HEADER HYDROLASE 20-JUN-06 2HDO TITLE CRYSTAL STRUCTURE OF PUTATIVE PHOSPHOGLYCOLATE PHOSPHATASE TITLE 2 (NP_784602.1) FROM LACTOBACILLUS PLANTARUM AT 1.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOGLYCOLATE PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.3.18; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS PLANTARUM; SOURCE 3 ORGANISM_TAXID: 1590; SOURCE 4 GENE: NP_784602.1, GPH1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS NP_784602.1, PUTATIVE PHOSPHOGLYCOLATE PHOSPHATASE, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, JOINT CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, JCSG, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 30-OCT-24 2HDO 1 REMARK REVDAT 5 25-JAN-23 2HDO 1 REMARK SEQADV LINK REVDAT 4 18-OCT-17 2HDO 1 REMARK REVDAT 3 13-JUL-11 2HDO 1 VERSN REVDAT 2 24-FEB-09 2HDO 1 VERSN REVDAT 1 15-AUG-06 2HDO 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE PHOSPHOGLYCOLATE PHOSPHATASE JRNL TITL 2 (NP_784602.1) FROM LACTOBACILLUS PLANTARUM AT 1.50 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 30840 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1564 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1597 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1574 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 212 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 22.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65000 REMARK 3 B22 (A**2) : -0.65000 REMARK 3 B33 (A**2) : 0.98000 REMARK 3 B12 (A**2) : -0.33000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.408 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1665 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1489 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2278 ; 1.478 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3468 ; 0.808 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 220 ; 5.575 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 70 ;35.027 ;24.714 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 265 ;12.157 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;14.608 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 257 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1881 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 325 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 377 ; 0.229 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1473 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 835 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 940 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 142 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.088 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 31 ; 0.120 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.163 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1093 ; 1.984 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 420 ; 0.486 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1727 ; 2.765 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 643 ; 4.578 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 546 ; 6.504 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 207 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3027 21.9784 22.2181 REMARK 3 T TENSOR REMARK 3 T11: -0.0187 T22: -0.0232 REMARK 3 T33: -0.0273 T12: 0.0106 REMARK 3 T13: 0.0093 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.6919 L22: 0.7872 REMARK 3 L33: 0.7208 L12: -0.1209 REMARK 3 L13: 0.1494 L23: 0.5101 REMARK 3 S TENSOR REMARK 3 S11: -0.0157 S12: 0.0103 S13: 0.0008 REMARK 3 S21: 0.0465 S22: 0.0182 S23: 0.0121 REMARK 3 S31: 0.0598 S32: 0.0418 S33: -0.0025 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. 3.DUE TO SEVERAL STRONG ICE RINGS, 1316 REMARK 3 REFLECTIONS WITH INTENSITIES >=15 * (EXPECTED MEAN INTENSITY) REMARK 3 BETWEEN 1.516-1.533, 1.890-1.930, 2.025-2.080, 2.210-2.289 REMARK 3 ANGSTROMS WERE OMITTED FROM THE FINAL REFINEMENT. 4.TWO REMARK 3 PHOSPHATE IONS FROM CRYSTALLIZATION BUFFER WERE MODELED. REMARK 4 REMARK 4 2HDO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038231. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979224, 0.978954, 0.918370 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32658 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.424 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 8.784 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.42600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4M KH2PO3, 1.6M NAH2PO3, 0.1M REMARK 280 PHOSPHATE CITRATE, PH 4.2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 15.73000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.46000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.59500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.32500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 7.86500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 LYS A 208 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 1 CG SE CE REMARK 470 GLN A 42 OE1 NE2 REMARK 470 LYS A 43 CE NZ REMARK 470 GLU A 50 OE1 OE2 REMARK 470 GLU A 62 OE1 OE2 REMARK 470 GLU A 71 CD OE1 OE2 REMARK 470 ASP A 79 CG OD1 OD2 REMARK 470 GLU A 82 OE1 OE2 REMARK 470 ARG A 107 CZ NH1 NH2 REMARK 470 LYS A 135 CE NZ REMARK 470 ARG A 136 NE CZ NH1 NH2 REMARK 470 GLU A 148 CD OE1 OE2 REMARK 470 LYS A 149 CE NZ REMARK 470 GLN A 171 CD OE1 NE2 REMARK 470 GLN A 191 CG CD OE1 NE2 REMARK 470 LYS A 192 CD CE NZ REMARK 470 LYS A 199 CD CE NZ REMARK 470 GLU A 205 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 2 -165.93 -125.11 REMARK 500 ILE A 10 -61.79 -98.67 REMARK 500 THR A 13 -63.46 -130.09 REMARK 500 ASP A 162 46.23 -146.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 210 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 366929 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE REMARK 999 TARGET SEQUENCE. DBREF 2HDO A 1 208 UNP Q88YA8 Q88YA8_LACPL 1 208 SEQADV 2HDO GLY A 0 UNP Q88YA8 EXPRESSION TAG SEQADV 2HDO MSE A 1 UNP Q88YA8 MET 1 MODIFIED RESIDUE SEQADV 2HDO MSE A 7 UNP Q88YA8 MET 7 MODIFIED RESIDUE SEQADV 2HDO MSE A 25 UNP Q88YA8 MET 25 MODIFIED RESIDUE SEQADV 2HDO MSE A 47 UNP Q88YA8 MET 47 MODIFIED RESIDUE SEQADV 2HDO MSE A 53 UNP Q88YA8 MET 53 MODIFIED RESIDUE SEQADV 2HDO MSE A 74 UNP Q88YA8 MET 74 MODIFIED RESIDUE SEQADV 2HDO MSE A 115 UNP Q88YA8 MET 115 MODIFIED RESIDUE SEQADV 2HDO MSE A 121 UNP Q88YA8 MET 121 MODIFIED RESIDUE SEQADV 2HDO MSE A 122 UNP Q88YA8 MET 122 MODIFIED RESIDUE SEQADV 2HDO MSE A 124 UNP Q88YA8 MET 124 MODIFIED RESIDUE SEQADV 2HDO MSE A 184 UNP Q88YA8 MET 184 MODIFIED RESIDUE SEQRES 1 A 209 GLY MSE THR TYR GLN ALA LEU MSE PHE ASP ILE ASP GLY SEQRES 2 A 209 THR LEU THR ASN SER GLN PRO ALA TYR THR THR VAL MSE SEQRES 3 A 209 ARG GLU VAL LEU ALA THR TYR GLY LYS PRO PHE SER PRO SEQRES 4 A 209 ALA GLN ALA GLN LYS THR PHE PRO MSE ALA ALA GLU GLN SEQRES 5 A 209 ALA MSE THR GLU LEU GLY ILE ALA ALA SER GLU PHE ASP SEQRES 6 A 209 HIS PHE GLN ALA GLN TYR GLU ASP VAL MSE ALA SER HIS SEQRES 7 A 209 TYR ASP GLN ILE GLU LEU TYR PRO GLY ILE THR SER LEU SEQRES 8 A 209 PHE GLU GLN LEU PRO SER GLU LEU ARG LEU GLY ILE VAL SEQRES 9 A 209 THR SER GLN ARG ARG ASN GLU LEU GLU SER GLY MSE ARG SEQRES 10 A 209 SER TYR PRO PHE MSE MSE ARG MSE ALA VAL THR ILE SER SEQRES 11 A 209 ALA ASP ASP THR PRO LYS ARG LYS PRO ASP PRO LEU PRO SEQRES 12 A 209 LEU LEU THR ALA LEU GLU LYS VAL ASN VAL ALA PRO GLN SEQRES 13 A 209 ASN ALA LEU PHE ILE GLY ASP SER VAL SER ASP GLU GLN SEQRES 14 A 209 THR ALA GLN ALA ALA ASN VAL ASP PHE GLY LEU ALA VAL SEQRES 15 A 209 TRP GLY MSE ASP PRO ASN ALA ASP HIS GLN LYS VAL ALA SEQRES 16 A 209 HIS ARG PHE GLN LYS PRO LEU ASP ILE LEU GLU LEU PHE SEQRES 17 A 209 LYS MODRES 2HDO MSE A 1 MET SELENOMETHIONINE MODRES 2HDO MSE A 7 MET SELENOMETHIONINE MODRES 2HDO MSE A 25 MET SELENOMETHIONINE MODRES 2HDO MSE A 47 MET SELENOMETHIONINE MODRES 2HDO MSE A 53 MET SELENOMETHIONINE MODRES 2HDO MSE A 74 MET SELENOMETHIONINE MODRES 2HDO MSE A 115 MET SELENOMETHIONINE MODRES 2HDO MSE A 121 MET SELENOMETHIONINE MODRES 2HDO MSE A 122 MET SELENOMETHIONINE MODRES 2HDO MSE A 124 MET SELENOMETHIONINE MODRES 2HDO MSE A 184 MET SELENOMETHIONINE HET MSE A 1 5 HET MSE A 7 8 HET MSE A 25 8 HET MSE A 47 8 HET MSE A 53 8 HET MSE A 74 8 HET MSE A 115 8 HET MSE A 121 8 HET MSE A 122 16 HET MSE A 124 8 HET MSE A 184 8 HET PO4 A 209 5 HET PO4 A 210 5 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 PO4 2(O4 P 3-) FORMUL 4 HOH *212(H2 O) HELIX 1 1 SER A 17 THR A 31 1 15 HELIX 2 2 SER A 37 PHE A 45 1 9 HELIX 3 3 ALA A 48 LEU A 56 1 9 HELIX 4 4 ALA A 59 SER A 61 5 3 HELIX 5 5 GLU A 62 ALA A 75 1 14 HELIX 6 6 SER A 76 ILE A 81 5 6 HELIX 7 7 GLY A 86 LEU A 94 1 9 HELIX 8 8 ARG A 107 ARG A 116 1 10 HELIX 9 9 TYR A 118 MSE A 122 5 5 HELIX 10 10 SER A 129 THR A 133 5 5 HELIX 11 11 PRO A 140 VAL A 150 1 11 HELIX 12 12 ALA A 153 GLN A 155 5 3 HELIX 13 13 SER A 163 ASN A 174 1 12 HELIX 14 14 TRP A 182 MSE A 184 5 3 HELIX 15 15 ASN A 187 GLN A 191 5 5 HELIX 16 16 LYS A 199 PHE A 207 5 9 SHEET 1 A 6 MSE A 124 ILE A 128 0 SHEET 2 A 6 ARG A 99 VAL A 103 1 N LEU A 100 O ALA A 125 SHEET 3 A 6 ALA A 5 PHE A 8 1 N PHE A 8 O GLY A 101 SHEET 4 A 6 ALA A 157 GLY A 161 1 O ILE A 160 N MSE A 7 SHEET 5 A 6 ASP A 176 ALA A 180 1 O GLY A 178 N PHE A 159 SHEET 6 A 6 HIS A 195 PHE A 197 1 O PHE A 197 N LEU A 179 SHEET 1 B 2 THR A 15 ASN A 16 0 SHEET 2 B 2 GLU A 82 LEU A 83 -1 O GLU A 82 N ASN A 16 LINK C MSE A 1 N THR A 2 1555 1555 1.33 LINK C LEU A 6 N MSE A 7 1555 1555 1.33 LINK C MSE A 7 N PHE A 8 1555 1555 1.32 LINK C VAL A 24 N MSE A 25 1555 1555 1.33 LINK C MSE A 25 N ARG A 26 1555 1555 1.31 LINK C PRO A 46 N MSE A 47 1555 1555 1.33 LINK C MSE A 47 N ALA A 48 1555 1555 1.33 LINK C ALA A 52 N MSE A 53 1555 1555 1.32 LINK C MSE A 53 N THR A 54 1555 1555 1.33 LINK C VAL A 73 N MSE A 74 1555 1555 1.32 LINK C MSE A 74 N ALA A 75 1555 1555 1.33 LINK C GLY A 114 N MSE A 115 1555 1555 1.34 LINK C MSE A 115 N ARG A 116 1555 1555 1.32 LINK C PHE A 120 N MSE A 121 1555 1555 1.34 LINK C MSE A 121 N BMSE A 122 1555 1555 1.34 LINK C MSE A 121 N AMSE A 122 1555 1555 1.34 LINK C BMSE A 122 N ARG A 123 1555 1555 1.34 LINK C AMSE A 122 N ARG A 123 1555 1555 1.33 LINK C ARG A 123 N MSE A 124 1555 1555 1.32 LINK C MSE A 124 N ALA A 125 1555 1555 1.32 LINK C GLY A 183 N MSE A 184 1555 1555 1.33 LINK C MSE A 184 N ASP A 185 1555 1555 1.33 CISPEP 1 LYS A 137 PRO A 138 0 6.33 SITE 1 AC1 8 ASP A 9 ILE A 10 ASP A 11 THR A 104 SITE 2 AC1 8 SER A 105 LYS A 137 HOH A 411 HOH A 415 SITE 1 AC2 7 GLU A 27 MSE A 47 GLN A 51 GLU A 55 SITE 2 AC2 7 SER A 76 HIS A 77 HOH A 416 CRYST1 86.890 86.890 47.190 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011510 0.006650 0.000000 0.00000 SCALE2 0.000000 0.013290 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021190 0.00000 HETATM 1 N MSE A 1 32.705 41.452 39.293 1.00 28.49 N HETATM 2 CA MSE A 1 32.429 40.001 39.559 1.00 29.67 C HETATM 3 C MSE A 1 31.953 39.292 38.292 1.00 30.18 C HETATM 4 O MSE A 1 31.080 39.801 37.587 1.00 34.08 O HETATM 5 CB MSE A 1 31.381 39.835 40.668 1.00 30.86 C