 376 SHEET 7 E 7 PRO B 300 ILE B 310 -1 N TYR B 309 O ALA B 385 SHEET 1 F 2 PHE B 322 PHE B 323 0 SHEET 2 F 2 MET B 349 VAL B 350 -1 O VAL B 350 N PHE B 322 LINK C ASP B 80 N CSO B 81 1555 1555 1.34 LINK C CSO B 81 N PRO B 82 1555 1555 1.35 LINK OG1 THR A 25 MG MG A 998 1555 1555 2.21 LINK MG MG A 998 O2B GDP A 999 1555 1555 2.06 LINK MG MG A 998 O HOH A2001 1555 1555 1.99 LINK MG MG A 998 O11 TAC B 888 1555 1555 2.09 LINK MG MG A 998 O12 TAC B 888 1555 1555 1.93 LINK MG MG A 998 O HOH B2002 1555 1555 2.03 LINK O THR B 108 NA NA B1001 1555 1555 2.89 LINK OD1 ASP B 109 NA NA B1001 1555 1555 2.45 LINK OD2 ASP B 196 NA NA B1003 1555 1555 2.55 LINK OE2 GLU B 348 NA NA B1002 1555 1555 2.49 SITE 1 AC1 5 THR A 25 GDP A 999 HOH A2001 TAC B 888 SITE 2 AC1 5 HOH B2002 SITE 1 AC2 4 THR B 108 ASP B 109 PHE B 323 HOH B2030 SITE 1 AC3 4 MET B 139 VAL B 140 ASP B 141 GLU B 348 SITE 1 AC4 1 ASP B 196 SITE 1 AC5 3 HOH A2105 TAC B 888 HOH B2006 SITE 1 AC6 17 THR A 25 MG A 998 GDP A 999 SO4 A1005 SITE 2 AC6 17 HOH A2001 THR B 64 SER B 65 ASP B 80 SITE 3 AC6 17 CSO B 81 PRO B 82 HOH B2002 HOH B2003 SITE 4 AC6 17 HOH B2004 HOH B2005 HOH B2006 HOH B2007 SITE 5 AC6 17 HOH B2146 SITE 1 AC7 20 ASP A 21 HIS A 22 GLY A 23 LYS A 24 SITE 2 AC7 20 THR A 25 THR A 26 MG A 998 HOH A2001 SITE 3 AC7 20 HOH A2059 HOH A2106 ASN B 135 LYS B 136 SITE 4 AC7 20 ASP B 138 MET B 139 SER B 173 ALA B 174 SITE 5 AC7 20 LEU B 175 TAC B 888 HOH B2003 HOH B2028 SITE 1 AC8 4 PHE B 261 ARG B 262 ARG B 269 GLU B 272 CRYST1 69.110 69.110 157.330 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014470 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014470 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006356 0.00000