HEADER LYASE 20-JUN-06 2HDB TITLE HMG-COA SYNTHASE FROM ENTEROCOCCUS FAECALIS. MUTATION ALANINE 110 TO TITLE 2 GLYCINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HMG-COA SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.1.3.5; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 1351; SOURCE 4 GENE: MVAS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS THIOLASE FOLD, SYNTHASE, PROTEIN, MUTANT, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR C.N.STEUSSY,A.SUTHERLIN,C.V.STAUFFACHER REVDAT 6 30-AUG-23 2HDB 1 REMARK REVDAT 5 20-OCT-21 2HDB 1 REMARK SEQADV REVDAT 4 15-APR-20 2HDB 1 REMARK REVDAT 3 24-JUL-19 2HDB 1 REMARK REVDAT 2 24-FEB-09 2HDB 1 VERSN REVDAT 1 20-MAR-07 2HDB 0 JRNL AUTH C.N.STEUSSY,A.D.ROBISON,A.M.TETRICK,J.T.KNIGHT,V.W.RODWELL, JRNL AUTH 2 C.V.STAUFFACHER,A.L.SUTHERLIN JRNL TITL A STRUCTURAL LIMITATION ON ENZYME ACTIVITY: THE CASE OF JRNL TITL 2 HMG-COA SYNTHASE. JRNL REF BIOCHEMISTRY V. 45 14407 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 17128980 JRNL DOI 10.1021/BI061505Q REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 41817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2110 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6426 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 318 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5936 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.29000 REMARK 3 B22 (A**2) : 5.44000 REMARK 3 B33 (A**2) : -5.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.278 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.200 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.657 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 320 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 321 A 381 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 36 B 320 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 321 B 381 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HDB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038222. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.24 REMARK 200 MONOCHROMATOR : DIAMOND (111) DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41829 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 26.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.26500 REMARK 200 FOR SHELL : 6.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: HMG-COA SYNTHASE NATIVE STRUCTURE FROM REMARK 200 ENTEROCOCCUS FAECALIS, PDB 1X9E. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2M AMMONIUM SULFATE, PH 6.2, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.65500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.84500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 70.92500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.65500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.84500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.92500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.65500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.84500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.92500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.65500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.84500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.92500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE DIMER IN THE ASYMMETRIC UNIT IS THE BIOLOGICALLY ACTIVE REMARK 300 UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 632 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 628 O HOH A 666 2.17 REMARK 500 O HOH A 602 O HOH A 662 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 14 28.54 -75.82 REMARK 500 GLU A 109 75.41 -174.80 REMARK 500 GLU A 173 50.01 -104.48 REMARK 500 ARG A 187 89.25 -151.28 REMARK 500 VAL A 273 -56.77 -129.02 REMARK 500 TYR A 277 -114.45 52.04 REMARK 500 THR A 377 -11.05 73.23 REMARK 500 GLU B 109 75.65 -174.71 REMARK 500 ILE B 168 -59.49 -121.15 REMARK 500 ARG B 187 89.36 -152.08 REMARK 500 VAL B 273 -52.18 -124.74 REMARK 500 TYR B 277 -113.61 54.32 REMARK 500 ASP B 365 134.08 -172.74 REMARK 500 THR B 377 -8.11 72.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YSL RELATED DB: PDB REMARK 900 RELATED ID: 1X9E RELATED DB: PDB REMARK 900 RELATED ID: 1TXT RELATED DB: PDB REMARK 900 RELATED ID: 1TVZ RELATED DB: PDB REMARK 900 RELATED ID: 1XPK RELATED DB: PDB REMARK 900 RELATED ID: 1XPM RELATED DB: PDB DBREF 2HDB A 1 383 UNP Q9FD71 Q9FD71_ENTFA 1 383 DBREF 2HDB B 1 383 UNP Q9FD71 Q9FD71_ENTFA 1 383 SEQADV 2HDB GLY A 110 UNP Q9FD71 ALA 110 ENGINEERED MUTATION SEQADV 2HDB GLY B 110 UNP Q9FD71 ALA 110 ENGINEERED MUTATION SEQRES 1 A 383 MET THR ILE GLY ILE ASP LYS ILE SER PHE PHE VAL PRO SEQRES 2 A 383 PRO TYR TYR ILE ASP MET THR ALA LEU ALA GLU ALA ARG SEQRES 3 A 383 ASN VAL ASP PRO GLY LYS PHE HIS ILE GLY ILE GLY GLN SEQRES 4 A 383 ASP GLN MET ALA VAL ASN PRO ILE SER GLN ASP ILE VAL SEQRES 5 A 383 THR PHE ALA ALA ASN ALA ALA GLU ALA ILE LEU THR LYS SEQRES 6 A 383 GLU ASP LYS GLU ALA ILE ASP MET VAL ILE VAL GLY THR SEQRES 7 A 383 GLU SER SER ILE ASP GLU SER LYS ALA ALA ALA VAL VAL SEQRES 8 A 383 LEU HIS ARG LEU MET GLY ILE GLN PRO PHE ALA ARG SER SEQRES 9 A 383 PHE GLU ILE LYS GLU GLY CYS TYR GLY ALA THR ALA GLY SEQRES 10 A 383 LEU GLN LEU ALA LYS ASN HIS VAL ALA LEU HIS PRO ASP SEQRES 11 A 383 LYS LYS VAL LEU VAL VAL ALA ALA ASP ILE ALA LYS TYR SEQRES 12 A 383 GLY LEU ASN SER GLY GLY GLU PRO THR GLN GLY ALA GLY SEQRES 13 A 383 ALA VAL ALA MET LEU VAL ALA SER GLU PRO ARG ILE LEU SEQRES 14 A 383 ALA LEU LYS GLU ASP ASN VAL MET LEU THR GLN ASP ILE SEQRES 15 A 383 TYR ASP PHE TRP ARG PRO THR GLY HIS PRO TYR PRO MET SEQRES 16 A 383 VAL ASP GLY PRO LEU SER ASN GLU THR TYR ILE GLN SER SEQRES 17 A 383 PHE ALA GLN VAL TRP ASP GLU HIS LYS LYS ARG THR GLY SEQRES 18 A 383 LEU ASP PHE ALA ASP TYR ASP ALA LEU ALA PHE HIS ILE SEQRES 19 A 383 PRO TYR THR LYS MET GLY LYS LYS ALA LEU LEU ALA LYS SEQRES 20 A 383 ILE SER ASP GLN THR GLU ALA GLU GLN GLU ARG ILE LEU SEQRES 21 A 383 ALA ARG TYR GLU GLU SER ILE ILE TYR SER ARG ARG VAL SEQRES 22 A 383 GLY ASN LEU TYR THR GLY SER LEU TYR LEU GLY LEU ILE SEQRES 23 A 383 SER LEU LEU GLU ASN ALA THR THR LEU THR ALA GLY ASN SEQRES 24 A 383 GLN ILE GLY LEU PHE SER TYR GLY SER GLY ALA VAL ALA SEQRES 25 A 383 GLU PHE PHE THR GLY GLU LEU VAL ALA GLY TYR GLN ASN SEQRES 26 A 383 HIS LEU GLN LYS GLU THR HIS LEU ALA LEU LEU ASP ASN SEQRES 27 A 383 ARG THR GLU LEU SER ILE ALA GLU TYR GLU ALA MET PHE SEQRES 28 A 383 ALA GLU THR LEU ASP THR ASP ILE ASP GLN THR LEU GLU SEQRES 29 A 383 ASP GLU LEU LYS TYR SER ILE SER ALA ILE ASN ASN THR SEQRES 30 A 383 VAL ARG SER TYR ARG ASN SEQRES 1 B 383 MET THR ILE GLY ILE ASP LYS ILE SER PHE PHE VAL PRO SEQRES 2 B 383 PRO TYR TYR ILE ASP MET THR ALA LEU ALA GLU ALA ARG SEQRES 3 B 383 ASN VAL ASP PRO GLY LYS PHE HIS ILE GLY ILE GLY GLN SEQRES 4 B 383 ASP GLN MET ALA VAL ASN PRO ILE SER GLN ASP ILE VAL SEQRES 5 B 383 THR PHE ALA ALA ASN ALA ALA GLU ALA ILE LEU THR LYS SEQRES 6 B 383 GLU ASP LYS GLU ALA ILE ASP MET VAL ILE VAL GLY THR SEQRES 7 B 383 GLU SER SER ILE ASP GLU SER LYS ALA ALA ALA VAL VAL SEQRES 8 B 383 LEU HIS ARG LEU MET GLY ILE GLN PRO PHE ALA ARG SER SEQRES 9 B 383 PHE GLU ILE LYS GLU GLY CYS TYR GLY ALA THR ALA GLY SEQRES 10 B 383 LEU GLN LEU ALA LYS ASN HIS VAL ALA LEU HIS PRO ASP SEQRES 11 B 383 LYS LYS VAL LEU VAL VAL ALA ALA ASP ILE ALA LYS TYR SEQRES 12 B 383 GLY LEU ASN SER GLY GLY GLU PRO THR GLN GLY ALA GLY SEQRES 13 B 383 ALA VAL ALA MET LEU VAL ALA SER GLU PRO ARG ILE LEU SEQRES 14 B 383 ALA LEU LYS GLU ASP ASN VAL MET LEU THR GLN ASP ILE SEQRES 15 B 383 TYR ASP PHE TRP ARG PRO THR GLY HIS PRO TYR PRO MET SEQRES 16 B 383 VAL ASP GLY PRO LEU SER ASN GLU THR TYR ILE GLN SER SEQRES 17 B 383 PHE ALA GLN VAL TRP ASP GLU HIS LYS LYS ARG THR GLY SEQRES 18 B 383 LEU ASP PHE ALA ASP TYR ASP ALA LEU ALA PHE HIS ILE SEQRES 19 B 383 PRO TYR THR LYS MET GLY LYS LYS ALA LEU LEU ALA LYS SEQRES 20 B 383 ILE SER ASP GLN THR GLU ALA GLU GLN GLU ARG ILE LEU SEQRES 21 B 383 ALA ARG TYR GLU GLU SER ILE ILE TYR SER ARG ARG VAL SEQRES 22 B 383 GLY ASN LEU TYR THR GLY SER LEU TYR LEU GLY LEU ILE SEQRES 23 B 383 SER LEU LEU GLU ASN ALA THR THR LEU THR ALA GLY ASN SEQRES 24 B 383 GLN ILE GLY LEU PHE SER TYR GLY SER GLY ALA VAL ALA SEQRES 25 B 383 GLU PHE PHE THR GLY GLU LEU VAL ALA GLY TYR GLN ASN SEQRES 26 B 383 HIS LEU GLN LYS GLU THR HIS LEU ALA LEU LEU ASP ASN SEQRES 27 B 383 ARG THR GLU LEU SER ILE ALA GLU TYR GLU ALA MET PHE SEQRES 28 B 383 ALA GLU THR LEU ASP THR ASP ILE ASP GLN THR LEU GLU SEQRES 29 B 383 ASP GLU LEU LYS TYR SER ILE SER ALA ILE ASN ASN THR SEQRES 30 B 383 VAL ARG SER TYR ARG ASN HET SO4 A 401 5 HET MES A 501 12 HET SO4 B 402 5 HET SO4 B 403 5 HET MES B 502 12 HETNAM SO4 SULFATE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 3 SO4 3(O4 S 2-) FORMUL 4 MES 2(C6 H13 N O4 S) FORMUL 8 HOH *330(H2 O) HELIX 1 1 MET A 19 ARG A 26 1 8 HELIX 2 2 GLY A 31 GLY A 36 1 6 HELIX 3 3 ASP A 50 ALA A 61 1 12 HELIX 4 4 THR A 64 ALA A 70 1 7 HELIX 5 5 ALA A 87 MET A 96 1 10 HELIX 6 6 GLU A 109 CYS A 111 5 3 HELIX 7 7 TYR A 112 HIS A 128 1 17 HELIX 8 8 GLY A 149 GLN A 153 5 5 HELIX 9 9 ASP A 197 GLY A 221 1 25 HELIX 10 10 ASP A 223 TYR A 227 5 5 HELIX 11 11 TYR A 236 SER A 249 1 14 HELIX 12 12 THR A 252 ILE A 267 1 16 HELIX 13 13 TYR A 269 VAL A 273 5 5 HELIX 14 14 LEU A 276 THR A 278 5 3 HELIX 15 15 GLY A 279 ALA A 292 1 14 HELIX 16 16 GLY A 322 LEU A 327 5 6 HELIX 17 17 GLN A 328 ASN A 338 1 11 HELIX 18 18 SER A 343 GLU A 353 1 11 HELIX 19 19 MET B 19 ARG B 26 1 8 HELIX 20 20 ASP B 29 ILE B 35 1 7 HELIX 21 21 ASP B 50 LEU B 63 1 14 HELIX 22 22 THR B 64 ALA B 70 1 7 HELIX 23 23 ALA B 87 MET B 96 1 10 HELIX 24 24 GLU B 109 CYS B 111 5 3 HELIX 25 25 TYR B 112 HIS B 128 1 17 HELIX 26 26 GLY B 149 GLN B 153 5 5 HELIX 27 27 ASP B 197 GLY B 221 1 25 HELIX 28 28 ASP B 223 TYR B 227 5 5 HELIX 29 29 TYR B 236 ILE B 248 1 13 HELIX 30 30 THR B 252 ILE B 267 1 16 HELIX 31 31 ILE B 268 VAL B 273 5 6 HELIX 32 32 LEU B 276 THR B 278 5 3 HELIX 33 33 GLY B 279 ALA B 292 1 14 HELIX 34 34 GLY B 322 HIS B 326 5 5 HELIX 35 35 GLN B 328 ASN B 338 1 11 HELIX 36 36 SER B 343 GLU B 353 1 11 SHEET 1 A16 VAL A 176 THR A 179 0 SHEET 2 A16 VAL A 311 LEU A 319 -1 O ALA A 312 N LEU A 178 SHEET 3 A16 LEU A 169 LEU A 171 -1 N ALA A 170 O GLU A 318 SHEET 4 A16 ILE A 3 PHE A 11 -1 N ILE A 3 O LEU A 171 SHEET 5 A16 GLY A 154 SER A 164 -1 O LEU A 161 N ASP A 6 SHEET 6 A16 LYS A 132 ALA A 141 -1 N ALA A 141 O GLY A 154 SHEET 7 A16 ILE A 71 GLY A 77 1 N ILE A 75 O LEU A 134 SHEET 8 A16 ARG A 103 LYS A 108 1 O ILE A 107 N VAL A 76 SHEET 9 A16 ARG B 103 LYS B 108 -1 O GLU B 106 N LYS A 108 SHEET 10 A16 ILE B 71 GLY B 77 1 N VAL B 76 O ILE B 107 SHEET 11 A16 LYS B 132 ALA B 141 1 O LEU B 134 N ILE B 75 SHEET 12 A16 GLY B 154 SER B 164 -1 O VAL B 162 N VAL B 133 SHEET 13 A16 ILE B 3 PHE B 11 -1 N ASP B 6 O LEU B 161 SHEET 14 A16 LEU B 169 LEU B 171 -1 O LEU B 171 N ILE B 3 SHEET 15 A16 VAL B 311 LEU B 319 -1 O GLU B 318 N ALA B 170 SHEET 16 A16 VAL B 176 THR B 179 -1 N LEU B 178 O ALA B 312 SHEET 1 B18 ALA A 229 PHE A 232 0 SHEET 2 B18 GLN A 300 GLY A 307 1 O GLY A 302 N ALA A 231 SHEET 3 B18 VAL A 311 LEU A 319 -1 O GLY A 317 N ILE A 301 SHEET 4 B18 LEU A 169 LEU A 171 -1 N ALA A 170 O GLU A 318 SHEET 5 B18 ILE A 3 PHE A 11 -1 N ILE A 3 O LEU A 171 SHEET 6 B18 GLY A 154 SER A 164 -1 O LEU A 161 N ASP A 6 SHEET 7 B18 LYS A 132 ALA A 141 -1 N ALA A 141 O GLY A 154 SHEET 8 B18 ILE A 71 GLY A 77 1 N ILE A 75 O LEU A 134 SHEET 9 B18 ARG A 103 LYS A 108 1 O ILE A 107 N VAL A 76 SHEET 10 B18 ARG B 103 LYS B 108 -1 O GLU B 106 N LYS A 108 SHEET 11 B18 ILE B 71 GLY B 77 1 N VAL B 76 O ILE B 107 SHEET 12 B18 LYS B 132 ALA B 141 1 O LEU B 134 N ILE B 75 SHEET 13 B18 GLY B 154 SER B 164 -1 O VAL B 162 N VAL B 133 SHEET 14 B18 ILE B 3 PHE B 11 -1 N ASP B 6 O LEU B 161 SHEET 15 B18 LEU B 169 LEU B 171 -1 O LEU B 171 N ILE B 3 SHEET 16 B18 VAL B 311 LEU B 319 -1 O GLU B 318 N ALA B 170 SHEET 17 B18 GLN B 300 GLY B 307 -1 N LEU B 303 O PHE B 315 SHEET 18 B18 ALA B 229 PHE B 232 1 N ALA B 231 O GLY B 302 SHEET 1 C 3 GLN A 41 ALA A 43 0 SHEET 2 C 3 TYR A 15 ASP A 18 -1 N ILE A 17 O MET A 42 SHEET 3 C 3 THR A 340 GLU A 341 1 O THR A 340 N TYR A 16 SHEET 1 D 2 PHE A 185 TRP A 186 0 SHEET 2 D 2 MET A 195 VAL A 196 -1 O MET A 195 N TRP A 186 SHEET 1 E 3 GLN A 361 THR A 362 0 SHEET 2 E 3 ILE A 371 ASN A 375 -1 O ILE A 374 N GLN A 361 SHEET 3 E 3 VAL A 378 TYR A 381 -1 O SER A 380 N ALA A 373 SHEET 1 F 3 GLN B 41 VAL B 44 0 SHEET 2 F 3 TYR B 15 ASP B 18 -1 N ILE B 17 O MET B 42 SHEET 3 F 3 THR B 340 GLU B 341 1 O THR B 340 N TYR B 16 SHEET 1 G 2 PHE B 185 TRP B 186 0 SHEET 2 G 2 MET B 195 VAL B 196 -1 O MET B 195 N TRP B 186 SHEET 1 H 3 GLN B 361 THR B 362 0 SHEET 2 H 3 ILE B 371 ASN B 375 -1 O ILE B 374 N GLN B 361 SHEET 3 H 3 VAL B 378 TYR B 381 -1 O SER B 380 N SER B 372 CISPEP 1 GLY A 309 ALA A 310 0 0.27 CISPEP 2 GLY B 309 ALA B 310 0 -0.19 SITE 1 AC1 3 LYS A 7 THR A 64 ARG A 167 SITE 1 AC2 2 THR B 64 LYS B 65 SITE 1 AC3 6 LYS B 7 THR B 64 ARG B 167 HOH B 575 SITE 2 AC3 6 HOH B 634 HOH B 660 SITE 1 AC4 11 CYS A 111 TYR A 143 VAL A 196 SER A 201 SITE 2 AC4 11 HIS A 233 PRO A 235 ASN A 275 TYR A 277 SITE 3 AC4 11 HOH A 596 HOH A 601 HOH A 603 SITE 1 AC5 11 CYS B 111 TYR B 143 VAL B 196 SER B 201 SITE 2 AC5 11 HIS B 233 PRO B 235 ASN B 275 TYR B 277 SITE 3 AC5 11 SER B 308 HOH B 531 HOH B 605 CRYST1 105.310 109.690 141.850 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009496 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009117 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007050 0.00000