HEADER CYTOKINE 20-JUN-06 2HDL TITLE SOLUTION STRUCTURE OF BRAK/CXCL14 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL INDUCIBLE CYTOKINE B14; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CXCL14, CHEMOKINE BRAK; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CXCL14, NJAC, SCYB14; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SG13009[PREP4]; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE308HT KEYWDS CXCL14, BRAK, CHEMOKINE, CYTOKINE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.C.PETERSON,J.A.THORPE,A.G.HARDER,B.F.VOLKMAN,S.R.SCHWARZE REVDAT 5 14-JUN-23 2HDL 1 REMARK REVDAT 4 26-FEB-20 2HDL 1 REMARK SEQADV REVDAT 3 24-FEB-09 2HDL 1 VERSN REVDAT 2 14-NOV-06 2HDL 1 JRNL REVDAT 1 24-OCT-06 2HDL 0 JRNL AUTH F.C.PETERSON,J.A.THORPE,A.G.HARDER,B.F.VOLKMAN,S.R.SCHWARZE JRNL TITL STRUCTURAL DETERMINANTS INVOLVED IN THE REGULATION OF JRNL TITL 2 CXCL14/BRAK EXPRESSION BY THE 26 S PROTEASOME. JRNL REF J.MOL.BIOL. V. 363 813 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16987528 JRNL DOI 10.1016/J.JMB.2006.08.057 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, XPLOR-NIH 2.9.3 REMARK 3 AUTHORS : SCHWIETERS, C.D., KUSZEWSKI, J.J, TJANDRA, N., REMARK 3 CLORE, G.M. (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 STRUCTURES ARE BASED ON A TOTAL OF 894 NOE CONSTRAINTS ( 366 INTRA, REMARK 3 186 SEQUENTIAL, 133 MEDIUM AND 209 LONG RANGE CONSTRAINTS) REMARK 3 AND 97 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS. REMARK 4 REMARK 4 2HDL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038228. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 300 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM CXCL14 U-15N, 13C; 100MM REMARK 210 PHOSPHATE BUFFER, 150MM NACL,95% REMARK 210 H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY (AROMATIC) REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2004, SPSCAN 1.1.0, REMARK 210 XEASY 1.3, GARANT 2.1, CYANA 2.1 REMARK 210 METHOD USED : AUTOMATED METHODS WERE USED FOR REMARK 210 BACKBONE CHEMICAL SHIFT REMARK 210 ASSIGNMENT AND ITERATIVE NOE REMARK 210 REFINEMENT. FINAL STRUCTURES REMARK 210 WERE OBTAINED BY MOLECULAR REMARK 210 DYNAMICS IN EXPLICIT SOLVEN REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: ALL TRIPLE-RESONANCE AND NOESY SPECTRA WERE ACQUIRED USING REMARK 210 A CRYOGENIC PROBE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 31 HZ2 LYS A 54 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 -83.72 66.60 REMARK 500 1 ARG A 7 -61.40 -144.17 REMARK 500 1 GLU A 31 178.04 64.29 REMARK 500 1 SER A 40 -72.13 177.20 REMARK 500 1 ARG A 45 121.22 -35.57 REMARK 500 1 PRO A 53 8.35 -66.22 REMARK 500 1 VAL A 74 84.18 77.68 REMARK 500 2 LYS A 2 26.43 -147.27 REMARK 500 2 CYS A 5 -65.44 -127.89 REMARK 500 2 GLU A 31 -163.83 53.07 REMARK 500 2 SER A 40 -170.32 169.65 REMARK 500 2 VAL A 41 -35.43 72.58 REMARK 500 3 LYS A 4 -168.84 58.56 REMARK 500 3 ARG A 7 -61.80 -121.59 REMARK 500 3 GLU A 31 175.51 68.82 REMARK 500 3 SER A 40 -30.75 163.60 REMARK 500 3 PRO A 53 0.39 -67.51 REMARK 500 3 VAL A 74 103.32 85.70 REMARK 500 4 SER A 6 -64.88 70.97 REMARK 500 4 ARG A 7 -54.74 -175.78 REMARK 500 4 GLU A 31 177.61 72.84 REMARK 500 4 SER A 40 -52.53 -179.26 REMARK 500 5 SER A 6 157.93 175.82 REMARK 500 5 LYS A 8 -55.44 -136.01 REMARK 500 5 GLU A 31 -171.36 58.14 REMARK 500 5 SER A 40 -42.19 168.46 REMARK 500 6 CYS A 3 106.47 71.25 REMARK 500 6 LYS A 4 -79.23 -95.26 REMARK 500 6 CYS A 5 -87.22 59.81 REMARK 500 6 LYS A 25 -44.22 72.33 REMARK 500 6 GLU A 31 176.00 70.17 REMARK 500 6 SER A 40 -70.02 173.05 REMARK 500 6 VAL A 41 -70.81 30.84 REMARK 500 6 PRO A 53 9.82 -67.44 REMARK 500 7 LYS A 4 -3.01 -141.40 REMARK 500 7 CYS A 5 149.69 69.34 REMARK 500 7 SER A 6 -80.16 -60.54 REMARK 500 7 ARG A 7 -78.88 -135.71 REMARK 500 7 LYS A 8 -10.35 -144.59 REMARK 500 7 LYS A 25 -55.91 71.01 REMARK 500 7 GLU A 31 -162.51 54.27 REMARK 500 7 SER A 40 -36.04 164.31 REMARK 500 8 LYS A 4 92.51 -169.59 REMARK 500 8 CYS A 5 32.05 -165.56 REMARK 500 8 HIS A 28 30.35 -87.27 REMARK 500 8 GLU A 31 -176.03 55.96 REMARK 500 8 SER A 40 -38.25 167.19 REMARK 500 8 ARG A 45 88.35 60.15 REMARK 500 8 PRO A 53 16.39 -68.01 REMARK 500 8 ARG A 73 70.71 -168.16 REMARK 500 REMARK 500 THIS ENTRY HAS 136 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7229 RELATED DB: BMRB DBREF 2HDL A 1 77 UNP O95715 SCYBE_HUMAN 23 99 SEQADV 2HDL GLY A 0 UNP O95715 CLONING ARTIFACT SEQRES 1 A 78 GLY SER LYS CYS LYS CYS SER ARG LYS GLY PRO LYS ILE SEQRES 2 A 78 ARG TYR SER ASP VAL LYS LYS LEU GLU MET LYS PRO LYS SEQRES 3 A 78 TYR PRO HIS CYS GLU GLU LYS MET VAL ILE ILE THR THR SEQRES 4 A 78 LYS SER VAL SER ARG TYR ARG GLY GLN GLU HIS CYS LEU SEQRES 5 A 78 HIS PRO LYS LEU GLN SER THR LYS ARG PHE ILE LYS TRP SEQRES 6 A 78 TYR ASN ALA TRP ASN GLU LYS ARG ARG VAL TYR GLU GLU HELIX 1 1 ARG A 13 SER A 15 5 3 HELIX 2 2 LEU A 55 ARG A 73 1 19 SHEET 1 A 3 VAL A 17 MET A 22 0 SHEET 2 A 3 VAL A 34 THR A 38 -1 O ILE A 35 N GLU A 21 SHEET 3 A 3 GLU A 48 LEU A 51 -1 O HIS A 49 N ILE A 36 SSBOND 1 CYS A 3 CYS A 29 1555 1555 2.04 SSBOND 2 CYS A 5 CYS A 50 1555 1555 2.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1