HEADER STRUCTURAL GENOMICS, STRUCTURAL PROTEIN 21-JUN-06 2HEH TITLE CRYSTAL STRUCTURE OF THE KIF2C MOTOR DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: KIF2C PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: KINESIN-LIKE 6, MITOTIC CENTROMERE-ASSOCIATED KINESIN, COMPND 5 KINESIN FAMILY MEMBER 2C; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIF2C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE-3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P28A-LIC KEYWDS KINESIN, MOTOR DOMAIN, ADP, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.WANG,Y.SHEN,W.TEMPEL,R.LANDRY,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 M.SUNDSTROM,J.WEIGELT,A.BOCHKAREV,H.PARK,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 4 30-AUG-23 2HEH 1 REMARK SEQADV LINK REVDAT 3 18-OCT-17 2HEH 1 TITLE REMARK REVDAT 2 24-FEB-09 2HEH 1 VERSN REVDAT 1 18-JUL-06 2HEH 0 JRNL AUTH J.WANG,Y.SHEN,W.TEMPEL,R.LANDRY,C.H.ARROWSMITH,A.M.EDWARDS, JRNL AUTH 2 M.SUNDSTROM,J.WEIGELT,A.BOCHKAREV,H.PARK JRNL TITL CRYSTAL STRUCTURE OF THE KIF2C MOTOR DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 27850 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.955 REMARK 3 FREE R VALUE TEST SET COUNT : 1380 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1891 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2479 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01200 REMARK 3 B22 (A**2) : -0.01200 REMARK 3 B33 (A**2) : 0.02300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.192 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.544 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2567 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1736 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3472 ; 1.368 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4243 ; 1.359 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 328 ; 6.129 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;32.613 ;23.627 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 449 ;14.870 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;17.716 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 402 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2822 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 523 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 459 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1736 ; 0.206 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1204 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1403 ; 0.079 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 87 ; 0.116 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.021 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.195 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 29 ; 0.231 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.103 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1697 ; 2.858 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 661 ; 0.484 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2600 ; 4.082 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1016 ; 2.783 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 868 ; 3.905 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HEH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038254. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51791 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.71300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1V8K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 37% PEG400, 0.2M NACL, 0.1M HEPES, PH REMARK 280 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.44250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.86000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.86000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 116.16375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.86000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.86000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.72125 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.86000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.86000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 116.16375 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.86000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.86000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.72125 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 77.44250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). THE BIOLOGICAL UNIT IS REMARK 300 UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 207 REMARK 465 GLY A 208 REMARK 465 SER A 209 REMARK 465 SER A 210 REMARK 465 HIS A 211 REMARK 465 HIS A 212 REMARK 465 HIS A 213 REMARK 465 HIS A 214 REMARK 465 HIS A 215 REMARK 465 HIS A 216 REMARK 465 SER A 217 REMARK 465 SER A 218 REMARK 465 GLY A 219 REMARK 465 LEU A 220 REMARK 465 VAL A 221 REMARK 465 PRO A 222 REMARK 465 ARG A 223 REMARK 465 GLY A 224 REMARK 465 SER A 225 REMARK 465 SER A 226 REMARK 465 PHE A 227 REMARK 465 PRO A 228 REMARK 465 GLY A 360 REMARK 465 ASP A 361 REMARK 465 LEU A 362 REMARK 465 SER A 363 REMARK 465 GLY A 364 REMARK 465 LYS A 365 REMARK 465 ALA A 366 REMARK 465 GLN A 367 REMARK 465 ASN A 368 REMARK 465 ALA A 369 REMARK 465 SER A 370 REMARK 465 THR A 457 REMARK 465 SER A 458 REMARK 465 GLY A 459 REMARK 465 GLN A 460 REMARK 465 THR A 461 REMARK 465 PHE A 462 REMARK 465 ALA A 463 REMARK 465 ASN A 464 REMARK 465 SER A 465 REMARK 465 ARG A 498 REMARK 465 GLY A 499 REMARK 465 ALA A 500 REMARK 465 ASP A 501 REMARK 465 THR A 502 REMARK 465 SER A 503 REMARK 465 SER A 504 REMARK 465 ALA A 505 REMARK 465 ASP A 506 REMARK 465 ARG A 507 REMARK 465 GLN A 508 REMARK 465 THR A 509 REMARK 465 ARG A 510 REMARK 465 MET A 511 REMARK 465 GLU A 512 REMARK 465 LEU A 588 REMARK 465 SER A 589 REMARK 465 PRO A 590 REMARK 465 HIS A 591 REMARK 465 SER A 592 REMARK 465 GLY A 593 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 238 CD OE1 OE2 REMARK 470 LYS A 270 CD CE NZ REMARK 470 GLN A 271 CD OE1 NE2 REMARK 470 LYS A 276 CD CE NZ REMARK 470 GLN A 334 CD OE1 NE2 REMARK 470 LYS A 371 CE NZ REMARK 470 ASN A 386 OD1 ND2 REMARK 470 GLN A 387 OE1 NE2 REMARK 470 ARG A 391 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 392 CG CD CE NZ REMARK 470 LEU A 393 CD1 CD2 REMARK 470 GLU A 396 CD OE1 OE2 REMARK 470 LYS A 415 CG CD CE NZ REMARK 470 LYS A 418 CD CE NZ REMARK 470 ARG A 420 CD NE CZ NH1 NH2 REMARK 470 LYS A 426 CE NZ REMARK 470 LYS A 447 CD CE NZ REMARK 470 ASN A 466 CG OD1 ND2 REMARK 470 ARG A 469 CD NE CZ NH1 NH2 REMARK 470 LYS A 481 CD CE NZ REMARK 470 ARG A 483 CD NE CZ NH1 NH2 REMARK 470 GLU A 515 CG CD OE1 OE2 REMARK 470 GLN A 532 CD OE1 NE2 REMARK 470 GLU A 555 CG CD OE1 OE2 REMARK 470 GLU A 573 CG CD OE1 OE2 REMARK 470 ARG A 584 NE CZ NH1 NH2 REMARK 470 GLU A 587 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 550 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 328 -84.50 -117.01 REMARK 500 LYS A 481 42.70 -144.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 355 OG1 REMARK 620 2 ADP A 601 O2B 88.6 REMARK 620 3 HOH A 704 O 88.8 170.1 REMARK 620 4 HOH A 705 O 87.2 87.1 83.2 REMARK 620 5 HOH A 706 O 87.1 94.3 95.1 174.1 REMARK 620 6 HOH A 707 O 177.1 94.2 88.5 93.4 92.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 808 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 809 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 810 DBREF 2HEH A 225 593 UNP Q99661 KIF2C_HUMAN 225 593 SEQADV 2HEH MET A 207 UNP Q99661 CLONING ARTIFACT SEQADV 2HEH GLY A 208 UNP Q99661 CLONING ARTIFACT SEQADV 2HEH SER A 209 UNP Q99661 CLONING ARTIFACT SEQADV 2HEH SER A 210 UNP Q99661 CLONING ARTIFACT SEQADV 2HEH HIS A 211 UNP Q99661 EXPRESSION TAG SEQADV 2HEH HIS A 212 UNP Q99661 EXPRESSION TAG SEQADV 2HEH HIS A 213 UNP Q99661 EXPRESSION TAG SEQADV 2HEH HIS A 214 UNP Q99661 EXPRESSION TAG SEQADV 2HEH HIS A 215 UNP Q99661 EXPRESSION TAG SEQADV 2HEH HIS A 216 UNP Q99661 EXPRESSION TAG SEQADV 2HEH SER A 217 UNP Q99661 CLONING ARTIFACT SEQADV 2HEH SER A 218 UNP Q99661 CLONING ARTIFACT SEQADV 2HEH GLY A 219 UNP Q99661 CLONING ARTIFACT SEQADV 2HEH LEU A 220 UNP Q99661 CLONING ARTIFACT SEQADV 2HEH VAL A 221 UNP Q99661 CLONING ARTIFACT SEQADV 2HEH PRO A 222 UNP Q99661 CLONING ARTIFACT SEQADV 2HEH ARG A 223 UNP Q99661 CLONING ARTIFACT SEQADV 2HEH GLY A 224 UNP Q99661 CLONING ARTIFACT SEQRES 1 A 387 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 387 LEU VAL PRO ARG GLY SER SER PHE PRO ASN TRP GLU PHE SEQRES 3 A 387 ALA ARG MET ILE LYS GLU PHE ARG ALA THR LEU GLU CYS SEQRES 4 A 387 HIS PRO LEU THR MET THR ASP PRO ILE GLU GLU HIS ARG SEQRES 5 A 387 ILE CYS VAL CYS VAL ARG LYS ARG PRO LEU ASN LYS GLN SEQRES 6 A 387 GLU LEU ALA LYS LYS GLU ILE ASP VAL ILE SER ILE PRO SEQRES 7 A 387 SER LYS CYS LEU LEU LEU VAL HIS GLU PRO LYS LEU LYS SEQRES 8 A 387 VAL ASP LEU THR LYS TYR LEU GLU ASN GLN ALA PHE CYS SEQRES 9 A 387 PHE ASP PHE ALA PHE ASP GLU THR ALA SER ASN GLU VAL SEQRES 10 A 387 VAL TYR ARG PHE THR ALA ARG PRO LEU VAL GLN THR ILE SEQRES 11 A 387 PHE GLU GLY GLY LYS ALA THR CYS PHE ALA TYR GLY GLN SEQRES 12 A 387 THR GLY SER GLY LYS THR HIS THR MET GLY GLY ASP LEU SEQRES 13 A 387 SER GLY LYS ALA GLN ASN ALA SER LYS GLY ILE TYR ALA SEQRES 14 A 387 MET ALA SER ARG ASP VAL PHE LEU LEU LYS ASN GLN PRO SEQRES 15 A 387 CYS TYR ARG LYS LEU GLY LEU GLU VAL TYR VAL THR PHE SEQRES 16 A 387 PHE GLU ILE TYR ASN GLY LYS LEU PHE ASP LEU LEU ASN SEQRES 17 A 387 LYS LYS ALA LYS LEU ARG VAL LEU GLU ASP GLY LYS GLN SEQRES 18 A 387 GLN VAL GLN VAL VAL GLY LEU GLN GLU HIS LEU VAL ASN SEQRES 19 A 387 SER ALA ASP ASP VAL ILE LYS MET ILE ASP MET GLY SER SEQRES 20 A 387 ALA CYS ARG THR SER GLY GLN THR PHE ALA ASN SER ASN SEQRES 21 A 387 SER SER ARG SER HIS ALA CYS PHE GLN ILE ILE LEU ARG SEQRES 22 A 387 ALA LYS GLY ARG MET HIS GLY LYS PHE SER LEU VAL ASP SEQRES 23 A 387 LEU ALA GLY ASN GLU ARG GLY ALA ASP THR SER SER ALA SEQRES 24 A 387 ASP ARG GLN THR ARG MET GLU GLY ALA GLU ILE ASN LYS SEQRES 25 A 387 SER LEU LEU ALA LEU LYS GLU CYS ILE ARG ALA LEU GLY SEQRES 26 A 387 GLN ASN LYS ALA HIS THR PRO PHE ARG GLU SER LYS LEU SEQRES 27 A 387 THR GLN VAL LEU ARG ASP SER PHE ILE GLY GLU ASN SER SEQRES 28 A 387 ARG THR CYS MET ILE ALA THR ILE SER PRO GLY ILE SER SEQRES 29 A 387 SER CYS GLU TYR THR LEU ASN THR LEU ARG TYR ALA ASP SEQRES 30 A 387 ARG VAL LYS GLU LEU SER PRO HIS SER GLY HET MG A 602 1 HET ADP A 601 27 HET UNX A 801 1 HET UNX A 802 1 HET UNX A 803 1 HET UNX A 804 1 HET UNX A 805 1 HET UNX A 806 1 HET UNX A 807 1 HET UNX A 808 1 HET UNX A 809 1 HET UNX A 810 1 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 2 MG MG 2+ FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 UNX 10(X) FORMUL 14 HOH *47(H2 O) HELIX 1 1 ASN A 229 LEU A 243 1 15 HELIX 2 2 ASN A 269 LYS A 275 1 7 HELIX 3 3 SER A 320 THR A 328 1 9 HELIX 4 4 ALA A 329 GLU A 338 1 10 HELIX 5 5 GLY A 353 GLY A 359 1 7 HELIX 6 6 GLY A 372 ASN A 386 1 15 HELIX 7 7 GLN A 387 LYS A 392 1 6 HELIX 8 8 SER A 441 ARG A 456 1 16 HELIX 9 9 ASN A 466 SER A 470 5 5 HELIX 10 10 GLY A 513 GLN A 532 1 20 HELIX 11 11 PRO A 538 GLU A 541 5 4 HELIX 12 12 SER A 542 LEU A 548 1 7 HELIX 13 13 ARG A 549 ILE A 553 5 5 HELIX 14 14 GLY A 568 SER A 570 5 3 HELIX 15 15 SER A 571 LYS A 586 1 16 SHEET 1 A 9 PHE A 313 PHE A 315 0 SHEET 2 A 9 ILE A 259 LYS A 265 1 N VAL A 263 O PHE A 315 SHEET 3 A 9 SER A 557 ILE A 565 1 O ALA A 563 N CYS A 262 SHEET 4 A 9 LYS A 341 TYR A 347 1 N PHE A 345 O ILE A 562 SHEET 5 A 9 MET A 484 ASP A 492 1 O VAL A 491 N CYS A 344 SHEET 6 A 9 HIS A 471 ARG A 479 -1 N LEU A 478 O HIS A 485 SHEET 7 A 9 GLU A 396 TYR A 405 -1 N PHE A 402 O CYS A 473 SHEET 8 A 9 LYS A 408 ASP A 411 -1 O PHE A 410 N GLU A 403 SHEET 9 A 9 ALA A 417 LYS A 418 -1 O ALA A 417 N ASP A 411 SHEET 1 B 8 PHE A 313 PHE A 315 0 SHEET 2 B 8 ILE A 259 LYS A 265 1 N VAL A 263 O PHE A 315 SHEET 3 B 8 SER A 557 ILE A 565 1 O ALA A 563 N CYS A 262 SHEET 4 B 8 LYS A 341 TYR A 347 1 N PHE A 345 O ILE A 562 SHEET 5 B 8 MET A 484 ASP A 492 1 O VAL A 491 N CYS A 344 SHEET 6 B 8 HIS A 471 ARG A 479 -1 N LEU A 478 O HIS A 485 SHEET 7 B 8 GLU A 396 TYR A 405 -1 N PHE A 402 O CYS A 473 SHEET 8 B 8 HIS A 437 VAL A 439 -1 O HIS A 437 N VAL A 399 SHEET 1 C 3 ILE A 281 SER A 282 0 SHEET 2 C 3 LEU A 288 LEU A 296 -1 O LEU A 290 N SER A 282 SHEET 3 C 3 LYS A 302 CYS A 310 -1 O GLU A 305 N GLU A 293 SHEET 1 D 2 ARG A 420 GLU A 423 0 SHEET 2 D 2 VAL A 429 VAL A 432 -1 O VAL A 432 N ARG A 420 SSBOND 1 CYS A 344 CYS A 560 1555 1555 2.56 LINK OG1 THR A 355 MG MG A 602 1555 1555 1.97 LINK O2B ADP A 601 MG MG A 602 1555 1555 2.16 LINK MG MG A 602 O HOH A 704 1555 1555 2.06 LINK MG MG A 602 O HOH A 705 1555 1555 2.04 LINK MG MG A 602 O HOH A 706 1555 1555 2.04 LINK MG MG A 602 O HOH A 707 1555 1555 2.07 SITE 1 AC1 6 THR A 355 ADP A 601 HOH A 704 HOH A 705 SITE 2 AC1 6 HOH A 706 HOH A 707 SITE 1 AC2 18 ARG A 264 ARG A 266 PRO A 267 GLN A 349 SITE 2 AC2 18 THR A 350 GLY A 351 SER A 352 GLY A 353 SITE 3 AC2 18 LYS A 354 THR A 355 HIS A 356 MG A 602 SITE 4 AC2 18 HOH A 705 HOH A 706 HOH A 707 HOH A 718 SITE 5 AC2 18 HOH A 719 HOH A 733 SITE 1 AC3 2 VAL A 421 LYS A 543 SITE 1 AC4 4 ILE A 404 SER A 519 LYS A 543 LEU A 544 SITE 1 AC5 1 LYS A 297 SITE 1 AC6 4 GLU A 305 ASN A 306 GLN A 307 ARG A 580 SITE 1 AC7 3 GLU A 436 MET A 484 LYS A 487 SITE 1 AC8 1 ASP A 424 SITE 1 AC9 1 ILE A 259 SITE 1 BC1 5 MET A 358 GLY A 359 GLY A 372 TYR A 374 SITE 2 BC1 5 ALA A 375 SITE 1 BC2 1 LEU A 384 SITE 1 BC3 6 GLN A 427 HIS A 536 THR A 537 PHE A 539 SITE 2 BC3 6 ARG A 549 HOH A 709 CRYST1 79.720 79.720 154.885 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012540 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012540 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006460 0.00000