HEADER CYTOKINE 22-JUN-06 2HEV TITLE CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN OX40L AND OX40 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 4; COMPND 3 CHAIN: F; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN (RESIDUES 51-183); COMPND 5 SYNONYM: OX40 LIGAND, OX40L, GLYCOPROTEIN GP34, TAX COMPND 6 TRANSCRIPTIONALLY-ACTIVATED GLYCOPROTEIN 1, CD252 ANTIGEN; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 4; COMPND 11 CHAIN: R; COMPND 12 FRAGMENT: EXTRACELLULAR DOMAIN (RESIDUES 29-170); COMPND 13 SYNONYM: OX40L RECEPTOR, ACT35 ANTIGEN, TAX TRANSCRIPTIONALLY- COMPND 14 ACTIVATED GLYCOPROTEIN 1 RECEPTOR, CD134 ANTIGEN; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TNFSF4, TXGP1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HI5; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: TNFRSF4, TXGP1L; SOURCE 16 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 17 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: HI5; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS CYTOKINE, RECEPTOR-LIGAND COMPLEX, TNFSF, TNFRSF EXPDTA X-RAY DIFFRACTION AUTHOR S.G.HYMOWITZ,D.M.COMPAAN REVDAT 5 20-OCT-21 2HEV 1 REMARK SEQADV HETSYN REVDAT 4 29-JUL-20 2HEV 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE REVDAT 3 13-JUL-11 2HEV 1 VERSN REVDAT 2 24-FEB-09 2HEV 1 VERSN REVDAT 1 29-AUG-06 2HEV 0 JRNL AUTH D.M.COMPAAN,S.G.HYMOWITZ JRNL TITL THE CRYSTAL STRUCTURE OF THE COSTIMULATORY OX40-OX40L JRNL TITL 2 COMPLEX. JRNL REF STRUCTURE V. 14 1321 2006 JRNL REFN ISSN 0969-2126 JRNL PMID 16905106 JRNL DOI 10.1016/J.STR.2006.06.015 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22103 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2221 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 25 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.41 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1144 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2067 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.91000 REMARK 3 B22 (A**2) : 1.91000 REMARK 3 B33 (A**2) : -2.87000 REMARK 3 B12 (A**2) : 0.96000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.229 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.207 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.211 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2143 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1831 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2910 ; 1.109 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4310 ; 0.694 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 264 ; 5.866 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;35.790 ;25.104 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 360 ;14.019 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;13.332 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 320 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2359 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 393 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 343 ; 0.172 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1692 ; 0.168 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 976 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1284 ; 0.080 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 84 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.124 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 47 ; 0.158 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.328 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1708 ; 2.242 ; 2.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 537 ; 0.368 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2155 ; 2.877 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 938 ; 1.909 ; 2.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 755 ; 2.852 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 58 F 183 REMARK 3 ORIGIN FOR THE GROUP (A): -7.8785 50.6023 72.1994 REMARK 3 T TENSOR REMARK 3 T11: -0.1062 T22: -0.1850 REMARK 3 T33: -0.0686 T12: 0.0015 REMARK 3 T13: 0.0020 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 3.8381 L22: 2.1796 REMARK 3 L33: 4.3252 L12: -0.8241 REMARK 3 L13: -2.1881 L23: 0.5823 REMARK 3 S TENSOR REMARK 3 S11: -0.2276 S12: -0.0799 S13: -0.4435 REMARK 3 S21: 0.1453 S22: 0.0664 S23: 0.2325 REMARK 3 S31: 0.4190 S32: -0.0636 S33: 0.1612 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : R 29 R 108 REMARK 3 ORIGIN FOR THE GROUP (A): 13.7010 41.2586 66.6269 REMARK 3 T TENSOR REMARK 3 T11: -0.0682 T22: -0.1533 REMARK 3 T33: -0.0925 T12: 0.0389 REMARK 3 T13: 0.0388 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 1.9807 L22: 2.6417 REMARK 3 L33: 11.0623 L12: -0.2957 REMARK 3 L13: 2.3891 L23: 1.0837 REMARK 3 S TENSOR REMARK 3 S11: 0.1067 S12: 0.2259 S13: -0.2228 REMARK 3 S21: -0.2702 S22: -0.2205 S23: -0.0924 REMARK 3 S31: 0.1546 S32: 0.3839 S33: 0.1138 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : R 109 R 140 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6952 43.2929 95.7162 REMARK 3 T TENSOR REMARK 3 T11: 0.1892 T22: -0.1001 REMARK 3 T33: -0.0550 T12: 0.0496 REMARK 3 T13: 0.0457 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 3.7438 L22: 10.2790 REMARK 3 L33: 17.8915 L12: 3.7855 REMARK 3 L13: -2.0543 L23: -12.4767 REMARK 3 S TENSOR REMARK 3 S11: 0.3741 S12: 0.4377 S13: 0.5374 REMARK 3 S21: 1.1423 S22: 0.1023 S23: 0.4310 REMARK 3 S31: -1.4776 S32: -0.6530 S33: -0.4764 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : R 141 R 168 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7716 33.7127 113.0385 REMARK 3 T TENSOR REMARK 3 T11: 0.3210 T22: 0.1111 REMARK 3 T33: -0.1255 T12: -0.0831 REMARK 3 T13: 0.0000 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 12.7405 L22: 12.4875 REMARK 3 L33: 34.5604 L12: 2.0421 REMARK 3 L13: -12.3548 L23: -14.4159 REMARK 3 S TENSOR REMARK 3 S11: 0.1582 S12: -1.6300 S13: -0.6502 REMARK 3 S21: 1.3331 S22: -0.4932 S23: 0.1028 REMARK 3 S31: -1.0266 S32: 1.5312 S33: 0.3350 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HEV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038268. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22255 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.50500 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: MURINE OX40L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 20000, 0.1M MES, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 55.95150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 32.30361 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 77.74600 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 55.95150 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 32.30361 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 77.74600 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 55.95150 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 32.30361 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 77.74600 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 55.95150 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 32.30361 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 77.74600 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 55.95150 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 32.30361 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 77.74600 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 55.95150 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 32.30361 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 77.74600 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 64.60723 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 155.49200 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 64.60723 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 155.49200 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 64.60723 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 155.49200 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 64.60723 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 155.49200 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 64.60723 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 155.49200 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 64.60723 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 155.49200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE CRYSTALLOGRAPHIC ASSYMMETRIC UNIT CONSISTS OF ONE REMARK 300 LIGAND PROTOMER AND ONE RECEPTOR PROTOMER. A CRYSTALLOGRAPHIC 3- REMARK 300 FOLD AXIS GENERATES THE BIOLOGICALLY RELEVANT TRIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 55.95150 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 96.91084 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -55.95150 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 96.91084 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH F 201 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY F 47 REMARK 465 SER F 48 REMARK 465 HIS F 49 REMARK 465 MET F 50 REMARK 465 GLN F 51 REMARK 465 VAL F 52 REMARK 465 SER F 53 REMARK 465 HIS F 54 REMARK 465 ARG F 55 REMARK 465 TYR F 56 REMARK 465 PRO F 57 REMARK 465 GLY R 25 REMARK 465 SER R 26 REMARK 465 HIS R 27 REMARK 465 MET R 28 REMARK 465 ARG R 169 REMARK 465 ASP R 170 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG R 90 CB CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH F 230 O HOH F 237 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH F 255 O HOH R 225 3565 1.87 REMARK 500 O HOH F 222 O HOH R 224 3565 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU F 172 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR F 67 -43.04 -132.85 REMARK 500 GLU F 72 51.80 -106.97 REMARK 500 LYS F 73 -29.47 -161.44 REMARK 500 ASN F 136 83.75 -156.01 REMARK 500 LYS F 146 -19.46 94.56 REMARK 500 ASP R 34 52.27 -99.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HEW RELATED DB: PDB REMARK 900 RELATED ID: 2HEY RELATED DB: PDB DBREF 2HEV F 51 183 UNP P23510 TNFL4_HUMAN 51 183 DBREF 2HEV R 29 170 UNP P43489 TNR4_HUMAN 29 170 SEQADV 2HEV GLY F 47 UNP P23510 CLONING ARTIFACT SEQADV 2HEV SER F 48 UNP P23510 CLONING ARTIFACT SEQADV 2HEV HIS F 49 UNP P23510 CLONING ARTIFACT SEQADV 2HEV MET F 50 UNP P23510 CLONING ARTIFACT SEQADV 2HEV ASP F 90 UNP P23510 ASN 90 ENGINEERED MUTATION SEQADV 2HEV ASP F 114 UNP P23510 ASN 114 ENGINEERED MUTATION SEQADV 2HEV GLY R 25 UNP P43489 CLONING ARTIFACT SEQADV 2HEV SER R 26 UNP P43489 CLONING ARTIFACT SEQADV 2HEV HIS R 27 UNP P43489 CLONING ARTIFACT SEQADV 2HEV MET R 28 UNP P43489 CLONING ARTIFACT SEQRES 1 F 137 GLY SER HIS MET GLN VAL SER HIS ARG TYR PRO ARG ILE SEQRES 2 F 137 GLN SER ILE LYS VAL GLN PHE THR GLU TYR LYS LYS GLU SEQRES 3 F 137 LYS GLY PHE ILE LEU THR SER GLN LYS GLU ASP GLU ILE SEQRES 4 F 137 MET LYS VAL GLN ASP ASN SER VAL ILE ILE ASN CYS ASP SEQRES 5 F 137 GLY PHE TYR LEU ILE SER LEU LYS GLY TYR PHE SER GLN SEQRES 6 F 137 GLU VAL ASP ILE SER LEU HIS TYR GLN LYS ASP GLU GLU SEQRES 7 F 137 PRO LEU PHE GLN LEU LYS LYS VAL ARG SER VAL ASN SER SEQRES 8 F 137 LEU MET VAL ALA SER LEU THR TYR LYS ASP LYS VAL TYR SEQRES 9 F 137 LEU ASN VAL THR THR ASP ASN THR SER LEU ASP ASP PHE SEQRES 10 F 137 HIS VAL ASN GLY GLY GLU LEU ILE LEU ILE HIS GLN ASN SEQRES 11 F 137 PRO GLY GLU PHE CYS VAL LEU SEQRES 1 R 146 GLY SER HIS MET LEU HIS CYS VAL GLY ASP THR TYR PRO SEQRES 2 R 146 SER ASN ASP ARG CYS CYS HIS GLU CYS ARG PRO GLY ASN SEQRES 3 R 146 GLY MET VAL SER ARG CYS SER ARG SER GLN ASN THR VAL SEQRES 4 R 146 CYS ARG PRO CYS GLY PRO GLY PHE TYR ASN ASP VAL VAL SEQRES 5 R 146 SER SER LYS PRO CYS LYS PRO CYS THR TRP CYS ASN LEU SEQRES 6 R 146 ARG SER GLY SER GLU ARG LYS GLN LEU CYS THR ALA THR SEQRES 7 R 146 GLN ASP THR VAL CYS ARG CYS ARG ALA GLY THR GLN PRO SEQRES 8 R 146 LEU ASP SER TYR LYS PRO GLY VAL ASP CYS ALA PRO CYS SEQRES 9 R 146 PRO PRO GLY HIS PHE SER PRO GLY ASP ASN GLN ALA CYS SEQRES 10 R 146 LYS PRO TRP THR ASN CYS THR LEU ALA GLY LYS HIS THR SEQRES 11 R 146 LEU GLN PRO ALA SER ASN SER SER ASP ALA ILE CYS GLU SEQRES 12 R 146 ASP ARG ASP MODRES 2HEV ASN F 152 ASN GLYCOSYLATION SITE MODRES 2HEV ASN R 160 ASN GLYCOSYLATION SITE HET NAG F 200 14 HET NAG R 200 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 5 HOH *87(H2 O) HELIX 1 1 ASN R 88 SER R 91 5 4 SHEET 1 A 7 GLY F 74 THR F 78 0 SHEET 2 A 7 SER F 61 LYS F 70 -1 N GLN F 65 O THR F 78 SHEET 3 A 7 VAL F 165 HIS F 174 -1 O LEU F 170 N VAL F 64 SHEET 4 A 7 GLY F 99 HIS F 118 -1 N LEU F 102 O ILE F 173 SHEET 5 A 7 LYS F 148 THR F 155 -1 O ASN F 152 N SER F 116 SHEET 6 A 7 SER F 92 ILE F 94 -1 N VAL F 93 O VAL F 149 SHEET 7 A 7 VAL F 88 GLN F 89 -1 N GLN F 89 O SER F 92 SHEET 1 B 5 GLY F 74 THR F 78 0 SHEET 2 B 5 SER F 61 LYS F 70 -1 N GLN F 65 O THR F 78 SHEET 3 B 5 VAL F 165 HIS F 174 -1 O LEU F 170 N VAL F 64 SHEET 4 B 5 GLY F 99 HIS F 118 -1 N LEU F 102 O ILE F 173 SHEET 5 B 5 PHE F 127 LEU F 143 -1 O LEU F 129 N ILE F 115 SHEET 1 C 2 THR R 35 SER R 38 0 SHEET 2 C 2 ARG R 41 HIS R 44 -1 O ARG R 41 N SER R 38 SHEET 1 D 2 ASN R 50 SER R 54 0 SHEET 2 D 2 VAL R 63 PRO R 66 -1 O ARG R 65 N GLY R 51 SHEET 1 E 2 PHE R 71 TYR R 72 0 SHEET 2 E 2 LYS R 82 PRO R 83 -1 O LYS R 82 N TYR R 72 SHEET 1 F 2 SER R 93 GLN R 97 0 SHEET 2 F 2 VAL R 106 CYS R 109 -1 O ARG R 108 N GLU R 94 SHEET 1 G 2 THR R 113 PRO R 115 0 SHEET 2 G 2 CYS R 125 PRO R 127 -1 O ALA R 126 N GLN R 114 SHEET 1 H 2 HIS R 132 PHE R 133 0 SHEET 2 H 2 LYS R 142 PRO R 143 -1 O LYS R 142 N PHE R 133 SHEET 1 I 2 HIS R 153 GLN R 156 0 SHEET 2 I 2 ILE R 165 GLU R 167 -1 O ILE R 165 N LEU R 155 SSBOND 1 CYS F 97 CYS F 181 1555 1555 2.03 SSBOND 2 CYS R 31 CYS R 42 1555 1555 2.03 SSBOND 3 CYS R 43 CYS R 56 1555 1555 2.03 SSBOND 4 CYS R 46 CYS R 64 1555 1555 2.03 SSBOND 5 CYS R 67 CYS R 81 1555 1555 2.05 SSBOND 6 CYS R 84 CYS R 99 1555 1555 2.02 SSBOND 7 CYS R 87 CYS R 107 1555 1555 2.05 SSBOND 8 CYS R 109 CYS R 125 1555 1555 2.03 SSBOND 9 CYS R 128 CYS R 141 1555 1555 2.05 SSBOND 10 CYS R 147 CYS R 166 1555 1555 2.04 LINK ND2 ASN F 152 C1 NAG F 200 1555 1555 1.45 LINK ND2 ASN R 160 C1 NAG R 200 1555 1555 1.45 CRYST1 111.903 111.903 233.238 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008936 0.005159 0.000000 0.00000 SCALE2 0.000000 0.010319 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004287 0.00000