data_2HEW # _entry.id 2HEW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2HEW RCSB RCSB038269 WWPDB D_1000038269 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2hev . unspecified PDB 2hey . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2HEW _pdbx_database_status.recvd_initial_deposition_date 2006-06-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hymowitz, S.G.' 1 'Compaan, D.M.' 2 # _citation.id primary _citation.title 'The Crystal Structure of the Costimulatory OX40-OX40L Complex.' _citation.journal_abbrev Structure _citation.journal_volume 14 _citation.page_first 1321 _citation.page_last 1330 _citation.year 2006 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16905106 _citation.pdbx_database_id_DOI 10.1016/j.str.2006.06.015 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Compaan, D.M.' 1 ? primary 'Hymowitz, S.G.' 2 ? # _cell.entry_id 2HEW _cell.length_a 74.149 _cell.length_b 74.149 _cell.length_c 48.815 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HEW _symmetry.space_group_name_H-M 'P 63' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Tumor necrosis factor ligand superfamily member 4' 17064.396 1 ? ? 'extracellular domain (residues 51-198)' ? 2 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 103 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'OX40 ligand, OX40L, CD252 antigen' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMSSSPAKDPPIQRLRGAVTRCEDGQLFISSYKNEYQTMEVQNNSVVIKCDGLYIIYLKGSFFQEVKIDLHFREDHNP ISIPMLNDGRRIVFTVVASLAFKDKVYLTVNAPDTLCEHLQINDGELIVVQLTPGYCAPEGSYHSTVNQVPL ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMSSSPAKDPPIQRLRGAVTRCEDGQLFISSYKNEYQTMEVQNNSVVIKCDGLYIIYLKGSFFQEVKIDLHFREDHNP ISIPMLNDGRRIVFTVVASLAFKDKVYLTVNAPDTLCEHLQINDGELIVVQLTPGYCAPEGSYHSTVNQVPL ; _entity_poly.pdbx_strand_id F _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 SER n 1 6 SER n 1 7 SER n 1 8 PRO n 1 9 ALA n 1 10 LYS n 1 11 ASP n 1 12 PRO n 1 13 PRO n 1 14 ILE n 1 15 GLN n 1 16 ARG n 1 17 LEU n 1 18 ARG n 1 19 GLY n 1 20 ALA n 1 21 VAL n 1 22 THR n 1 23 ARG n 1 24 CYS n 1 25 GLU n 1 26 ASP n 1 27 GLY n 1 28 GLN n 1 29 LEU n 1 30 PHE n 1 31 ILE n 1 32 SER n 1 33 SER n 1 34 TYR n 1 35 LYS n 1 36 ASN n 1 37 GLU n 1 38 TYR n 1 39 GLN n 1 40 THR n 1 41 MET n 1 42 GLU n 1 43 VAL n 1 44 GLN n 1 45 ASN n 1 46 ASN n 1 47 SER n 1 48 VAL n 1 49 VAL n 1 50 ILE n 1 51 LYS n 1 52 CYS n 1 53 ASP n 1 54 GLY n 1 55 LEU n 1 56 TYR n 1 57 ILE n 1 58 ILE n 1 59 TYR n 1 60 LEU n 1 61 LYS n 1 62 GLY n 1 63 SER n 1 64 PHE n 1 65 PHE n 1 66 GLN n 1 67 GLU n 1 68 VAL n 1 69 LYS n 1 70 ILE n 1 71 ASP n 1 72 LEU n 1 73 HIS n 1 74 PHE n 1 75 ARG n 1 76 GLU n 1 77 ASP n 1 78 HIS n 1 79 ASN n 1 80 PRO n 1 81 ILE n 1 82 SER n 1 83 ILE n 1 84 PRO n 1 85 MET n 1 86 LEU n 1 87 ASN n 1 88 ASP n 1 89 GLY n 1 90 ARG n 1 91 ARG n 1 92 ILE n 1 93 VAL n 1 94 PHE n 1 95 THR n 1 96 VAL n 1 97 VAL n 1 98 ALA n 1 99 SER n 1 100 LEU n 1 101 ALA n 1 102 PHE n 1 103 LYS n 1 104 ASP n 1 105 LYS n 1 106 VAL n 1 107 TYR n 1 108 LEU n 1 109 THR n 1 110 VAL n 1 111 ASN n 1 112 ALA n 1 113 PRO n 1 114 ASP n 1 115 THR n 1 116 LEU n 1 117 CYS n 1 118 GLU n 1 119 HIS n 1 120 LEU n 1 121 GLN n 1 122 ILE n 1 123 ASN n 1 124 ASP n 1 125 GLY n 1 126 GLU n 1 127 LEU n 1 128 ILE n 1 129 VAL n 1 130 VAL n 1 131 GLN n 1 132 LEU n 1 133 THR n 1 134 PRO n 1 135 GLY n 1 136 TYR n 1 137 CYS n 1 138 ALA n 1 139 PRO n 1 140 GLU n 1 141 GLY n 1 142 SER n 1 143 TYR n 1 144 HIS n 1 145 SER n 1 146 THR n 1 147 VAL n 1 148 ASN n 1 149 GLN n 1 150 VAL n 1 151 PRO n 1 152 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene 'Tnfsf4, Ox40l, Txgp1l' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'fall armyworm' _entity_src_gen.pdbx_host_org_scientific_name 'Spodoptera frugiperda' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus Spodoptera _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain Hi5 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TNFL4_MOUSE _struct_ref.pdbx_db_accession P43488 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 51 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2HEW _struct_ref_seq.pdbx_strand_id F _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 152 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P43488 _struct_ref_seq.db_align_beg 51 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 198 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 51 _struct_ref_seq.pdbx_auth_seq_align_end 198 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2HEW GLY F 1 ? UNP P43488 ? ? 'cloning artifact' 47 1 1 2HEW SER F 2 ? UNP P43488 ? ? 'cloning artifact' 48 2 1 2HEW HIS F 3 ? UNP P43488 ? ? 'cloning artifact' 49 3 1 2HEW MET F 4 ? UNP P43488 ? ? 'cloning artifact' 50 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2HEW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.27 _exptl_crystal.density_percent_sol 45.79 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_details '0.1 M NaAcetate, 2M Ammonium Sulfate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 1,2 ? ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 210' 2003-09-09 ? 2 CCD ? ? ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M 'Horizontal focusing, 5.05 deg. asymmetric cut Si(111)' 'SINGLE WAVELENGTH' x-ray 2 2 M ? MAD x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.976 1.0 2 0.9199 1.0 3 0.9050 1.0 4 0.9202 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'CHESS BEAMLINE A1' CHESS A1 ? 0.976 2 SYNCHROTRON 'ALS BEAMLINE 5.0.2' ALS 5.0.2 ? '0.9199, 0.9050, 0.9202' # _reflns.entry_id 2HEW _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 1.45 _reflns.d_resolution_low 30 _reflns.number_all 27220 _reflns.number_obs 27220 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.068 _reflns.pdbx_netI_over_sigmaI 11.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 14.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # _reflns_shell.d_res_high 1.45 _reflns_shell.d_res_low 1.50 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.466 _reflns_shell.meanI_over_sigI_obs 3.2 _reflns_shell.pdbx_redundancy 14 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2706 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1,2 # _refine.entry_id 2HEW _refine.ls_number_reflns_obs 23933 _refine.ls_number_reflns_all 26568 _refine.pdbx_ls_sigma_I -3 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 1.45 _refine.ls_percent_reflns_obs 97.62 _refine.ls_R_factor_obs 0.16765 _refine.ls_R_factor_all 0.16765 _refine.ls_R_factor_R_work 0.16505 _refine.ls_R_factor_R_free 0.1922 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 2635 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.969 _refine.correlation_coeff_Fo_to_Fc_free 0.962 _refine.B_iso_mean 17.786 _refine.aniso_B[1][1] -0.20 _refine.aniso_B[2][2] -0.20 _refine.aniso_B[3][3] 0.30 _refine.aniso_B[1][2] -0.10 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.073 _refine.pdbx_overall_ESU_R_Free 0.064 _refine.overall_SU_ML 0.035 _refine.overall_SU_B 1.935 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1022 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.number_atoms_solvent 103 _refine_hist.number_atoms_total 1144 _refine_hist.d_res_high 1.45 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 0.022 ? 1072 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 985 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.275 1.981 ? 1461 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.753 3.000 ? 2288 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.387 5.000 ? 127 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31.155 24.490 ? 49 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.473 15.000 ? 182 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.943 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.085 0.200 ? 174 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1149 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 205 'X-RAY DIFFRACTION' ? r_nbd_refined 0.189 0.200 ? 152 'X-RAY DIFFRACTION' ? r_nbd_other 0.180 0.200 ? 983 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.171 0.200 ? 522 'X-RAY DIFFRACTION' ? r_nbtor_other 0.079 0.200 ? 663 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.171 0.200 ? 76 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other 0.038 0.200 ? 1 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.203 0.200 ? 14 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.256 0.200 ? 46 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.207 0.200 ? 17 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.794 2.500 ? 838 'X-RAY DIFFRACTION' ? r_mcbond_other 1.059 2.500 ? 258 'X-RAY DIFFRACTION' ? r_mcangle_it 3.295 5.000 ? 1061 'X-RAY DIFFRACTION' ? r_scbond_it 3.115 2.500 ? 486 'X-RAY DIFFRACTION' ? r_scangle_it 3.953 5.000 ? 400 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.822 3.000 ? 2436 'X-RAY DIFFRACTION' ? r_sphericity_free 7.292 3.000 ? 103 'X-RAY DIFFRACTION' ? r_sphericity_bonded 2.679 3.000 ? 2034 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 25 _refine_ls_shell.d_res_high 1.450 _refine_ls_shell.d_res_low 1.480 _refine_ls_shell.number_reflns_R_work 1466 _refine_ls_shell.R_factor_R_work 0.159 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.226 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 164 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2HEW _struct.title 'The X-ray crystal structure of murine OX40L' _struct.pdbx_descriptor 'Tumor necrosis factor ligand superfamily member 4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2HEW _struct_keywords.pdbx_keywords CYTOKINE _struct_keywords.text 'trimer, TNFSF, cytokine' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details 'The biological assembly is a trimer which is generated by a crystallographic 3-fold. The asymmetric unit contains a promomer.' _struct_biol.pdbx_parent_biol_id ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id PRO _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 113 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LEU _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 120 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id PRO _struct_conf.beg_auth_asym_id F _struct_conf.beg_auth_seq_id 159 _struct_conf.end_auth_comp_id LEU _struct_conf.end_auth_asym_id F _struct_conf.end_auth_seq_id 166 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 24 SG ? ? ? 1_555 A CYS 117 SG ? ? F CYS 70 F CYS 163 1_555 ? ? ? ? ? ? ? 2.062 ? ? disulf2 disulf ? ? A CYS 52 SG ? ? ? 1_555 A CYS 137 SG ? ? F CYS 98 F CYS 183 1_555 ? ? ? ? ? ? ? 2.039 ? ? covale1 covale one ? A ASN 45 ND2 ? ? ? 1_555 B NAG . C1 ? ? F ASN 91 F NAG 200 1_555 ? ? ? ? ? ? ? 1.445 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 28 ? SER A 32 ? GLN F 74 SER F 78 A 2 ARG A 16 ? GLU A 25 ? ARG F 62 GLU F 71 A 3 ILE A 122 ? GLN A 131 ? ILE F 168 GLN F 177 A 4 GLY A 54 ? PHE A 64 ? GLY F 100 PHE F 110 A 5 ARG A 91 ? LEU A 100 ? ARG F 137 LEU F 146 B 1 GLU A 42 ? GLN A 44 ? GLU F 88 GLN F 90 B 2 SER A 47 ? VAL A 49 ? SER F 93 VAL F 95 B 3 LYS A 105 ? VAL A 110 ? LYS F 151 VAL F 156 B 4 ILE A 70 ? HIS A 73 ? ILE F 116 HIS F 119 B 5 ILE A 81 ? ILE A 83 ? ILE F 127 ILE F 129 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 30 ? O PHE F 76 N ARG A 23 ? N ARG F 69 A 2 3 N GLY A 19 ? N GLY F 65 O LEU A 127 ? O LEU F 173 A 3 4 O ILE A 128 ? O ILE F 174 N TYR A 59 ? N TYR F 105 A 4 5 N TYR A 56 ? N TYR F 102 O ALA A 98 ? O ALA F 144 B 1 2 N GLN A 44 ? N GLN F 90 O SER A 47 ? O SER F 93 B 2 3 N VAL A 48 ? N VAL F 94 O VAL A 106 ? O VAL F 152 B 3 4 O TYR A 107 ? O TYR F 153 N HIS A 73 ? N HIS F 119 B 4 5 N ILE A 70 ? N ILE F 116 O ILE A 83 ? O ILE F 129 # _database_PDB_matrix.entry_id 2HEW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2HEW _atom_sites.fract_transf_matrix[1][1] 0.013486 _atom_sites.fract_transf_matrix[1][2] 0.007786 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015573 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020486 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 47 ? ? ? F . n A 1 2 SER 2 48 ? ? ? F . n A 1 3 HIS 3 49 ? ? ? F . n A 1 4 MET 4 50 ? ? ? F . n A 1 5 SER 5 51 ? ? ? F . n A 1 6 SER 6 52 ? ? ? F . n A 1 7 SER 7 53 ? ? ? F . n A 1 8 PRO 8 54 ? ? ? F . n A 1 9 ALA 9 55 ? ? ? F . n A 1 10 LYS 10 56 ? ? ? F . n A 1 11 ASP 11 57 ? ? ? F . n A 1 12 PRO 12 58 58 PRO PRO F . n A 1 13 PRO 13 59 59 PRO PRO F . n A 1 14 ILE 14 60 60 ILE ILE F . n A 1 15 GLN 15 61 61 GLN GLN F . n A 1 16 ARG 16 62 62 ARG ARG F . n A 1 17 LEU 17 63 63 LEU LEU F . n A 1 18 ARG 18 64 64 ARG ARG F . n A 1 19 GLY 19 65 65 GLY GLY F . n A 1 20 ALA 20 66 66 ALA ALA F . n A 1 21 VAL 21 67 67 VAL VAL F . n A 1 22 THR 22 68 68 THR THR F . n A 1 23 ARG 23 69 69 ARG ARG F . n A 1 24 CYS 24 70 70 CYS CYS F . n A 1 25 GLU 25 71 71 GLU GLU F . n A 1 26 ASP 26 72 72 ASP ASP F . n A 1 27 GLY 27 73 73 GLY GLY F . n A 1 28 GLN 28 74 74 GLN GLN F . n A 1 29 LEU 29 75 75 LEU LEU F . n A 1 30 PHE 30 76 76 PHE PHE F . n A 1 31 ILE 31 77 77 ILE ILE F . n A 1 32 SER 32 78 78 SER SER F . n A 1 33 SER 33 79 79 SER SER F . n A 1 34 TYR 34 80 80 TYR TYR F . n A 1 35 LYS 35 81 81 LYS LYS F . n A 1 36 ASN 36 82 82 ASN ASN F . n A 1 37 GLU 37 83 83 GLU GLU F . n A 1 38 TYR 38 84 84 TYR TYR F . n A 1 39 GLN 39 85 85 GLN GLN F . n A 1 40 THR 40 86 86 THR THR F . n A 1 41 MET 41 87 87 MET MET F . n A 1 42 GLU 42 88 88 GLU GLU F . n A 1 43 VAL 43 89 89 VAL VAL F . n A 1 44 GLN 44 90 90 GLN GLN F . n A 1 45 ASN 45 91 91 ASN ASN F . n A 1 46 ASN 46 92 92 ASN ASN F . n A 1 47 SER 47 93 93 SER SER F . n A 1 48 VAL 48 94 94 VAL VAL F . n A 1 49 VAL 49 95 95 VAL VAL F . n A 1 50 ILE 50 96 96 ILE ILE F . n A 1 51 LYS 51 97 97 LYS LYS F . n A 1 52 CYS 52 98 98 CYS CYS F . n A 1 53 ASP 53 99 99 ASP ASP F . n A 1 54 GLY 54 100 100 GLY GLY F . n A 1 55 LEU 55 101 101 LEU LEU F . n A 1 56 TYR 56 102 102 TYR TYR F . n A 1 57 ILE 57 103 103 ILE ILE F . n A 1 58 ILE 58 104 104 ILE ILE F . n A 1 59 TYR 59 105 105 TYR TYR F . n A 1 60 LEU 60 106 106 LEU LEU F . n A 1 61 LYS 61 107 107 LYS LYS F . n A 1 62 GLY 62 108 108 GLY GLY F . n A 1 63 SER 63 109 109 SER SER F . n A 1 64 PHE 64 110 110 PHE PHE F . n A 1 65 PHE 65 111 111 PHE PHE F . n A 1 66 GLN 66 112 112 GLN GLN F . n A 1 67 GLU 67 113 113 GLU GLU F . n A 1 68 VAL 68 114 114 VAL VAL F . n A 1 69 LYS 69 115 115 LYS LYS F . n A 1 70 ILE 70 116 116 ILE ILE F . n A 1 71 ASP 71 117 117 ASP ASP F . n A 1 72 LEU 72 118 118 LEU LEU F . n A 1 73 HIS 73 119 119 HIS HIS F . n A 1 74 PHE 74 120 120 PHE PHE F . n A 1 75 ARG 75 121 121 ARG ARG F . n A 1 76 GLU 76 122 122 GLU GLU F . n A 1 77 ASP 77 123 123 ASP ASP F . n A 1 78 HIS 78 124 124 HIS HIS F . n A 1 79 ASN 79 125 125 ASN ASN F . n A 1 80 PRO 80 126 126 PRO PRO F . n A 1 81 ILE 81 127 127 ILE ILE F . n A 1 82 SER 82 128 128 SER SER F . n A 1 83 ILE 83 129 129 ILE ILE F . n A 1 84 PRO 84 130 130 PRO PRO F . n A 1 85 MET 85 131 131 MET MET F . n A 1 86 LEU 86 132 132 LEU LEU F . n A 1 87 ASN 87 133 133 ASN ASN F . n A 1 88 ASP 88 134 134 ASP ASP F . n A 1 89 GLY 89 135 135 GLY GLY F . n A 1 90 ARG 90 136 136 ARG ARG F . n A 1 91 ARG 91 137 137 ARG ARG F . n A 1 92 ILE 92 138 138 ILE ILE F . n A 1 93 VAL 93 139 139 VAL VAL F . n A 1 94 PHE 94 140 140 PHE PHE F . n A 1 95 THR 95 141 141 THR THR F . n A 1 96 VAL 96 142 142 VAL VAL F . n A 1 97 VAL 97 143 143 VAL VAL F . n A 1 98 ALA 98 144 144 ALA ALA F . n A 1 99 SER 99 145 145 SER SER F . n A 1 100 LEU 100 146 146 LEU LEU F . n A 1 101 ALA 101 147 147 ALA ALA F . n A 1 102 PHE 102 148 148 PHE PHE F . n A 1 103 LYS 103 149 149 LYS LYS F . n A 1 104 ASP 104 150 150 ASP ASP F . n A 1 105 LYS 105 151 151 LYS LYS F . n A 1 106 VAL 106 152 152 VAL VAL F . n A 1 107 TYR 107 153 153 TYR TYR F . n A 1 108 LEU 108 154 154 LEU LEU F . n A 1 109 THR 109 155 155 THR THR F . n A 1 110 VAL 110 156 156 VAL VAL F . n A 1 111 ASN 111 157 157 ASN ASN F . n A 1 112 ALA 112 158 158 ALA ALA F . n A 1 113 PRO 113 159 159 PRO PRO F . n A 1 114 ASP 114 160 160 ASP ASP F . n A 1 115 THR 115 161 161 THR THR F . n A 1 116 LEU 116 162 162 LEU LEU F . n A 1 117 CYS 117 163 163 CYS CYS F . n A 1 118 GLU 118 164 164 GLU GLU F . n A 1 119 HIS 119 165 165 HIS HIS F . n A 1 120 LEU 120 166 166 LEU LEU F . n A 1 121 GLN 121 167 167 GLN GLN F . n A 1 122 ILE 122 168 168 ILE ILE F . n A 1 123 ASN 123 169 169 ASN ASN F . n A 1 124 ASP 124 170 170 ASP ASP F . n A 1 125 GLY 125 171 171 GLY GLY F . n A 1 126 GLU 126 172 172 GLU GLU F . n A 1 127 LEU 127 173 173 LEU LEU F . n A 1 128 ILE 128 174 174 ILE ILE F . n A 1 129 VAL 129 175 175 VAL VAL F . n A 1 130 VAL 130 176 176 VAL VAL F . n A 1 131 GLN 131 177 177 GLN GLN F . n A 1 132 LEU 132 178 178 LEU LEU F . n A 1 133 THR 133 179 179 THR THR F . n A 1 134 PRO 134 180 180 PRO PRO F . n A 1 135 GLY 135 181 181 GLY GLY F . n A 1 136 TYR 136 182 182 TYR TYR F . n A 1 137 CYS 137 183 183 CYS CYS F . n A 1 138 ALA 138 184 184 ALA ALA F . n A 1 139 PRO 139 185 185 PRO PRO F . n A 1 140 GLU 140 186 ? ? ? F . n A 1 141 GLY 141 187 ? ? ? F . n A 1 142 SER 142 188 ? ? ? F . n A 1 143 TYR 143 189 ? ? ? F . n A 1 144 HIS 144 190 ? ? ? F . n A 1 145 SER 145 191 ? ? ? F . n A 1 146 THR 146 192 ? ? ? F . n A 1 147 VAL 147 193 ? ? ? F . n A 1 148 ASN 148 194 ? ? ? F . n A 1 149 GLN 149 195 ? ? ? F . n A 1 150 VAL 150 196 ? ? ? F . n A 1 151 PRO 151 197 ? ? ? F . n A 1 152 LEU 152 198 ? ? ? F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG 1 200 200 NAG NAG F . C 3 SO4 1 201 201 SO4 SO4 F . D 4 HOH 1 202 102 HOH HOH F . D 4 HOH 2 203 103 HOH HOH F . D 4 HOH 3 204 104 HOH HOH F . D 4 HOH 4 205 105 HOH HOH F . D 4 HOH 5 206 107 HOH HOH F . D 4 HOH 6 207 108 HOH HOH F . D 4 HOH 7 208 109 HOH HOH F . D 4 HOH 8 209 110 HOH HOH F . D 4 HOH 9 210 111 HOH HOH F . D 4 HOH 10 211 112 HOH HOH F . D 4 HOH 11 212 113 HOH HOH F . D 4 HOH 12 213 114 HOH HOH F . D 4 HOH 13 214 115 HOH HOH F . D 4 HOH 14 215 116 HOH HOH F . D 4 HOH 15 216 117 HOH HOH F . D 4 HOH 16 217 118 HOH HOH F . D 4 HOH 17 218 119 HOH HOH F . D 4 HOH 18 219 120 HOH HOH F . D 4 HOH 19 220 121 HOH HOH F . D 4 HOH 20 221 122 HOH HOH F . D 4 HOH 21 222 123 HOH HOH F . D 4 HOH 22 223 124 HOH HOH F . D 4 HOH 23 224 125 HOH HOH F . D 4 HOH 24 225 126 HOH HOH F . D 4 HOH 25 226 127 HOH HOH F . D 4 HOH 26 227 128 HOH HOH F . D 4 HOH 27 228 129 HOH HOH F . D 4 HOH 28 229 130 HOH HOH F . D 4 HOH 29 230 131 HOH HOH F . D 4 HOH 30 231 132 HOH HOH F . D 4 HOH 31 232 133 HOH HOH F . D 4 HOH 32 233 134 HOH HOH F . D 4 HOH 33 234 135 HOH HOH F . D 4 HOH 34 235 136 HOH HOH F . D 4 HOH 35 236 137 HOH HOH F . D 4 HOH 36 237 138 HOH HOH F . D 4 HOH 37 238 139 HOH HOH F . D 4 HOH 38 239 140 HOH HOH F . D 4 HOH 39 240 141 HOH HOH F . D 4 HOH 40 241 142 HOH HOH F . D 4 HOH 41 242 143 HOH HOH F . D 4 HOH 42 243 144 HOH HOH F . D 4 HOH 43 244 145 HOH HOH F . D 4 HOH 44 245 146 HOH HOH F . D 4 HOH 45 246 148 HOH HOH F . D 4 HOH 46 247 149 HOH HOH F . D 4 HOH 47 248 150 HOH HOH F . D 4 HOH 48 249 151 HOH HOH F . D 4 HOH 49 250 153 HOH HOH F . D 4 HOH 50 251 154 HOH HOH F . D 4 HOH 51 252 155 HOH HOH F . D 4 HOH 52 253 156 HOH HOH F . D 4 HOH 53 254 157 HOH HOH F . D 4 HOH 54 255 158 HOH HOH F . D 4 HOH 55 256 159 HOH HOH F . D 4 HOH 56 257 160 HOH HOH F . D 4 HOH 57 258 163 HOH HOH F . D 4 HOH 58 259 166 HOH HOH F . D 4 HOH 59 260 167 HOH HOH F . D 4 HOH 60 261 168 HOH HOH F . D 4 HOH 61 262 169 HOH HOH F . D 4 HOH 62 263 170 HOH HOH F . D 4 HOH 63 264 171 HOH HOH F . D 4 HOH 64 265 172 HOH HOH F . D 4 HOH 65 266 173 HOH HOH F . D 4 HOH 66 267 176 HOH HOH F . D 4 HOH 67 268 177 HOH HOH F . D 4 HOH 68 269 178 HOH HOH F . D 4 HOH 69 270 179 HOH HOH F . D 4 HOH 70 271 180 HOH HOH F . D 4 HOH 71 272 181 HOH HOH F . D 4 HOH 72 273 182 HOH HOH F . D 4 HOH 73 274 183 HOH HOH F . D 4 HOH 74 275 184 HOH HOH F . D 4 HOH 75 276 185 HOH HOH F . D 4 HOH 76 277 186 HOH HOH F . D 4 HOH 77 278 187 HOH HOH F . D 4 HOH 78 279 188 HOH HOH F . D 4 HOH 79 280 190 HOH HOH F . D 4 HOH 80 281 193 HOH HOH F . D 4 HOH 81 282 195 HOH HOH F . D 4 HOH 82 283 198 HOH HOH F . D 4 HOH 83 284 199 HOH HOH F . D 4 HOH 84 285 200 HOH HOH F . D 4 HOH 85 286 201 HOH HOH F . D 4 HOH 86 287 202 HOH HOH F . D 4 HOH 87 288 206 HOH HOH F . D 4 HOH 88 289 207 HOH HOH F . D 4 HOH 89 290 208 HOH HOH F . D 4 HOH 90 291 209 HOH HOH F . D 4 HOH 91 292 210 HOH HOH F . D 4 HOH 92 293 211 HOH HOH F . D 4 HOH 93 294 212 HOH HOH F . D 4 HOH 94 295 213 HOH HOH F . D 4 HOH 95 296 214 HOH HOH F . D 4 HOH 96 297 215 HOH HOH F . D 4 HOH 97 298 216 HOH HOH F . D 4 HOH 98 299 217 HOH HOH F . D 4 HOH 99 300 218 HOH HOH F . D 4 HOH 100 301 219 HOH HOH F . D 4 HOH 101 302 220 HOH HOH F . D 4 HOH 102 303 221 HOH HOH F . D 4 HOH 103 304 222 HOH HOH F . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 45 _pdbx_struct_mod_residue.auth_asym_id F _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 91 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5420 ? 1 MORE -58 ? 1 'SSA (A^2)' 18140 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 37.0745000000 0.8660254038 -0.5000000000 0.0000000000 64.2149176652 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5000000000 0.8660254038 0.0000000000 -37.0745000000 -0.8660254038 -0.5000000000 0.0000000000 64.2149176652 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 F HOH 246 ? D HOH . 2 1 F HOH 292 ? D HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-08-29 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' entity 3 4 'Structure model' pdbx_chem_comp_identifier 4 4 'Structure model' pdbx_entity_nonpoly 5 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_ref_seq_dif 8 4 'Structure model' struct_site 9 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.type' 3 4 'Structure model' '_entity.pdbx_description' 4 4 'Structure model' '_pdbx_entity_nonpoly.name' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 4 'Structure model' '_struct_conn.pdbx_role' 7 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -8.9097 _pdbx_refine_tls.origin_y 54.0568 _pdbx_refine_tls.origin_z 32.7820 _pdbx_refine_tls.T[1][1] -0.0281 _pdbx_refine_tls.T[2][2] -0.0606 _pdbx_refine_tls.T[3][3] -0.0220 _pdbx_refine_tls.T[1][2] 0.0006 _pdbx_refine_tls.T[1][3] -0.0113 _pdbx_refine_tls.T[2][3] -0.0169 _pdbx_refine_tls.L[1][1] 1.2563 _pdbx_refine_tls.L[2][2] 1.8668 _pdbx_refine_tls.L[3][3] 1.6017 _pdbx_refine_tls.L[1][2] 0.1382 _pdbx_refine_tls.L[1][3] 0.0472 _pdbx_refine_tls.L[2][3] 1.0084 _pdbx_refine_tls.S[1][1] 0.0001 _pdbx_refine_tls.S[1][2] -0.0610 _pdbx_refine_tls.S[1][3] 0.1595 _pdbx_refine_tls.S[2][1] 0.0766 _pdbx_refine_tls.S[2][2] -0.0924 _pdbx_refine_tls.S[2][3] 0.1510 _pdbx_refine_tls.S[3][1] -0.0310 _pdbx_refine_tls.S[3][2] -0.1332 _pdbx_refine_tls.S[3][3] 0.0923 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id F _pdbx_refine_tls_group.beg_auth_seq_id 58 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 12 _pdbx_refine_tls_group.end_auth_asym_id F _pdbx_refine_tls_group.end_auth_seq_id 201 _pdbx_refine_tls_group.end_label_asym_id C _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 SHARP phasing . ? 2 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 F _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 300 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 F _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 301 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.91 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id F _pdbx_validate_torsion.auth_seq_id 149 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 91.17 _pdbx_validate_torsion.psi -10.41 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 F GLY 47 ? A GLY 1 2 1 Y 1 F SER 48 ? A SER 2 3 1 Y 1 F HIS 49 ? A HIS 3 4 1 Y 1 F MET 50 ? A MET 4 5 1 Y 1 F SER 51 ? A SER 5 6 1 Y 1 F SER 52 ? A SER 6 7 1 Y 1 F SER 53 ? A SER 7 8 1 Y 1 F PRO 54 ? A PRO 8 9 1 Y 1 F ALA 55 ? A ALA 9 10 1 Y 1 F LYS 56 ? A LYS 10 11 1 Y 1 F ASP 57 ? A ASP 11 12 1 Y 1 F GLU 186 ? A GLU 140 13 1 Y 1 F GLY 187 ? A GLY 141 14 1 Y 1 F SER 188 ? A SER 142 15 1 Y 1 F TYR 189 ? A TYR 143 16 1 Y 1 F HIS 190 ? A HIS 144 17 1 Y 1 F SER 191 ? A SER 145 18 1 Y 1 F THR 192 ? A THR 146 19 1 Y 1 F VAL 193 ? A VAL 147 20 1 Y 1 F ASN 194 ? A ASN 148 21 1 Y 1 F GLN 195 ? A GLN 149 22 1 Y 1 F VAL 196 ? A VAL 150 23 1 Y 1 F PRO 197 ? A PRO 151 24 1 Y 1 F LEU 198 ? A LEU 152 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 3 'SULFATE ION' SO4 4 water HOH #