HEADER HYDROLASE 22-JUN-06 2HEZ TITLE BIFIDOBACTERIUM LONGUM BILE SALT HYDROLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BILE SALT HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.1.24; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BIFIDOBACTERIUM LONGUM; SOURCE 3 ORGANISM_TAXID: 216816; SOURCE 4 GENE: BSH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET 26B KEYWDS ALPHA, BETA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.G.SURESH,R.S.KUMAR,J.A.BRANNIGAN REVDAT 6 15-NOV-23 2HEZ 1 REMARK REVDAT 5 30-AUG-23 2HEZ 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2HEZ 1 VERSN REVDAT 3 24-FEB-09 2HEZ 1 VERSN REVDAT 2 07-NOV-06 2HEZ 1 JRNL REVDAT 1 19-SEP-06 2HEZ 0 JRNL AUTH R.S.KUMAR,J.A.BRANNIGAN,A.A.PRABHUNE,A.V.PUNDLE,G.G.DODSON, JRNL AUTH 2 E.J.DODSON,C.G.SURESH JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF A CONJUGATED BILE SALT JRNL TITL 2 HYDROLASE FROM BIFIDOBACTERIUM LONGUM REVEALS AN JRNL TITL 3 EVOLUTIONARY RELATIONSHIP WITH PENICILLIN V ACYLASE. JRNL REF J.BIOL.CHEM. V. 281 32516 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16905539 JRNL DOI 10.1074/JBC.M604172200 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 35045 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1844 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2519 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 137 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4932 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 227 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.38000 REMARK 3 B22 (A**2) : -0.38000 REMARK 3 B33 (A**2) : 0.58000 REMARK 3 B12 (A**2) : -0.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.264 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.211 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.149 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.727 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5035 ; 0.024 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6848 ; 2.184 ; 1.922 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 626 ; 7.242 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 256 ;37.850 ;24.219 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 747 ;18.621 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;22.874 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 718 ; 0.144 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3988 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2456 ; 0.250 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3455 ; 0.324 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 308 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 168 ; 0.233 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.154 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3181 ; 1.236 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4992 ; 2.065 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2150 ; 3.138 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1856 ; 4.702 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HEZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038271. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRROR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37135 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 3PVA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE 30% W/V, 0.5 M SODIUM REMARK 280 FORMATE, SUCROSE (1M) 100ML, 40 UL OF B-OCTYL GLUCOSIDASE (0.50% REMARK 280 W/V), PH 6.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 303K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.01867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.00933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.00933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 78.01867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED REMARK 300 BY THE TWO FOLD AXIS: -X+1, -Y, Z+3/2. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 15770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -149.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 39.00933 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ARG A 316 REMARK 475 ARG B 316 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ALA A 315 C O CB REMARK 480 THR B 2 CA REMARK 480 ALA B 315 C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD2 HIS B 214 O HOH A 416 5555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 25 CE1 TYR A 25 CZ 0.094 REMARK 500 GLU A 195 CB GLU A 195 CG 0.116 REMARK 500 ASP B 177 CB ASP B 177 CG 0.144 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 5 CG - CD - NE ANGL. DEV. = -12.6 DEGREES REMARK 500 ASP A 9 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG A 17 CG - CD - NE ANGL. DEV. = -14.1 DEGREES REMARK 500 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 17 NE - CZ - NH2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 228 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 228 NE - CZ - NH2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ARG A 272 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 297 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 297 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 THR B 2 CA - CB - CG2 ANGL. DEV. = -21.3 DEGREES REMARK 500 THR B 2 N - CA - C ANGL. DEV. = -26.3 DEGREES REMARK 500 THR B 2 CA - C - N ANGL. DEV. = -13.2 DEGREES REMARK 500 ARG B 17 CG - CD - NE ANGL. DEV. = -13.6 DEGREES REMARK 500 ARG B 17 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 17 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ASP B 168 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP B 177 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG B 225 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG B 228 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 228 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 47 120.88 171.29 REMARK 500 ALA A 61 -126.07 66.48 REMARK 500 PHE A 82 33.40 -152.23 REMARK 500 TYR A 85 -50.59 -126.92 REMARK 500 ASP A 146 -149.79 -126.54 REMARK 500 THR A 171 -117.91 -129.00 REMARK 500 ASN A 172 -134.98 -118.86 REMARK 500 PRO A 174 -141.57 -83.90 REMARK 500 ALA A 263 116.46 -162.23 REMARK 500 ASN A 284 56.73 32.78 REMARK 500 ALA A 302 -17.87 -39.16 REMARK 500 ALA A 315 -154.07 -175.08 REMARK 500 LYS B 49 72.51 -101.90 REMARK 500 ALA B 61 -135.88 49.04 REMARK 500 PHE B 82 35.90 -143.69 REMARK 500 TYR B 85 -50.54 -133.73 REMARK 500 SER B 87 126.34 -174.43 REMARK 500 THR B 101 -64.61 -22.10 REMARK 500 PRO B 133 128.57 -39.72 REMARK 500 ASP B 146 -157.22 -123.86 REMARK 500 THR B 171 -129.67 -135.45 REMARK 500 ASN B 172 -138.90 -116.91 REMARK 500 PRO B 174 -146.61 -84.83 REMARK 500 ASN B 284 60.56 27.37 REMARK 500 ALA B 302 -14.82 -46.58 REMARK 500 ASP B 305 93.44 -67.98 REMARK 500 SER B 308 177.30 -47.20 REMARK 500 SER B 309 -2.76 -140.45 REMARK 500 ALA B 315 -144.18 -173.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR B 2 -14.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 317 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HF0 RELATED DB: PDB DBREF 2HEZ A 1 316 UNP Q9KK62 Q9KK62_BIFLO 2 317 DBREF 2HEZ B 1 316 UNP Q9KK62 Q9KK62_BIFLO 2 317 SEQADV 2HEZ OCS A 1 UNP Q9KK62 CYS 2 MODIFIED RESIDUE SEQADV 2HEZ OCS B 1 UNP Q9KK62 CYS 2 MODIFIED RESIDUE SEQRES 1 A 316 OCS THR GLY VAL ARG PHE SER ASP ASP GLU GLY ASN THR SEQRES 2 A 316 TYR PHE GLY ARG ASN LEU ASP TRP SER PHE SER TYR GLY SEQRES 3 A 316 GLU THR ILE LEU VAL THR PRO ARG GLY TYR HIS TYR ASP SEQRES 4 A 316 THR VAL PHE GLY ALA GLY GLY LYS ALA LYS PRO ASN ALA SEQRES 5 A 316 VAL ILE GLY VAL GLY VAL VAL MET ALA ASP ARG PRO MET SEQRES 6 A 316 TYR PHE ASP CYS ALA ASN GLU HIS GLY LEU ALA ILE ALA SEQRES 7 A 316 GLY LEU ASN PHE PRO GLY TYR ALA SER PHE VAL HIS GLU SEQRES 8 A 316 PRO VAL GLU GLY THR GLU ASN VAL ALA THR PHE GLU PHE SEQRES 9 A 316 PRO LEU TRP VAL ALA ARG ASN PHE ASP SER VAL ASP GLU SEQRES 10 A 316 VAL GLU GLU THR LEU ARG ASN VAL THR LEU VAL SER GLN SEQRES 11 A 316 ILE VAL PRO GLY GLN GLN GLU SER LEU LEU HIS TRP PHE SEQRES 12 A 316 ILE GLY ASP GLY LYS ARG SER ILE VAL VAL GLU GLN MET SEQRES 13 A 316 ALA ASP GLY MET HIS VAL HIS HIS ASP ASP VAL ASP VAL SEQRES 14 A 316 LEU THR ASN GLN PRO THR PHE ASP PHE HIS MET GLU ASN SEQRES 15 A 316 LEU ARG ASN TYR MET CYS VAL SER ASN GLU MET ALA GLU SEQRES 16 A 316 PRO THR SER TRP GLY LYS ALA SER LEU THR ALA TRP GLY SEQRES 17 A 316 ALA GLY VAL GLY MET HIS GLY ILE PRO GLY ASP VAL SER SEQRES 18 A 316 SER PRO SER ARG PHE VAL ARG VAL ALA TYR THR ASN ALA SEQRES 19 A 316 HIS TYR PRO GLN GLN ASN ASP GLU ALA ALA ASN VAL SER SEQRES 20 A 316 ARG LEU PHE HIS THR LEU GLY SER VAL GLN MET VAL ASP SEQRES 21 A 316 GLY MET ALA LYS MET GLY ASP GLY GLN PHE GLU ARG THR SEQRES 22 A 316 LEU PHE THR SER GLY TYR SER SER LYS THR ASN THR TYR SEQRES 23 A 316 TYR MET ASN THR TYR ASP ASP PRO ALA ILE ARG SER TYR SEQRES 24 A 316 ALA MET ALA ASP TYR ASP MET ASP SER SER GLU LEU ILE SEQRES 25 A 316 SER VAL ALA ARG SEQRES 1 B 316 OCS THR GLY VAL ARG PHE SER ASP ASP GLU GLY ASN THR SEQRES 2 B 316 TYR PHE GLY ARG ASN LEU ASP TRP SER PHE SER TYR GLY SEQRES 3 B 316 GLU THR ILE LEU VAL THR PRO ARG GLY TYR HIS TYR ASP SEQRES 4 B 316 THR VAL PHE GLY ALA GLY GLY LYS ALA LYS PRO ASN ALA SEQRES 5 B 316 VAL ILE GLY VAL GLY VAL VAL MET ALA ASP ARG PRO MET SEQRES 6 B 316 TYR PHE ASP CYS ALA ASN GLU HIS GLY LEU ALA ILE ALA SEQRES 7 B 316 GLY LEU ASN PHE PRO GLY TYR ALA SER PHE VAL HIS GLU SEQRES 8 B 316 PRO VAL GLU GLY THR GLU ASN VAL ALA THR PHE GLU PHE SEQRES 9 B 316 PRO LEU TRP VAL ALA ARG ASN PHE ASP SER VAL ASP GLU SEQRES 10 B 316 VAL GLU GLU THR LEU ARG ASN VAL THR LEU VAL SER GLN SEQRES 11 B 316 ILE VAL PRO GLY GLN GLN GLU SER LEU LEU HIS TRP PHE SEQRES 12 B 316 ILE GLY ASP GLY LYS ARG SER ILE VAL VAL GLU GLN MET SEQRES 13 B 316 ALA ASP GLY MET HIS VAL HIS HIS ASP ASP VAL ASP VAL SEQRES 14 B 316 LEU THR ASN GLN PRO THR PHE ASP PHE HIS MET GLU ASN SEQRES 15 B 316 LEU ARG ASN TYR MET CYS VAL SER ASN GLU MET ALA GLU SEQRES 16 B 316 PRO THR SER TRP GLY LYS ALA SER LEU THR ALA TRP GLY SEQRES 17 B 316 ALA GLY VAL GLY MET HIS GLY ILE PRO GLY ASP VAL SER SEQRES 18 B 316 SER PRO SER ARG PHE VAL ARG VAL ALA TYR THR ASN ALA SEQRES 19 B 316 HIS TYR PRO GLN GLN ASN ASP GLU ALA ALA ASN VAL SER SEQRES 20 B 316 ARG LEU PHE HIS THR LEU GLY SER VAL GLN MET VAL ASP SEQRES 21 B 316 GLY MET ALA LYS MET GLY ASP GLY GLN PHE GLU ARG THR SEQRES 22 B 316 LEU PHE THR SER GLY TYR SER SER LYS THR ASN THR TYR SEQRES 23 B 316 TYR MET ASN THR TYR ASP ASP PRO ALA ILE ARG SER TYR SEQRES 24 B 316 ALA MET ALA ASP TYR ASP MET ASP SER SER GLU LEU ILE SEQRES 25 B 316 SER VAL ALA ARG MODRES 2HEZ OCS A 1 CYS CYSTEINESULFONIC ACID MODRES 2HEZ OCS B 1 CYS CYSTEINESULFONIC ACID HET OCS A 1 9 HET OCS B 1 9 HET SO4 B 317 5 HETNAM OCS CYSTEINESULFONIC ACID HETNAM SO4 SULFATE ION FORMUL 1 OCS 2(C3 H7 N O5 S) FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *227(H2 O) HELIX 1 1 GLU A 103 PHE A 112 1 10 HELIX 2 2 SER A 114 ARG A 123 1 10 HELIX 3 3 THR A 175 ARG A 184 1 10 HELIX 4 4 ASN A 185 MET A 187 5 3 HELIX 5 5 GLY A 210 HIS A 214 5 5 HELIX 6 6 SER A 221 TYR A 236 1 16 HELIX 7 7 ASP A 241 SER A 255 1 15 HELIX 8 8 ALA A 302 TYR A 304 5 3 HELIX 9 9 GLU B 103 PHE B 112 1 10 HELIX 10 10 SER B 114 ARG B 123 1 10 HELIX 11 11 THR B 175 ARG B 184 1 10 HELIX 12 12 ASN B 185 MET B 187 5 3 HELIX 13 13 GLY B 210 HIS B 214 5 5 HELIX 14 14 SER B 221 TYR B 236 1 16 HELIX 15 15 ASP B 241 SER B 255 1 15 HELIX 16 16 ALA B 302 TYR B 304 5 3 SHEET 1 A 6 VAL A 169 LEU A 170 0 SHEET 2 A 6 THR A 2 SER A 7 -1 N GLY A 3 O LEU A 170 SHEET 3 A 6 THR A 13 TRP A 21 -1 O GLY A 16 N VAL A 4 SHEET 4 A 6 ARG A 272 SER A 280 -1 O PHE A 275 N LEU A 19 SHEET 5 A 6 THR A 285 THR A 290 -1 O TYR A 287 N GLY A 278 SHEET 6 A 6 ARG A 297 ALA A 300 -1 O TYR A 299 N TYR A 286 SHEET 1 B 8 GLY A 159 HIS A 164 0 SHEET 2 B 8 SER A 150 MET A 156 -1 N MET A 156 O GLY A 159 SHEET 3 B 8 LEU A 140 GLY A 145 -1 N ILE A 144 O ILE A 151 SHEET 4 B 8 ALA A 76 ASN A 81 -1 N LEU A 80 O HIS A 141 SHEET 5 B 8 ARG A 63 ASN A 71 -1 N PHE A 67 O GLY A 79 SHEET 6 B 8 VAL A 53 MET A 60 -1 N ILE A 54 O ALA A 70 SHEET 7 B 8 THR A 28 THR A 32 -1 N THR A 32 O VAL A 53 SHEET 8 B 8 ILE A 312 VAL A 314 -1 O ILE A 312 N VAL A 31 SHEET 1 C 2 GLU A 97 ALA A 100 0 SHEET 2 C 2 VAL A 125 VAL A 128 1 O VAL A 128 N VAL A 99 SHEET 1 D 2 THR A 197 TRP A 199 0 SHEET 2 D 2 ALA A 202 LEU A 204 -1 O LEU A 204 N THR A 197 SHEET 1 E 6 VAL B 169 LEU B 170 0 SHEET 2 E 6 THR B 2 SER B 7 -1 N GLY B 3 O LEU B 170 SHEET 3 E 6 THR B 13 TRP B 21 -1 O TYR B 14 N PHE B 6 SHEET 4 E 6 ARG B 272 SER B 280 -1 O TYR B 279 N PHE B 15 SHEET 5 E 6 THR B 285 THR B 290 -1 O TYR B 287 N GLY B 278 SHEET 6 E 6 ASP B 293 ALA B 300 -1 O ARG B 297 N MET B 288 SHEET 1 F 8 GLY B 159 HIS B 164 0 SHEET 2 F 8 SER B 150 MET B 156 -1 N MET B 156 O GLY B 159 SHEET 3 F 8 LEU B 140 GLY B 145 -1 N TRP B 142 O VAL B 153 SHEET 4 F 8 ALA B 76 ASN B 81 -1 N LEU B 80 O HIS B 141 SHEET 5 F 8 ARG B 63 ASN B 71 -1 N CYS B 69 O ILE B 77 SHEET 6 F 8 VAL B 53 MET B 60 -1 N ILE B 54 O ALA B 70 SHEET 7 F 8 THR B 28 THR B 32 -1 N THR B 32 O VAL B 53 SHEET 8 F 8 ILE B 312 SER B 313 -1 O ILE B 312 N VAL B 31 SHEET 1 G 2 GLU B 97 ALA B 100 0 SHEET 2 G 2 VAL B 125 VAL B 128 1 O THR B 126 N VAL B 99 SHEET 1 H 2 THR B 197 TRP B 199 0 SHEET 2 H 2 ALA B 202 LEU B 204 -1 O LEU B 204 N THR B 197 LINK C OCS A 1 N THR A 2 1555 1555 1.33 LINK C OCS B 1 N THR B 2 1555 1555 1.32 CISPEP 1 GLN A 173 PRO A 174 0 -4.79 CISPEP 2 ALA A 315 ARG A 316 0 1.48 CISPEP 3 GLN B 173 PRO B 174 0 -8.33 SITE 1 AC1 5 TYR A 186 HIS A 214 TYR B 186 HIS B 214 SITE 2 AC1 5 HOH B 406 CRYST1 125.243 125.243 117.028 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007984 0.004610 0.000000 0.00000 SCALE2 0.000000 0.009220 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008545 0.00000 HETATM 1 N OCS A 1 50.025 13.293 24.132 1.00 34.28 N HETATM 2 CA OCS A 1 49.129 13.555 22.940 1.00 36.97 C HETATM 3 CB OCS A 1 48.724 15.003 22.892 1.00 37.16 C HETATM 4 SG OCS A 1 48.421 15.569 24.562 1.00 48.28 S HETATM 5 C OCS A 1 49.796 13.325 21.632 1.00 36.21 C HETATM 6 O OCS A 1 51.005 13.511 21.480 1.00 35.65 O HETATM 7 OD1 OCS A 1 48.255 16.971 24.485 1.00 52.37 O HETATM 8 OD2 OCS A 1 47.223 14.866 24.944 1.00 44.94 O HETATM 9 OD3 OCS A 1 49.564 15.276 25.532 1.00 43.45 O