HEADER HYDROLASE 22-JUN-06 2HF2 TITLE DOMAIN SHIFTING CONFIRMS MONOMERIC STRUCTURE OF ESCHERICHIA SUGAR TITLE 2 PHOSPHATASE SUPH COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUGAR PHOSPHATASE SUPH; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.3.23; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: SUPH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS HAD FAMILY, PHOSPHATASE, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,U.RAMAGOPAL,S.C.ALMO,S.K.BURLEY,NEW YORK SGX RESEARCH AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 7 15-NOV-23 2HF2 1 REMARK REVDAT 6 30-AUG-23 2HF2 1 REMARK REVDAT 5 20-OCT-21 2HF2 1 SEQADV REVDAT 4 03-FEB-21 2HF2 1 AUTHOR SEQADV LINK REVDAT 3 13-JUL-11 2HF2 1 VERSN REVDAT 2 24-FEB-09 2HF2 1 VERSN REVDAT 1 18-JUL-06 2HF2 0 JRNL AUTH Y.PATSKOVSKY,U.RAMAGOPAL,S.C.ALMO JRNL TITL DOMAIN SHIFTING CONFIRMS MONOMERIC STRUCTURE OF ESCHERICHIA JRNL TITL 2 COLI SUGAR PHOSPHATASE SUPH JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 40958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1329 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2193 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.3880 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.5490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4248 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 398 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16000 REMARK 3 B22 (A**2) : 0.29000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.186 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.617 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4467 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6080 ; 1.410 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 578 ; 5.871 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 222 ;36.012 ;25.135 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 788 ;15.410 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;15.766 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 678 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3434 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2130 ; 0.161 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3089 ; 0.298 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 584 ; 0.278 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 72 ; 0.171 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.196 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2813 ; 3.868 ; 2.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4437 ; 4.862 ; 3.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1835 ; 6.573 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1621 ; 8.931 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 270 1 REMARK 3 1 B 1 B 270 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 2026 ; 0.05 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 2026 ; 0.38 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HF2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038274. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42397 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.32300 REMARK 200 R SYM FOR SHELL (I) : 0.35800 REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1RLM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG8000, 0.1 M SODIUM PHOSPHATE REMARK 280 -CITRATE, 10% GLYCEROL, PH 4.50, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 55.64750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -1 REMARK 465 SER A 0 REMARK 465 ASP A 99 REMARK 465 LYS A 100 REMARK 465 GLN A 101 REMARK 465 LEU A 102 REMARK 465 SER A 271 REMARK 465 GLU A 272 REMARK 465 GLY A 273 REMARK 465 GLY A 274 REMARK 465 SER A 275 REMARK 465 HIS A 276 REMARK 465 HIS A 277 REMARK 465 HIS A 278 REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 465 MSE B -1 REMARK 465 SER B 0 REMARK 465 SER B 271 REMARK 465 GLU B 272 REMARK 465 GLY B 273 REMARK 465 GLY B 274 REMARK 465 SER B 275 REMARK 465 HIS B 276 REMARK 465 HIS B 277 REMARK 465 HIS B 278 REMARK 465 HIS B 279 REMARK 465 HIS B 280 REMARK 465 HIS B 281 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE B 10 SE MSE B 10 CE -0.939 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 132 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 132 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 LEU A 153 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 PRO A 188 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG B 132 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 132 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 LEU B 153 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 10 -86.63 -97.86 REMARK 500 THR A 13 -87.47 -127.47 REMARK 500 LEU A 97 49.75 -79.32 REMARK 500 PRO A 119 129.05 -39.32 REMARK 500 SER A 178 -135.48 -117.39 REMARK 500 SER A 178 -135.12 -117.81 REMARK 500 ASP A 215 -31.29 -142.37 REMARK 500 TYR A 228 78.23 -101.64 REMARK 500 MSE B 10 -79.20 -103.47 REMARK 500 THR B 13 -88.22 -126.77 REMARK 500 PRO B 119 128.62 -38.78 REMARK 500 SER B 178 -133.54 -117.80 REMARK 500 SER B 178 -133.17 -118.21 REMARK 500 ASP B 215 -35.93 -150.92 REMARK 500 ASP B 215 -42.08 -148.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RLM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF YBIV FROM ESCHERICHIA COLI K12 REMARK 900 RELATED ID: 1RLO RELATED DB: PDB REMARK 900 PHOSPHO-ASPARTYL INTERMEDIATE ANALOGUE OF YBIV FROM E. COLI K12 REMARK 900 RELATED ID: 1RLT RELATED DB: PDB REMARK 900 TRANSITION STATE ANALOGUE OF YBIV FROM E. COLI K12 REMARK 900 RELATED ID: T791 RELATED DB: TARGETDB REMARK 900 RELATED ID: NYSGXRC-T791 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 MSE -1 IS A MODIFIED RESIDUE AND A CLONING ARTIFACT DBREF 2HF2 A 1 271 UNP P75792 SUPH_ECOLI 1 271 DBREF 2HF2 B 1 271 UNP P75792 SUPH_ECOLI 1 271 SEQADV 2HF2 MSE A -1 UNP P75792 SEE REMARK 999 SEQADV 2HF2 SER A 0 UNP P75792 CLONING ARTIFACT SEQADV 2HF2 LEU A 1 UNP P75792 MET 1 ENGINEERED MUTATION SEQADV 2HF2 MSE A 10 UNP P75792 MET 10 MODIFIED RESIDUE SEQADV 2HF2 MSE A 27 UNP P75792 MET 27 MODIFIED RESIDUE SEQADV 2HF2 ASN A 45 UNP P75792 GLY 45 ENGINEERED MUTATION SEQADV 2HF2 MSE A 126 UNP P75792 MET 126 MODIFIED RESIDUE SEQADV 2HF2 MSE A 173 UNP P75792 MET 173 MODIFIED RESIDUE SEQADV 2HF2 MSE A 222 UNP P75792 MET 222 MODIFIED RESIDUE SEQADV 2HF2 MSE A 225 UNP P75792 MET 225 MODIFIED RESIDUE SEQADV 2HF2 MSE A 232 UNP P75792 MET 232 MODIFIED RESIDUE SEQADV 2HF2 GLU A 272 UNP P75792 CLONING ARTIFACT SEQADV 2HF2 GLY A 273 UNP P75792 CLONING ARTIFACT SEQADV 2HF2 GLY A 274 UNP P75792 CLONING ARTIFACT SEQADV 2HF2 SER A 275 UNP P75792 CLONING ARTIFACT SEQADV 2HF2 HIS A 276 UNP P75792 EXPRESSION TAG SEQADV 2HF2 HIS A 277 UNP P75792 EXPRESSION TAG SEQADV 2HF2 HIS A 278 UNP P75792 EXPRESSION TAG SEQADV 2HF2 HIS A 279 UNP P75792 EXPRESSION TAG SEQADV 2HF2 HIS A 280 UNP P75792 EXPRESSION TAG SEQADV 2HF2 HIS A 281 UNP P75792 EXPRESSION TAG SEQADV 2HF2 MSE B -1 UNP P75792 SEE REMARK 999 SEQADV 2HF2 SER B 0 UNP P75792 CLONING ARTIFACT SEQADV 2HF2 LEU B 1 UNP P75792 MET 1 ENGINEERED MUTATION SEQADV 2HF2 MSE B 10 UNP P75792 MET 10 MODIFIED RESIDUE SEQADV 2HF2 MSE B 27 UNP P75792 MET 27 MODIFIED RESIDUE SEQADV 2HF2 ASN B 45 UNP P75792 GLY 45 ENGINEERED MUTATION SEQADV 2HF2 MSE B 126 UNP P75792 MET 126 MODIFIED RESIDUE SEQADV 2HF2 MSE B 173 UNP P75792 MET 173 MODIFIED RESIDUE SEQADV 2HF2 MSE B 222 UNP P75792 MET 222 MODIFIED RESIDUE SEQADV 2HF2 MSE B 225 UNP P75792 MET 225 MODIFIED RESIDUE SEQADV 2HF2 MSE B 232 UNP P75792 MET 232 MODIFIED RESIDUE SEQADV 2HF2 GLU B 272 UNP P75792 CLONING ARTIFACT SEQADV 2HF2 GLY B 273 UNP P75792 CLONING ARTIFACT SEQADV 2HF2 GLY B 274 UNP P75792 CLONING ARTIFACT SEQADV 2HF2 SER B 275 UNP P75792 CLONING ARTIFACT SEQADV 2HF2 HIS B 276 UNP P75792 EXPRESSION TAG SEQADV 2HF2 HIS B 277 UNP P75792 EXPRESSION TAG SEQADV 2HF2 HIS B 278 UNP P75792 EXPRESSION TAG SEQADV 2HF2 HIS B 279 UNP P75792 EXPRESSION TAG SEQADV 2HF2 HIS B 280 UNP P75792 EXPRESSION TAG SEQADV 2HF2 HIS B 281 UNP P75792 EXPRESSION TAG SEQRES 1 A 283 MSE SER LEU SER VAL LYS VAL ILE VAL THR ASP MSE ASP SEQRES 2 A 283 GLY THR PHE LEU ASN ASP ALA LYS THR TYR ASN GLN PRO SEQRES 3 A 283 ARG PHE MSE ALA GLN TYR GLN GLU LEU LYS LYS ARG GLY SEQRES 4 A 283 ILE LYS PHE VAL VAL ALA SER ASN ASN GLN TYR TYR GLN SEQRES 5 A 283 LEU ILE SER PHE PHE PRO GLU LEU LYS ASP GLU ILE SER SEQRES 6 A 283 PHE VAL ALA GLU ASN GLY ALA LEU VAL TYR GLU HIS GLY SEQRES 7 A 283 LYS GLN LEU PHE HIS GLY GLU LEU THR ARG HIS GLU SER SEQRES 8 A 283 ARG ILE VAL ILE GLY GLU LEU LEU LYS ASP LYS GLN LEU SEQRES 9 A 283 ASN PHE VAL ALA CYS GLY LEU GLN SER ALA TYR VAL SER SEQRES 10 A 283 GLU ASN ALA PRO GLU ALA PHE VAL ALA LEU MSE ALA LYS SEQRES 11 A 283 HIS TYR HIS ARG LEU LYS PRO VAL LYS ASP TYR GLN GLU SEQRES 12 A 283 ILE ASP ASP VAL LEU PHE LYS PHE SER LEU ASN LEU PRO SEQRES 13 A 283 ASP GLU GLN ILE PRO LEU VAL ILE ASP LYS LEU HIS VAL SEQRES 14 A 283 ALA LEU ASP GLY ILE MSE LYS PRO VAL THR SER GLY PHE SEQRES 15 A 283 GLY PHE ILE ASP LEU ILE ILE PRO GLY LEU HIS LYS ALA SEQRES 16 A 283 ASN GLY ILE SER ARG LEU LEU LYS ARG TRP ASP LEU SER SEQRES 17 A 283 PRO GLN ASN VAL VAL ALA ILE GLY ASP SER GLY ASN ASP SEQRES 18 A 283 ALA GLU MSE LEU LYS MSE ALA ARG TYR SER PHE ALA MSE SEQRES 19 A 283 GLY ASN ALA ALA GLU ASN ILE LYS GLN ILE ALA ARG TYR SEQRES 20 A 283 ALA THR ASP ASP ASN ASN HIS GLU GLY ALA LEU ASN VAL SEQRES 21 A 283 ILE GLN ALA VAL LEU ASP ASN THR SER PRO PHE ASN SER SEQRES 22 A 283 GLU GLY GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 283 MSE SER LEU SER VAL LYS VAL ILE VAL THR ASP MSE ASP SEQRES 2 B 283 GLY THR PHE LEU ASN ASP ALA LYS THR TYR ASN GLN PRO SEQRES 3 B 283 ARG PHE MSE ALA GLN TYR GLN GLU LEU LYS LYS ARG GLY SEQRES 4 B 283 ILE LYS PHE VAL VAL ALA SER ASN ASN GLN TYR TYR GLN SEQRES 5 B 283 LEU ILE SER PHE PHE PRO GLU LEU LYS ASP GLU ILE SER SEQRES 6 B 283 PHE VAL ALA GLU ASN GLY ALA LEU VAL TYR GLU HIS GLY SEQRES 7 B 283 LYS GLN LEU PHE HIS GLY GLU LEU THR ARG HIS GLU SER SEQRES 8 B 283 ARG ILE VAL ILE GLY GLU LEU LEU LYS ASP LYS GLN LEU SEQRES 9 B 283 ASN PHE VAL ALA CYS GLY LEU GLN SER ALA TYR VAL SER SEQRES 10 B 283 GLU ASN ALA PRO GLU ALA PHE VAL ALA LEU MSE ALA LYS SEQRES 11 B 283 HIS TYR HIS ARG LEU LYS PRO VAL LYS ASP TYR GLN GLU SEQRES 12 B 283 ILE ASP ASP VAL LEU PHE LYS PHE SER LEU ASN LEU PRO SEQRES 13 B 283 ASP GLU GLN ILE PRO LEU VAL ILE ASP LYS LEU HIS VAL SEQRES 14 B 283 ALA LEU ASP GLY ILE MSE LYS PRO VAL THR SER GLY PHE SEQRES 15 B 283 GLY PHE ILE ASP LEU ILE ILE PRO GLY LEU HIS LYS ALA SEQRES 16 B 283 ASN GLY ILE SER ARG LEU LEU LYS ARG TRP ASP LEU SER SEQRES 17 B 283 PRO GLN ASN VAL VAL ALA ILE GLY ASP SER GLY ASN ASP SEQRES 18 B 283 ALA GLU MSE LEU LYS MSE ALA ARG TYR SER PHE ALA MSE SEQRES 19 B 283 GLY ASN ALA ALA GLU ASN ILE LYS GLN ILE ALA ARG TYR SEQRES 20 B 283 ALA THR ASP ASP ASN ASN HIS GLU GLY ALA LEU ASN VAL SEQRES 21 B 283 ILE GLN ALA VAL LEU ASP ASN THR SER PRO PHE ASN SER SEQRES 22 B 283 GLU GLY GLY SER HIS HIS HIS HIS HIS HIS MODRES 2HF2 MSE A 10 MET SELENOMETHIONINE MODRES 2HF2 MSE A 27 MET SELENOMETHIONINE MODRES 2HF2 MSE A 126 MET SELENOMETHIONINE MODRES 2HF2 MSE A 173 MET SELENOMETHIONINE MODRES 2HF2 MSE A 222 MET SELENOMETHIONINE MODRES 2HF2 MSE A 225 MET SELENOMETHIONINE MODRES 2HF2 MSE A 232 MET SELENOMETHIONINE MODRES 2HF2 MSE B 10 MET SELENOMETHIONINE MODRES 2HF2 MSE B 27 MET SELENOMETHIONINE MODRES 2HF2 MSE B 126 MET SELENOMETHIONINE MODRES 2HF2 MSE B 173 MET SELENOMETHIONINE MODRES 2HF2 MSE B 222 MET SELENOMETHIONINE MODRES 2HF2 MSE B 225 MET SELENOMETHIONINE MODRES 2HF2 MSE B 232 MET SELENOMETHIONINE HET MSE A 10 8 HET MSE A 27 8 HET MSE A 126 8 HET MSE A 173 8 HET MSE A 222 8 HET MSE A 225 8 HET MSE A 232 8 HET MSE B 10 8 HET MSE B 27 8 HET MSE B 126 8 HET MSE B 173 8 HET MSE B 222 8 HET MSE B 225 8 HET MSE B 232 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 HOH *398(H2 O) HELIX 1 1 ASN A 22 ARG A 36 1 15 HELIX 2 2 GLN A 47 SER A 53 1 7 HELIX 3 3 GLU A 67 GLY A 69 5 3 HELIX 4 4 THR A 85 LEU A 97 1 13 HELIX 5 5 PRO A 119 ALA A 127 1 9 HELIX 6 6 PRO A 154 GLU A 156 5 3 HELIX 7 7 GLN A 157 LEU A 169 1 13 HELIX 8 8 HIS A 191 TRP A 203 1 13 HELIX 9 9 SER A 206 GLN A 208 5 3 HELIX 10 10 SER A 216 ASN A 218 5 3 HELIX 11 11 ASP A 219 ALA A 226 1 8 HELIX 12 12 ALA A 236 ALA A 243 1 8 HELIX 13 13 GLU A 253 ASN A 265 1 13 HELIX 14 14 ASN B 22 ARG B 36 1 15 HELIX 15 15 GLN B 47 SER B 53 1 7 HELIX 16 16 GLU B 67 GLY B 69 5 3 HELIX 17 17 THR B 85 LEU B 97 1 13 HELIX 18 18 PRO B 119 ALA B 127 1 9 HELIX 19 19 PRO B 154 GLU B 156 5 3 HELIX 20 20 GLN B 157 LEU B 169 1 13 HELIX 21 21 HIS B 191 TRP B 203 1 13 HELIX 22 22 SER B 206 GLN B 208 5 3 HELIX 23 23 SER B 216 ASN B 218 5 3 HELIX 24 24 ASP B 219 ALA B 226 1 8 HELIX 25 25 ALA B 236 ALA B 243 1 8 HELIX 26 26 GLU B 253 ASN B 265 1 13 SHEET 1 A 8 LYS A 77 HIS A 81 0 SHEET 2 A 8 LEU A 71 GLU A 74 -1 N VAL A 72 O LEU A 79 SHEET 3 A 8 SER A 63 ALA A 66 -1 N ALA A 66 O LEU A 71 SHEET 4 A 8 LYS A 39 ALA A 43 1 N VAL A 42 O VAL A 65 SHEET 5 A 8 VAL A 5 THR A 8 1 N ILE A 6 O VAL A 41 SHEET 6 A 8 VAL A 210 GLY A 214 1 O VAL A 211 N VAL A 7 SHEET 7 A 8 TYR A 228 ALA A 231 1 O PHE A 230 N ALA A 212 SHEET 8 A 8 TYR A 245 ALA A 246 1 O TYR A 245 N ALA A 231 SHEET 1 B 6 LEU A 133 VAL A 136 0 SHEET 2 B 6 ALA A 112 SER A 115 1 N ALA A 112 O LYS A 134 SHEET 3 B 6 PHE A 104 GLY A 108 -1 N ALA A 106 O TYR A 113 SHEET 4 B 6 LEU A 146 ASN A 152 -1 O LYS A 148 N CYS A 107 SHEET 5 B 6 PHE A 182 ILE A 186 -1 O ILE A 183 N LEU A 151 SHEET 6 B 6 LYS A 174 THR A 177 -1 N VAL A 176 O ASP A 184 SHEET 1 C 8 LYS B 77 HIS B 81 0 SHEET 2 C 8 LEU B 71 GLU B 74 -1 N VAL B 72 O LEU B 79 SHEET 3 C 8 SER B 63 ALA B 66 -1 N ALA B 66 O LEU B 71 SHEET 4 C 8 LYS B 39 ALA B 43 1 N VAL B 42 O VAL B 65 SHEET 5 C 8 VAL B 5 THR B 8 1 N THR B 8 O ALA B 43 SHEET 6 C 8 VAL B 210 GLY B 214 1 O VAL B 211 N VAL B 7 SHEET 7 C 8 TYR B 228 ALA B 231 1 O PHE B 230 N ALA B 212 SHEET 8 C 8 TYR B 245 ALA B 246 1 O TYR B 245 N SER B 229 SHEET 1 D 6 LEU B 133 VAL B 136 0 SHEET 2 D 6 ALA B 112 SER B 115 1 N ALA B 112 O LYS B 134 SHEET 3 D 6 ASN B 103 GLY B 108 -1 N ALA B 106 O TYR B 113 SHEET 4 D 6 LEU B 146 ASN B 152 -1 O LYS B 148 N CYS B 107 SHEET 5 D 6 PHE B 182 ILE B 186 -1 O ILE B 183 N LEU B 151 SHEET 6 D 6 LYS B 174 THR B 177 -1 N VAL B 176 O ASP B 184 LINK C ASP A 9 N MSE A 10 1555 1555 1.33 LINK C MSE A 10 N ASP A 11 1555 1555 1.33 LINK C PHE A 26 N MSE A 27 1555 1555 1.33 LINK C MSE A 27 N ALA A 28 1555 1555 1.33 LINK C LEU A 125 N MSE A 126 1555 1555 1.33 LINK C MSE A 126 N ALA A 127 1555 1555 1.33 LINK C ILE A 172 N MSE A 173 1555 1555 1.33 LINK C MSE A 173 N LYS A 174 1555 1555 1.33 LINK C GLU A 221 N MSE A 222 1555 1555 1.33 LINK C MSE A 222 N LEU A 223 1555 1555 1.33 LINK C LYS A 224 N MSE A 225 1555 1555 1.32 LINK C MSE A 225 N ALA A 226 1555 1555 1.32 LINK C ALA A 231 N MSE A 232 1555 1555 1.33 LINK C MSE A 232 N GLY A 233 1555 1555 1.34 LINK C ASP B 9 N MSE B 10 1555 1555 1.33 LINK C MSE B 10 N ASP B 11 1555 1555 1.33 LINK C PHE B 26 N MSE B 27 1555 1555 1.33 LINK C MSE B 27 N ALA B 28 1555 1555 1.33 LINK C LEU B 125 N MSE B 126 1555 1555 1.33 LINK C MSE B 126 N ALA B 127 1555 1555 1.33 LINK C ILE B 172 N MSE B 173 1555 1555 1.33 LINK C MSE B 173 N LYS B 174 1555 1555 1.33 LINK C GLU B 221 N MSE B 222 1555 1555 1.33 LINK C MSE B 222 N LEU B 223 1555 1555 1.33 LINK C LYS B 224 N MSE B 225 1555 1555 1.33 LINK C MSE B 225 N ALA B 226 1555 1555 1.33 LINK C ALA B 231 N MSE B 232 1555 1555 1.33 LINK C MSE B 232 N GLY B 233 1555 1555 1.34 CISPEP 1 SER A 267 PRO A 268 0 4.15 CISPEP 2 SER B 267 PRO B 268 0 4.72 CRYST1 38.774 111.295 68.802 90.00 106.23 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025790 0.000000 0.007507 0.00000 SCALE2 0.000000 0.008985 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015138 0.00000