HEADER TRANSFERASE 18-JUN-06 2HCS TITLE CRYSTAL STRUCTURE OF RNA DEPENDANT RNA POLYMERASE DOMAIN OF WEST NILE TITLE 2 VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE (NS5); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA-DIRECTED RNA POLYMERASE DOMAIN; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KUNJIN VIRUS; SOURCE 3 ORGANISM_TAXID: 11077; SOURCE 4 STRAIN: KUNJIN; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C41PROS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST14 KEYWDS WEST-NILE VIRUS RNA POLYMERASE, STRUCTURAL GENOMICS, MARSEILLES KEYWDS 2 STRUCTURAL GENOMICS PROGRAM @ AFMB, MSGP, VIZIER, VIRAL ENZYMES KEYWDS 3 INVOLVED IN REPLICATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.P.EGLOFF,H.MALET,MARSEILLES STRUCTURAL GENOMICS PROGRAM @ AFMB AUTHOR 2 (MSGP) REVDAT 5 14-FEB-24 2HCS 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2HCS 1 VERSN REVDAT 3 24-FEB-09 2HCS 1 VERSN REVDAT 2 28-AUG-07 2HCS 1 JRNL KEYWDS REVDAT 1 06-FEB-07 2HCS 0 JRNL AUTH H.MALET,M.P.EGLOFF,B.SELISKO,R.E.BUTCHER,P.J.WRIGHT, JRNL AUTH 2 M.ROBERTS,A.GRUEZ,G.SULZENBACHER,C.VONRHEIN,G.BRICOGNE, JRNL AUTH 3 J.M.MACKENZIE,A.A.KHROMYKH,A.D.DAVIDSON,B.CANARD JRNL TITL CRYSTAL STRUCTURE OF THE RNA POLYMERASE DOMAIN OF THE WEST JRNL TITL 2 NILE VIRUS NON-STRUCTURAL PROTEIN 5 JRNL REF J.BIOL.CHEM. V. 282 10678 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17287213 JRNL DOI 10.1074/JBC.M607273200 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 27231 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1453 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1986 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.4050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3936 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 106 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 66.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.49000 REMARK 3 B22 (A**2) : -1.49000 REMARK 3 B33 (A**2) : 2.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.317 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.239 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.182 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.343 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4026 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5449 ; 1.723 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 481 ; 6.628 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 199 ;33.845 ;23.015 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 697 ;21.440 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;21.008 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 579 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3067 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1859 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2692 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 184 ; 0.172 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.174 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.223 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.204 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2473 ; 0.793 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3871 ; 1.370 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1834 ; 1.887 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1578 ; 2.882 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 322 A 724 REMARK 3 ORIGIN FOR THE GROUP (A): 75.1765 80.2719 1.2427 REMARK 3 T TENSOR REMARK 3 T11: -0.1889 T22: -0.1165 REMARK 3 T33: -0.1395 T12: -0.0067 REMARK 3 T13: 0.0115 T23: -0.0708 REMARK 3 L TENSOR REMARK 3 L11: 3.0474 L22: 2.8103 REMARK 3 L33: 1.1853 L12: -0.8227 REMARK 3 L13: 0.2046 L23: -0.1936 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: 0.3020 S13: 0.2942 REMARK 3 S21: -0.2166 S22: -0.0096 S23: -0.2048 REMARK 3 S31: -0.0417 S32: -0.0088 S33: 0.0213 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 725 A 891 REMARK 3 ORIGIN FOR THE GROUP (A): 100.5944 64.0324 -2.3466 REMARK 3 T TENSOR REMARK 3 T11: -0.2633 T22: -0.1307 REMARK 3 T33: -0.0479 T12: -0.0195 REMARK 3 T13: -0.0074 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 6.7383 L22: 2.3399 REMARK 3 L33: 6.4562 L12: 0.2315 REMARK 3 L13: -3.8013 L23: 1.0480 REMARK 3 S TENSOR REMARK 3 S11: -0.3679 S12: 0.2327 S13: -0.2108 REMARK 3 S21: 0.0547 S22: 0.1129 S23: -0.0331 REMARK 3 S31: 0.1438 S32: -0.0882 S33: 0.2550 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HCS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038203. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9340 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, XPREP REMARK 200 DATA SCALING SOFTWARE : MOSFLM REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28709 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.56700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: XPREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG 10000, 0.2 M IMIDAZOLE MALATE, REMARK 280 PH 8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.54850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.82275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.27425 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 311 REMARK 465 HIS A 312 REMARK 465 HIS A 313 REMARK 465 HIS A 314 REMARK 465 HIS A 315 REMARK 465 HIS A 316 REMARK 465 LYS A 317 REMARK 465 SER A 318 REMARK 465 ALA A 319 REMARK 465 SER A 320 REMARK 465 SER A 321 REMARK 465 THR A 338 REMARK 465 ASN A 339 REMARK 465 VAL A 340 REMARK 465 THR A 341 REMARK 465 THR A 342 REMARK 465 MET A 343 REMARK 465 ALA A 344 REMARK 465 MET A 345 REMARK 465 THR A 346 REMARK 465 ASP A 347 REMARK 465 THR A 348 REMARK 465 THR A 349 REMARK 465 PRO A 350 REMARK 465 PHE A 351 REMARK 465 GLY A 352 REMARK 465 GLN A 353 REMARK 465 GLN A 354 REMARK 465 ARG A 355 REMARK 465 VAL A 356 REMARK 465 PHE A 357 REMARK 465 LYS A 358 REMARK 465 GLU A 359 REMARK 465 LYS A 360 REMARK 465 VAL A 361 REMARK 465 LEU A 411 REMARK 465 GLY A 412 REMARK 465 ALA A 413 REMARK 465 MET A 414 REMARK 465 PHE A 415 REMARK 465 GLU A 416 REMARK 465 GLU A 417 REMARK 465 GLN A 418 REMARK 465 ASN A 419 REMARK 465 ILE A 453 REMARK 465 TYR A 454 REMARK 465 ASN A 455 REMARK 465 MET A 456 REMARK 465 MET A 457 REMARK 465 GLY A 458 REMARK 465 LYS A 459 REMARK 465 ARG A 460 REMARK 465 GLU A 461 REMARK 465 LYS A 462 REMARK 465 LYS A 463 REMARK 465 PRO A 464 REMARK 465 GLY A 465 REMARK 465 GLU A 466 REMARK 465 PHE A 467 REMARK 465 GLY A 468 REMARK 465 LYS A 469 REMARK 465 ALA A 470 REMARK 465 LYS A 471 REMARK 465 GLY A 472 REMARK 465 HIS A 577 REMARK 465 LYS A 578 REMARK 465 VAL A 579 REMARK 465 VAL A 580 REMARK 465 LYS A 581 REMARK 465 VAL A 582 REMARK 465 MET A 583 REMARK 465 ARG A 584 REMARK 465 PRO A 585 REMARK 465 ALA A 586 REMARK 465 ALA A 587 REMARK 465 ASP A 588 REMARK 465 GLY A 589 REMARK 465 ARG A 590 REMARK 465 THR A 591 REMARK 465 VAL A 592 REMARK 465 MET A 593 REMARK 465 ASP A 594 REMARK 465 VAL A 595 REMARK 465 ILE A 596 REMARK 465 SER A 597 REMARK 465 ARG A 598 REMARK 465 GLU A 599 REMARK 465 ASP A 600 REMARK 465 GLN A 601 REMARK 465 ARG A 602 REMARK 465 GLY A 748 REMARK 465 ALA A 749 REMARK 465 GLY A 750 REMARK 465 TRP A 751 REMARK 465 LYS A 892 REMARK 465 ARG A 893 REMARK 465 TYR A 894 REMARK 465 GLU A 895 REMARK 465 ASP A 896 REMARK 465 THR A 897 REMARK 465 THR A 898 REMARK 465 LEU A 899 REMARK 465 VAL A 900 REMARK 465 GLU A 901 REMARK 465 ASP A 902 REMARK 465 THR A 903 REMARK 465 VAL A 904 REMARK 465 LEU A 905 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 376 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 325 C GLY A 325 O 0.182 REMARK 500 GLY A 325 C VAL A 326 N 0.203 REMARK 500 LEU A 329 C LEU A 330 N 0.144 REMARK 500 LYS A 332 CG LYS A 332 CD 0.265 REMARK 500 LYS A 332 CD LYS A 332 CE 0.304 REMARK 500 LYS A 332 CE LYS A 332 NZ 0.464 REMARK 500 LYS A 724 CD LYS A 724 CE 0.312 REMARK 500 LYS A 724 CE LYS A 724 NZ 0.385 REMARK 500 ARG A 859 CG ARG A 859 CD 0.236 REMARK 500 ARG A 859 CZ ARG A 859 NH1 0.133 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 332 CB - CG - CD ANGL. DEV. = -17.5 DEGREES REMARK 500 ARG A 389 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 MET A 436 CG - SD - CE ANGL. DEV. = -12.7 DEGREES REMARK 500 ARG A 502 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 502 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 659 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 LYS A 724 CD - CE - NZ ANGL. DEV. = -24.9 DEGREES REMARK 500 ARG A 744 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 859 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 331 55.94 -117.57 REMARK 500 ASP A 335 -77.66 -62.21 REMARK 500 THR A 336 1.77 -54.56 REMARK 500 LYS A 364 -157.57 -134.37 REMARK 500 ALA A 365 74.50 44.11 REMARK 500 ARG A 389 -70.21 -10.51 REMARK 500 SER A 407 -126.96 -92.86 REMARK 500 HIS A 450 -40.94 -146.04 REMARK 500 ARG A 474 -72.88 -57.11 REMARK 500 ALA A 534 60.21 -155.56 REMARK 500 GLN A 606 -26.79 -27.04 REMARK 500 VAL A 607 -81.36 -38.80 REMARK 500 LYS A 642 99.68 -18.10 REMARK 500 GLU A 698 -36.82 -37.05 REMARK 500 SER A 801 73.06 80.01 REMARK 500 ILE A 802 90.95 -63.33 REMARK 500 HIS A 803 -113.01 -107.78 REMARK 500 ILE A 823 -72.08 -125.13 REMARK 500 SER A 889 36.45 -86.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 440 OE1 REMARK 620 2 HIS A 444 NE2 97.5 REMARK 620 3 CYS A 449 SG 98.3 115.6 REMARK 620 4 CYS A 452 SG 124.3 124.7 94.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 717 NE2 REMARK 620 2 CYS A 733 SG 125.3 REMARK 620 3 CYS A 852 SG 97.8 127.0 REMARK 620 4 HOH A 996 O 83.4 118.0 93.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HCN RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH CALCIUM DBREF 2HCS A 318 905 UNP P14335 POLG_KUNJM 2846 3433 SEQADV 2HCS HIS A 311 UNP P14335 EXPRESSION TAG SEQADV 2HCS HIS A 312 UNP P14335 EXPRESSION TAG SEQADV 2HCS HIS A 313 UNP P14335 EXPRESSION TAG SEQADV 2HCS HIS A 314 UNP P14335 EXPRESSION TAG SEQADV 2HCS HIS A 315 UNP P14335 EXPRESSION TAG SEQADV 2HCS HIS A 316 UNP P14335 EXPRESSION TAG SEQADV 2HCS LYS A 317 UNP P14335 SEE REMARK 999 SEQRES 1 A 595 HIS HIS HIS HIS HIS HIS LYS SER ALA SER SER LEU VAL SEQRES 2 A 595 ASN GLY VAL VAL ARG LEU LEU SER LYS PRO TRP ASP THR SEQRES 3 A 595 ILE THR ASN VAL THR THR MET ALA MET THR ASP THR THR SEQRES 4 A 595 PRO PHE GLY GLN GLN ARG VAL PHE LYS GLU LYS VAL ASP SEQRES 5 A 595 THR LYS ALA PRO GLU PRO PRO GLU GLY VAL LYS TYR VAL SEQRES 6 A 595 LEU ASN GLU THR THR ASN TRP LEU TRP ALA PHE LEU ALA SEQRES 7 A 595 ARG GLU LYS ARG PRO ARG MET CYS SER ARG GLU GLU PHE SEQRES 8 A 595 ILE ARG LYS VAL ASN SER ASN ALA ALA LEU GLY ALA MET SEQRES 9 A 595 PHE GLU GLU GLN ASN GLN TRP ARG SER ALA ARG GLU ALA SEQRES 10 A 595 VAL GLU ASP PRO LYS PHE TRP GLU MET VAL ASP GLU GLU SEQRES 11 A 595 ARG GLU ALA HIS LEU ARG GLY GLU CYS HIS THR CYS ILE SEQRES 12 A 595 TYR ASN MET MET GLY LYS ARG GLU LYS LYS PRO GLY GLU SEQRES 13 A 595 PHE GLY LYS ALA LYS GLY SER ARG ALA ILE TRP PHE MET SEQRES 14 A 595 TRP LEU GLY ALA ARG PHE LEU GLU PHE GLU ALA LEU GLY SEQRES 15 A 595 PHE LEU ASN GLU ASP HIS TRP LEU GLY ARG LYS ASN SER SEQRES 16 A 595 GLY GLY GLY VAL GLU GLY LEU GLY LEU GLN LYS LEU GLY SEQRES 17 A 595 TYR ILE LEU ARG GLU VAL GLY THR ARG PRO GLY GLY ARG SEQRES 18 A 595 ILE TYR ALA ASP ASP THR ALA GLY TRP ASP THR ARG ILE SEQRES 19 A 595 THR ARG ALA ASP LEU GLU ASN GLU ALA LYS VAL LEU GLU SEQRES 20 A 595 LEU LEU ASP GLY GLU HIS ARG ARG LEU ALA ARG ALA ILE SEQRES 21 A 595 ILE GLU LEU THR TYR ARG HIS LYS VAL VAL LYS VAL MET SEQRES 22 A 595 ARG PRO ALA ALA ASP GLY ARG THR VAL MET ASP VAL ILE SEQRES 23 A 595 SER ARG GLU ASP GLN ARG GLY SER GLY GLN VAL VAL THR SEQRES 24 A 595 TYR ALA LEU ASN THR PHE THR ASN LEU ALA VAL GLN LEU SEQRES 25 A 595 VAL ARG MET MET GLU GLY GLU GLY VAL ILE GLY PRO ASP SEQRES 26 A 595 ASP VAL GLU LYS LEU THR LYS GLY LYS GLY PRO LYS VAL SEQRES 27 A 595 ARG THR TRP LEU SER GLU ASN GLY GLU GLU ARG LEU SER SEQRES 28 A 595 ARG MET ALA VAL SER GLY ASP ASP CYS VAL VAL LYS PRO SEQRES 29 A 595 LEU ASP ASP ARG PHE ALA THR SER LEU HIS PHE LEU ASN SEQRES 30 A 595 ALA MET SER LYS VAL ARG LYS ASP ILE GLN GLU TRP LYS SEQRES 31 A 595 PRO SER THR GLY TRP TYR ASP TRP GLN GLN VAL PRO PHE SEQRES 32 A 595 CYS SER ASN HIS PHE THR GLU LEU ILE MET LYS ASP GLY SEQRES 33 A 595 ARG THR LEU VAL THR PRO CYS ARG GLY GLN ASP GLU LEU SEQRES 34 A 595 VAL GLY ARG ALA ARG ILE SER PRO GLY ALA GLY TRP ASN SEQRES 35 A 595 VAL ARG ASP THR ALA CYS LEU ALA LYS SER TYR ALA GLN SEQRES 36 A 595 MET TRP LEU LEU LEU TYR PHE HIS ARG ARG ASP LEU ARG SEQRES 37 A 595 LEU MET ALA ASN ALA ILE CYS SER ALA VAL PRO VAL ASN SEQRES 38 A 595 TRP VAL PRO THR GLY ARG THR THR TRP SER ILE HIS ALA SEQRES 39 A 595 GLY GLY GLU TRP MET THR THR GLU ASP MET LEU GLU VAL SEQRES 40 A 595 TRP ASN ARG VAL TRP ILE GLU GLU ASN GLU TRP MET GLU SEQRES 41 A 595 ASP LYS THR PRO VAL GLU LYS TRP SER ASP VAL PRO TYR SEQRES 42 A 595 SER GLY LYS ARG GLU ASP ILE TRP CYS GLY SER LEU ILE SEQRES 43 A 595 GLY THR ARG ALA ARG ALA THR TRP ALA GLU ASN ILE GLN SEQRES 44 A 595 VAL ALA ILE ASN GLN VAL ARG SER ILE ILE GLY ASP GLU SEQRES 45 A 595 LYS TYR VAL ASP TYR MET SER SER LEU LYS ARG TYR GLU SEQRES 46 A 595 ASP THR THR LEU VAL GLU ASP THR VAL LEU HET ZN A 1 1 HET ZN A 2 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 HOH *106(H2 O) HELIX 1 1 ASN A 324 SER A 331 1 8 HELIX 2 2 LYS A 332 ASP A 335 5 4 HELIX 3 3 PRO A 369 ARG A 389 1 21 HELIX 4 4 SER A 397 SER A 407 1 11 HELIX 5 5 GLN A 420 GLU A 429 1 10 HELIX 6 6 LYS A 432 GLY A 447 1 16 HELIX 7 7 ARG A 474 GLY A 492 1 19 HELIX 8 8 GLY A 492 ASP A 497 1 6 HELIX 9 9 GLY A 501 GLY A 506 1 6 HELIX 10 10 GLY A 513 GLY A 525 1 13 HELIX 11 11 GLY A 539 ILE A 544 5 6 HELIX 12 12 THR A 545 LYS A 554 1 10 HELIX 13 13 VAL A 555 LEU A 559 5 5 HELIX 14 14 ASP A 560 TYR A 575 1 16 HELIX 15 15 GLY A 605 GLU A 629 1 25 HELIX 16 16 GLY A 633 VAL A 637 5 5 HELIX 17 17 GLY A 643 SER A 661 1 19 HELIX 18 18 ASP A 676 SER A 682 5 7 HELIX 19 19 LEU A 683 MET A 689 1 7 HELIX 20 20 ASP A 707 VAL A 711 5 5 HELIX 21 21 GLY A 735 ILE A 745 1 11 HELIX 22 22 ASN A 752 TYR A 771 1 20 HELIX 23 23 ARG A 774 VAL A 788 1 15 HELIX 24 24 ASP A 813 ILE A 823 1 11 HELIX 25 25 LYS A 837 VAL A 841 5 5 HELIX 26 26 GLY A 845 CYS A 852 1 8 HELIX 27 27 THR A 858 ASN A 867 1 10 HELIX 28 28 ASN A 867 GLY A 880 1 14 HELIX 29 29 TYR A 887 LEU A 891 5 5 SHEET 1 A 2 MET A 663 SER A 666 0 SHEET 2 A 2 ASP A 669 VAL A 672 -1 O ASP A 669 N SER A 666 SHEET 1 B 2 HIS A 717 ILE A 722 0 SHEET 2 B 2 THR A 728 CYS A 733 -1 O LEU A 729 N LEU A 721 LINK ZN ZN A 1 OE1 GLU A 440 1555 1555 1.86 LINK ZN ZN A 1 NE2 HIS A 444 1555 1555 1.87 LINK ZN ZN A 1 SG CYS A 449 1555 1555 2.36 LINK ZN ZN A 1 SG CYS A 452 1555 1555 2.31 LINK ZN ZN A 2 NE2 HIS A 717 1555 1555 2.19 LINK ZN ZN A 2 SG CYS A 733 1555 1555 2.49 LINK ZN ZN A 2 SG CYS A 852 1555 1555 2.11 LINK ZN ZN A 2 O HOH A 996 1555 1555 2.56 CISPEP 1 ASN A 408 ALA A 409 0 14.27 SITE 1 AC1 4 GLU A 440 HIS A 444 CYS A 449 CYS A 452 SITE 1 AC2 4 HIS A 717 CYS A 733 CYS A 852 HOH A 996 CRYST1 109.991 109.991 69.097 90.00 90.00 90.00 P 43 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009092 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009092 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014472 0.00000