HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 21-JUN-06 2HEQ TITLE NMR STRUCTURE OF BACILLUS SUBTILIS PROTEIN YORP, NORTHEAST STRUCTURAL TITLE 2 GENOMICS TARGET SR399. COMPND MOL_ID: 1; COMPND 2 MOLECULE: YORP PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YORP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(LAMDA DE3) PMGK; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS SH3-LIKE, BSU2030, YORP, NESG, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.A.RAMELOT,J.R.CORT,D.WANG,H.JANJUA,K.CUNNINGHAM,L.-C.MA,R.XIAO, AUTHOR 2 J.LIU,M.BARAN,G.V.T.SWAPNA,T.B.ACTON,B.ROST,G.M.MONTELIONE, AUTHOR 3 M.A.KENNEDY,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 09-MAR-22 2HEQ 1 REMARK SEQADV REVDAT 2 24-FEB-09 2HEQ 1 VERSN REVDAT 1 15-AUG-06 2HEQ 0 JRNL AUTH T.A.RAMELOT,J.R.CORT,R.XIAO,G.V.T.SWAPNA,T.B.ACTON, JRNL AUTH 2 G.T.MONTELIONE,M.A.KENNEDY JRNL TITL NMR STRUCTURE OF BACILLUS SUBTILIS PROTEIN YORP, NORTHEAST JRNL TITL 2 STRUCTURAL GENOMICS TARGET SR399. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SPARKY 3.1, X-PLOR-NIH 2.10, CNS 1.1 REMARK 3 AUTHORS : T.D. GODDARD, D.G. KNELLER (SPARKY), C.D. REMARK 3 SCHWIETERS, J.J. KUSZEWSKI, N. TJANDRA, G.M. CLORE REMARK 3 (X-PLOR-NIH), A. BRUNGER, G.L. WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 590 RESTRAINTS. 507 ARE NOE- REMARK 3 DERIVED; SEQUENTIAL [(I-J)=1] = 101; MEDIUM RANGE [1<(I-J)<5] = 87; REMARK 3 LONG RANGE [(I-J)>=5] = 315; HYDROGEN BOND RESTRAINTS = 30 (2 PER REMARK 3 H-BOND); NUMBER OF NOE RESTRAINTS PER RESIDUE = 6.9 (RESIDES 3-76); REMARK 3 DIHEDRAL-ANGLE RESTRAINTS = 53 (26 PHI, 27 PSI); TOTAL NUMBER OF REMARK 3 RESTRAINTS PER RESIDUE = 8.0 (RESIDES 3-76); NUMBER OF LONG RANGE REMARK 3 RESTRAINTS PER RESIDUE = 4.3; NUMBER OF STRUCTURES COMPUTED = 20; REMARK 3 NUMBER OF STRUCTURES USED = 20. AVERAGE DISTANCE VIOLATIONS >0.1 REMARK 3 ANG = 0; AVERAGE RMS DISTANCE VIOLATION / CONSTRAINT = 0.004 REMARK 3 ANGSTROMS.; MAXIMUM DISTANCE VIOLATION 0.05. AVERAGE DIHEDRAL REMARK 3 ANGLE VIOLATIONS: >10 DEG = 0; MAX DIHEDRAL ANGLE VIOLATION = 0.45; REMARK 3 AVERAGE RMS ANGLE VIOLATION / CONSTRAINT = 0.14 DEG. RMSD VALUES: REMARK 3 BACKBONE ATOMS (N,C,C', RESIDUES 11-20,33-68) = 0.4 ANG; ALL HEAVY REMARK 3 ATOMS = 0.9 ANG; REMARK 3 PROCHECK (RESIDUES 11-20,33-68): MOST FAVORED REGIONS = 95%; REMARK 3 ADDITIONAL ALLOWED REGIONS = 5%; GENEROUSLY ALLOWED REGIONS = 0%; REMARK 3 DISALLOWED REGIONS = 1%. REMARK 3 REMARK 3 6 NON-NATIVE N-TERMINAL RESIDUES (MAGDPL) AND 8 C-TERMINAL REMARK 3 RESDIUES, INLUDING THE HIS TAG, (LEHHHHHH) WERE INCLUDED IN THE REMARK 3 STRUCTURE CALCULATION. REMARK 4 REMARK 4 2HEQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038263. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1MM YORP, U-15N, 13C; 20 MM REMARK 210 NH4OAC, 100MM NACL, 10MM DTT, REMARK 210 5MM CACL2, 0.02% NAN3, 95% H2O, REMARK 210 5% D2O; 1MM YORP, U-15N, 13C; 20 REMARK 210 MM NH4OAC, 100MM NACL, 10MM DTT, REMARK 210 5MM CACL2, 0.02% NAN3, 100% D2O; REMARK 210 0.8MM YORP, U-15N, 5%-13C; 20 MM REMARK 210 NH4OAC, 100MM NACL, 10MM DTT, REMARK 210 5MM CACL2, 0.02% NAN3, 95% H2O, REMARK 210 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 4D_13C- REMARK 210 SEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE LINUZ9, VNMR 6.1C, REMARK 210 AUTOSTRUCTURE 2.1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING, CNS WATER REMARK 210 REFINEMENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 8 -65.03 -163.13 REMARK 500 1 TYR A 9 -73.26 -137.55 REMARK 500 1 ASN A 22 29.91 -78.20 REMARK 500 1 HIS A 79 -41.15 -149.02 REMARK 500 1 HIS A 83 -163.69 61.20 REMARK 500 2 PRO A 5 -84.93 -53.35 REMARK 500 2 LEU A 6 92.76 -168.42 REMARK 500 2 TYR A 9 -122.88 61.65 REMARK 500 2 ASN A 22 90.42 -60.02 REMARK 500 2 ASN A 23 -30.45 72.05 REMARK 500 2 ARG A 25 -93.86 46.24 REMARK 500 2 TYR A 26 96.58 -165.31 REMARK 500 2 CYS A 28 103.28 -179.13 REMARK 500 2 HIS A 30 93.79 -67.01 REMARK 500 2 HIS A 31 -32.86 74.61 REMARK 500 2 HIS A 80 -78.88 -102.91 REMARK 500 2 HIS A 81 -67.99 -92.47 REMARK 500 2 HIS A 82 -70.61 -117.37 REMARK 500 3 ALA A 2 -70.94 178.09 REMARK 500 3 HIS A 31 18.26 -150.89 REMARK 500 3 ALA A 74 31.77 -98.24 REMARK 500 3 HIS A 80 117.79 73.56 REMARK 500 4 ALA A 2 97.70 65.73 REMARK 500 4 HIS A 31 -88.46 -133.48 REMARK 500 4 VAL A 32 -169.57 59.00 REMARK 500 4 HIS A 79 -64.73 -101.52 REMARK 500 5 LEU A 6 102.49 70.07 REMARK 500 5 ASN A 22 24.63 -76.64 REMARK 500 5 CYS A 28 85.70 -164.80 REMARK 500 5 LYS A 70 -77.37 -67.57 REMARK 500 5 TYR A 75 -40.07 -166.67 REMARK 500 5 LEU A 77 -74.63 -96.78 REMARK 500 5 HIS A 81 87.31 60.42 REMARK 500 5 HIS A 83 -71.82 -136.33 REMARK 500 6 TYR A 9 -138.36 -138.59 REMARK 500 6 LYS A 70 -30.76 69.94 REMARK 500 6 GLU A 78 -61.26 -144.42 REMARK 500 6 HIS A 79 45.11 -79.70 REMARK 500 7 LEU A 6 88.35 59.63 REMARK 500 7 PRO A 7 95.21 -69.36 REMARK 500 7 ASN A 22 23.71 -77.52 REMARK 500 7 ALA A 24 31.19 -86.38 REMARK 500 7 CYS A 28 103.79 -166.84 REMARK 500 7 TYR A 75 91.91 73.92 REMARK 500 7 HIS A 82 -67.01 -173.79 REMARK 500 7 HIS A 83 31.83 -155.26 REMARK 500 8 ALA A 2 -71.09 -168.93 REMARK 500 8 PRO A 7 100.41 -59.20 REMARK 500 8 ASN A 22 89.37 -54.24 REMARK 500 8 TYR A 26 82.30 -167.72 REMARK 500 REMARK 500 THIS ENTRY HAS 167 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SR399 RELATED DB: TARGETDB DBREF 2HEQ A 7 76 UNP O31898 O31898_BACSU 2 71 SEQADV 2HEQ MET A 1 UNP O31898 CLONING ARTIFACT SEQADV 2HEQ ALA A 2 UNP O31898 CLONING ARTIFACT SEQADV 2HEQ GLY A 3 UNP O31898 CLONING ARTIFACT SEQADV 2HEQ ASP A 4 UNP O31898 CLONING ARTIFACT SEQADV 2HEQ PRO A 5 UNP O31898 CLONING ARTIFACT SEQADV 2HEQ LEU A 6 UNP O31898 CLONING ARTIFACT SEQADV 2HEQ LEU A 77 UNP O31898 CLONING ARTIFACT SEQADV 2HEQ GLU A 78 UNP O31898 CLONING ARTIFACT SEQADV 2HEQ HIS A 79 UNP O31898 EXPRESSION TAG SEQADV 2HEQ HIS A 80 UNP O31898 EXPRESSION TAG SEQADV 2HEQ HIS A 81 UNP O31898 EXPRESSION TAG SEQADV 2HEQ HIS A 82 UNP O31898 EXPRESSION TAG SEQADV 2HEQ HIS A 83 UNP O31898 EXPRESSION TAG SEQADV 2HEQ HIS A 84 UNP O31898 EXPRESSION TAG SEQRES 1 A 84 MET ALA GLY ASP PRO LEU PRO LYS TYR TRP SER TYR PRO SEQRES 2 A 84 VAL GLY LEU ALA VAL GLU ILE ASN ASN ASN ALA ARG TYR SEQRES 3 A 84 GLY CYS PRO HIS HIS VAL GLY ARG LYS GLY LYS ILE ILE SEQRES 4 A 84 GLU HIS LEU HIS SER ALA THR TYR ASP TYR ALA VAL SER SEQRES 5 A 84 ASP GLU THR GLY ASP ILE THR TYR PHE LYS GLU HIS GLU SEQRES 6 A 84 LEU THR PRO LEU LYS GLY GLY LEU ALA TYR VAL LEU GLU SEQRES 7 A 84 HIS HIS HIS HIS HIS HIS HELIX 1 1 LYS A 62 HIS A 64 5 3 SHEET 1 A 5 ILE A 58 PHE A 61 0 SHEET 2 A 5 TYR A 49 ASP A 53 -1 N VAL A 51 O THR A 59 SHEET 3 A 5 LYS A 35 HIS A 41 -1 N LYS A 37 O SER A 52 SHEET 4 A 5 ALA A 17 ILE A 20 -1 N VAL A 18 O GLY A 36 SHEET 5 A 5 LEU A 66 PRO A 68 -1 O THR A 67 N GLU A 19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1