HEADER HYDROLASE, METAL BINDING PROTEIN 23-JUN-06 2HF8 TITLE CRYSTAL STRUCTURE OF HYPB FROM METHANOCALDOCOCCUS TITLE 2 JANNASCHII IN THE TRIPHOSPHATE FORM, IN COMPLEX WITH ZINC COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE HYDROGENASE NICKEL INCORPORATION COMPND 3 PROTEIN HYPB; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: HYPB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX4T3 KEYWDS ALPHA AND BETA PROTEIN, P-LOOP CONTAINING NUCLEOSIDE KEYWDS 2 TRIPHOSPHATE HYDROLASE, HYDROLASE, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.GASPER,A.SCRIMA,A.WITTINGHOFER REVDAT 3 24-FEB-09 2HF8 1 VERSN REVDAT 2 10-OCT-06 2HF8 1 JRNL REVDAT 1 04-JUL-06 2HF8 0 JRNL AUTH R.GASPER,A.SCRIMA,A.WITTINGHOFER JRNL TITL STRUCTURAL INSIGHTS INTO HYPB, A GTP-BINDING JRNL TITL 2 PROTEIN THAT REGULATES METAL BINDING. JRNL REF J.BIOL.CHEM. V. 281 27492 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16807243 JRNL DOI 10.1074/JBC.M600809200 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1410 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1850 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.2240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3246 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.33000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.226 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.579 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3350 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4518 ; 1.090 ; 2.011 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 418 ; 5.330 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;33.660 ;26.324 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 662 ;13.260 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;13.626 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 536 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2360 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1440 ; 0.185 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2280 ; 0.290 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 200 ; 0.115 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.120 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.187 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.070 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.232 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2160 ; 0.528 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3346 ; 0.835 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1331 ; 1.223 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1172 ; 1.969 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2HF8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-06. REMARK 100 THE RCSB ID CODE IS RCSB038280. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51141 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.760 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.94 REMARK 200 R MERGE FOR SHELL (I) : 0.08400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 175 MM MALEIC ACID DISODIUM SALT, REMARK 280 52.5 MM HCL, 14% PEG3350, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.56000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.99500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.06500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.99500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.56000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.06500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS COMPOSED OF CHAIN A AND B REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 ALA A -3 REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 LEU A 3 REMARK 465 VAL A 4 REMARK 465 GLY A 5 REMARK 465 VAL A 6 REMARK 465 LEU A 7 REMARK 465 ASP A 8 REMARK 465 ILE A 9 REMARK 465 ALA A 10 REMARK 465 GLY B -4 REMARK 465 ALA B -3 REMARK 465 MET B -2 REMARK 465 GLY B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 HIS B 2 REMARK 465 LEU B 3 REMARK 465 VAL B 4 REMARK 465 GLY B 5 REMARK 465 VAL B 6 REMARK 465 LEU B 7 REMARK 465 ASP B 8 REMARK 465 ILE B 9 REMARK 465 ALA B 10 REMARK 465 LYS B 11 REMARK 465 LYS B 221 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 69 O HOH A 467 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 124 122.85 -179.57 REMARK 500 ILE A 126 -75.73 -118.01 REMARK 500 ASN B 124 125.36 -179.66 REMARK 500 ILE B 126 -84.62 -106.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GSP A 300 O3G REMARK 620 2 THR A 47 OG1 176.4 REMARK 620 3 ASP A 75 OD2 96.9 85.1 REMARK 620 4 HOH A 468 O 92.1 85.1 84.8 REMARK 620 5 GLU A 120 OE2 92.0 90.8 95.6 175.8 REMARK 620 6 GSP A 300 O2B 90.0 87.5 167.5 84.6 94.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 95 SG REMARK 620 2 CYS A 127 SG 102.7 REMARK 620 3 CYS B 95 SG 117.6 107.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 100 NE2 REMARK 620 2 HIS A 104 NE2 109.1 REMARK 620 3 HIS B 104 NE2 100.5 114.0 REMARK 620 4 HIS B 100 NE2 104.5 125.6 100.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GSP B 300 O3G REMARK 620 2 THR B 47 OG1 177.7 REMARK 620 3 HOH B 437 O 92.3 87.8 REMARK 620 4 GSP B 300 O2B 90.9 86.9 81.2 REMARK 620 5 GLU B 120 OE2 91.9 87.8 173.9 94.4 REMARK 620 6 ASP B 75 OD2 92.8 89.4 95.6 175.1 88.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 95 SG REMARK 620 2 HOH B 462 O 91.3 REMARK 620 3 HIS B 96 ND1 128.3 105.0 REMARK 620 4 CYS B 127 SG 113.7 103.6 109.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 104 NE2 REMARK 620 2 HIS B 100 NE2 98.8 REMARK 620 3 HIS A 104 NE2 96.0 102.4 REMARK 620 4 HIS A 100 NE2 121.5 124.1 109.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 301 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 402 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 404 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSP A 300 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSP B 300 DBREF 2HF8 A 1 221 UNP Q57884 HYPB_METJA 1 221 DBREF 2HF8 B 1 221 UNP Q57884 HYPB_METJA 1 221 SEQADV 2HF8 GLY A -4 UNP Q57884 CLONING ARTIFACT SEQADV 2HF8 ALA A -3 UNP Q57884 CLONING ARTIFACT SEQADV 2HF8 MET A -2 UNP Q57884 CLONING ARTIFACT SEQADV 2HF8 GLY A -1 UNP Q57884 CLONING ARTIFACT SEQADV 2HF8 GLY A 0 UNP Q57884 CLONING ARTIFACT SEQADV 2HF8 MSE A 39 UNP Q57884 MET 39 MODIFIED RESIDUE SEQADV 2HF8 MSE A 79 UNP Q57884 MET 79 MODIFIED RESIDUE SEQADV 2HF8 MSE A 158 UNP Q57884 MET 158 MODIFIED RESIDUE SEQADV 2HF8 MSE A 182 UNP Q57884 MET 182 MODIFIED RESIDUE SEQADV 2HF8 MSE A 203 UNP Q57884 MET 203 MODIFIED RESIDUE SEQADV 2HF8 GLY B -4 UNP Q57884 CLONING ARTIFACT SEQADV 2HF8 ALA B -3 UNP Q57884 CLONING ARTIFACT SEQADV 2HF8 MET B -2 UNP Q57884 CLONING ARTIFACT SEQADV 2HF8 GLY B -1 UNP Q57884 CLONING ARTIFACT SEQADV 2HF8 GLY B 0 UNP Q57884 CLONING ARTIFACT SEQADV 2HF8 MSE B 39 UNP Q57884 MET 39 MODIFIED RESIDUE SEQADV 2HF8 MSE B 79 UNP Q57884 MET 79 MODIFIED RESIDUE SEQADV 2HF8 MSE B 158 UNP Q57884 MET 158 MODIFIED RESIDUE SEQADV 2HF8 MSE B 182 UNP Q57884 MET 182 MODIFIED RESIDUE SEQADV 2HF8 MSE B 203 UNP Q57884 MET 203 MODIFIED RESIDUE SEQRES 1 A 226 GLY ALA MET GLY GLY MET HIS LEU VAL GLY VAL LEU ASP SEQRES 2 A 226 ILE ALA LYS ASP ILE LEU LYS ALA ASN LYS ARG LEU ALA SEQRES 3 A 226 ASP LYS ASN ARG LYS LEU LEU ASN LYS HIS GLY VAL VAL SEQRES 4 A 226 ALA PHE ASP PHE MSE GLY ALA ILE GLY SER GLY LYS THR SEQRES 5 A 226 LEU LEU ILE GLU LYS LEU ILE ASP ASN LEU LYS ASP LYS SEQRES 6 A 226 TYR LYS ILE ALA CYS ILE ALA GLY ASP VAL ILE ALA LYS SEQRES 7 A 226 PHE ASP ALA GLU ARG MSE GLU LYS HIS GLY ALA LYS VAL SEQRES 8 A 226 VAL PRO LEU ASN THR GLY LYS GLU CYS HIS LEU ASP ALA SEQRES 9 A 226 HIS LEU VAL GLY HIS ALA LEU GLU ASP LEU ASN LEU ASP SEQRES 10 A 226 GLU ILE ASP LEU LEU PHE ILE GLU ASN VAL GLY ASN LEU SEQRES 11 A 226 ILE CYS PRO ALA ASP PHE ASP LEU GLY THR HIS LYS ARG SEQRES 12 A 226 ILE VAL VAL ILE SER THR THR GLU GLY ASP ASP THR ILE SEQRES 13 A 226 GLU LYS HIS PRO GLY ILE MSE LYS THR ALA ASP LEU ILE SEQRES 14 A 226 VAL ILE ASN LYS ILE ASP LEU ALA ASP ALA VAL GLY ALA SEQRES 15 A 226 ASP ILE LYS LYS MSE GLU ASN ASP ALA LYS ARG ILE ASN SEQRES 16 A 226 PRO ASP ALA GLU VAL VAL LEU LEU SER LEU LYS THR MSE SEQRES 17 A 226 GLU GLY PHE ASP LYS VAL LEU GLU PHE ILE GLU LYS SER SEQRES 18 A 226 VAL LYS GLU VAL LYS SEQRES 1 B 226 GLY ALA MET GLY GLY MET HIS LEU VAL GLY VAL LEU ASP SEQRES 2 B 226 ILE ALA LYS ASP ILE LEU LYS ALA ASN LYS ARG LEU ALA SEQRES 3 B 226 ASP LYS ASN ARG LYS LEU LEU ASN LYS HIS GLY VAL VAL SEQRES 4 B 226 ALA PHE ASP PHE MSE GLY ALA ILE GLY SER GLY LYS THR SEQRES 5 B 226 LEU LEU ILE GLU LYS LEU ILE ASP ASN LEU LYS ASP LYS SEQRES 6 B 226 TYR LYS ILE ALA CYS ILE ALA GLY ASP VAL ILE ALA LYS SEQRES 7 B 226 PHE ASP ALA GLU ARG MSE GLU LYS HIS GLY ALA LYS VAL SEQRES 8 B 226 VAL PRO LEU ASN THR GLY LYS GLU CYS HIS LEU ASP ALA SEQRES 9 B 226 HIS LEU VAL GLY HIS ALA LEU GLU ASP LEU ASN LEU ASP SEQRES 10 B 226 GLU ILE ASP LEU LEU PHE ILE GLU ASN VAL GLY ASN LEU SEQRES 11 B 226 ILE CYS PRO ALA ASP PHE ASP LEU GLY THR HIS LYS ARG SEQRES 12 B 226 ILE VAL VAL ILE SER THR THR GLU GLY ASP ASP THR ILE SEQRES 13 B 226 GLU LYS HIS PRO GLY ILE MSE LYS THR ALA ASP LEU ILE SEQRES 14 B 226 VAL ILE ASN LYS ILE ASP LEU ALA ASP ALA VAL GLY ALA SEQRES 15 B 226 ASP ILE LYS LYS MSE GLU ASN ASP ALA LYS ARG ILE ASN SEQRES 16 B 226 PRO ASP ALA GLU VAL VAL LEU LEU SER LEU LYS THR MSE SEQRES 17 B 226 GLU GLY PHE ASP LYS VAL LEU GLU PHE ILE GLU LYS SER SEQRES 18 B 226 VAL LYS GLU VAL LYS MODRES 2HF8 MSE A 39 MET SELENOMETHIONINE MODRES 2HF8 MSE A 79 MET SELENOMETHIONINE MODRES 2HF8 MSE A 158 MET SELENOMETHIONINE MODRES 2HF8 MSE A 182 MET SELENOMETHIONINE MODRES 2HF8 MSE A 203 MET SELENOMETHIONINE MODRES 2HF8 MSE B 39 MET SELENOMETHIONINE MODRES 2HF8 MSE B 79 MET SELENOMETHIONINE MODRES 2HF8 MSE B 158 MET SELENOMETHIONINE MODRES 2HF8 MSE B 182 MET SELENOMETHIONINE MODRES 2HF8 MSE B 203 MET SELENOMETHIONINE HET MSE A 39 8 HET MSE A 79 8 HET MSE A 158 8 HET MSE A 182 8 HET MSE A 203 8 HET MSE B 39 8 HET MSE B 79 8 HET MSE B 158 8 HET MSE B 182 8 HET MSE B 203 8 HET MG A 301 1 HET MG B 301 1 HET ZN A 401 1 HET ZN B 402 1 HET ZN A 403 1 HET ZN B 404 1 HET GSP A 300 32 HET GSP B 300 32 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION HETNAM GSP 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 MG 2(MG 2+) FORMUL 5 ZN 4(ZN 2+) FORMUL 9 GSP 2(C10 H16 N5 O13 P3 S) FORMUL 11 HOH *128(H2 O) HELIX 1 1 ASP A 12 HIS A 31 1 20 HELIX 2 2 GLY A 45 LYS A 58 1 14 HELIX 3 3 ALA A 72 LYS A 81 1 10 HELIX 4 4 ASP A 98 GLU A 107 1 10 HELIX 5 5 ASP A 108 LEU A 109 5 2 HELIX 6 6 ASN A 110 ILE A 114 5 5 HELIX 7 7 ILE A 126 PHE A 131 5 6 HELIX 8 8 THR A 145 GLY A 147 5 3 HELIX 9 9 ASP A 149 HIS A 154 1 6 HELIX 10 10 HIS A 154 LYS A 159 1 6 HELIX 11 11 LYS A 168 ASP A 170 5 3 HELIX 12 12 LEU A 171 GLY A 176 1 6 HELIX 13 13 ASP A 178 ASN A 190 1 13 HELIX 14 14 GLY A 205 VAL A 220 1 16 HELIX 15 15 ASP B 12 HIS B 31 1 20 HELIX 16 16 GLY B 45 LYS B 58 1 14 HELIX 17 17 ALA B 72 LYS B 81 1 10 HELIX 18 18 ASP B 98 ASP B 108 1 11 HELIX 19 19 LEU B 109 ILE B 114 5 6 HELIX 20 20 ILE B 126 PHE B 131 5 6 HELIX 21 21 THR B 145 GLY B 147 5 3 HELIX 22 22 HIS B 154 ALA B 161 1 8 HELIX 23 23 LYS B 168 ASP B 170 5 3 HELIX 24 24 LEU B 171 GLY B 176 1 6 HELIX 25 25 ASP B 178 ASN B 190 1 13 HELIX 26 26 GLY B 205 GLU B 219 1 15 SHEET 1 A 7 LYS A 85 ASN A 90 0 SHEET 2 A 7 ILE A 63 ASP A 69 1 N ALA A 67 O LEU A 89 SHEET 3 A 7 LEU A 116 GLU A 120 1 O GLU A 120 N ILE A 66 SHEET 4 A 7 VAL A 34 GLY A 40 1 N PHE A 38 O ILE A 119 SHEET 5 A 7 LYS A 137 SER A 143 1 O ILE A 139 N MSE A 39 SHEET 6 A 7 LEU A 163 ASN A 167 1 O ASN A 167 N ILE A 142 SHEET 7 A 7 GLU A 194 LEU A 197 1 O GLU A 194 N ILE A 164 SHEET 1 B 7 LYS B 85 ASN B 90 0 SHEET 2 B 7 ILE B 63 ASP B 69 1 N ALA B 67 O LEU B 89 SHEET 3 B 7 LEU B 116 GLU B 120 1 O GLU B 120 N ILE B 66 SHEET 4 B 7 VAL B 34 GLY B 40 1 N PHE B 38 O ILE B 119 SHEET 5 B 7 LYS B 137 SER B 143 1 O ILE B 139 N MSE B 39 SHEET 6 B 7 LEU B 163 ASN B 167 1 O ASN B 167 N ILE B 142 SHEET 7 B 7 GLU B 194 LEU B 197 1 O GLU B 194 N ILE B 164 LINK C PHE A 38 N MSE A 39 1555 1555 1.33 LINK C MSE A 39 N GLY A 40 1555 1555 1.33 LINK C ARG A 78 N MSE A 79 1555 1555 1.33 LINK C MSE A 79 N GLU A 80 1555 1555 1.33 LINK C ILE A 157 N MSE A 158 1555 1555 1.33 LINK C MSE A 158 N LYS A 159 1555 1555 1.33 LINK C LYS A 181 N MSE A 182 1555 1555 1.33 LINK C MSE A 182 N GLU A 183 1555 1555 1.33 LINK C THR A 202 N MSE A 203 1555 1555 1.33 LINK C MSE A 203 N GLU A 204 1555 1555 1.33 LINK O3G GSP A 300 MG MG A 301 1555 1555 1.93 LINK MG MG A 301 OG1 THR A 47 1555 1555 2.01 LINK MG MG A 301 OD2 ASP A 75 1555 1555 2.00 LINK MG MG A 301 O HOH A 468 1555 1555 2.05 LINK MG MG A 301 OE2 GLU A 120 1555 1555 2.09 LINK MG MG A 301 O2B GSP A 300 1555 1555 2.12 LINK ZN ZN A 401 SG CYS A 95 1555 1555 2.38 LINK ZN ZN A 401 SG CYS A 127 1555 1555 2.19 LINK ZN ZN A 401 SG CYS B 95 1555 1555 2.20 LINK ZN ZN A 403 NE2 HIS A 100 1555 1555 2.34 LINK ZN ZN A 403 NE2 HIS A 104 1555 1555 1.83 LINK C PHE B 38 N MSE B 39 1555 1555 1.33 LINK C MSE B 39 N GLY B 40 1555 1555 1.33 LINK C ARG B 78 N MSE B 79 1555 1555 1.33 LINK C MSE B 79 N GLU B 80 1555 1555 1.33 LINK C ILE B 157 N MSE B 158 1555 1555 1.33 LINK C MSE B 158 N LYS B 159 1555 1555 1.33 LINK C LYS B 181 N MSE B 182 1555 1555 1.33 LINK C MSE B 182 N GLU B 183 1555 1555 1.33 LINK C THR B 202 N MSE B 203 1555 1555 1.34 LINK C MSE B 203 N GLU B 204 1555 1555 1.33 LINK O3G GSP B 300 MG MG B 301 1555 1555 1.97 LINK MG MG B 301 OG1 THR B 47 1555 1555 2.07 LINK MG MG B 301 O HOH B 437 1555 1555 2.23 LINK MG MG B 301 O2B GSP B 300 1555 1555 2.10 LINK MG MG B 301 OE2 GLU B 120 1555 1555 2.14 LINK MG MG B 301 OD2 ASP B 75 1555 1555 2.15 LINK ZN ZN B 402 SG CYS B 95 1555 1555 2.10 LINK ZN ZN B 402 O HOH B 462 1555 1555 2.22 LINK ZN ZN B 402 ND1 HIS B 96 1555 1555 2.20 LINK ZN ZN B 402 SG CYS B 127 1555 1555 2.33 LINK ZN ZN B 404 NE2 HIS B 104 1555 1555 2.05 LINK ZN ZN B 404 NE2 HIS B 100 1555 1555 2.13 LINK ZN ZN A 403 NE2 HIS B 104 1555 4455 2.06 LINK ZN ZN A 403 NE2 HIS B 100 1555 4455 2.09 LINK ZN ZN B 404 NE2 HIS A 104 1555 4555 2.34 LINK ZN ZN B 404 NE2 HIS A 100 1555 4555 1.83 SITE 1 AC1 5 THR A 47 ASP A 75 GLU A 120 GSP A 300 SITE 2 AC1 5 HOH A 468 SITE 1 AC2 5 THR B 47 ASP B 75 GLU B 120 GSP B 300 SITE 2 AC2 5 HOH B 437 SITE 1 AC3 4 CYS A 95 CYS A 127 CYS B 95 ZN B 402 SITE 1 AC4 5 ZN A 401 CYS B 95 HIS B 96 CYS B 127 SITE 2 AC4 5 HOH B 462 SITE 1 AC5 4 HIS A 100 HIS A 104 HIS B 100 HIS B 104 SITE 1 AC6 4 HIS A 100 HIS A 104 HIS B 100 HIS B 104 SITE 1 AC7 25 GLY A 43 SER A 44 GLY A 45 LYS A 46 SITE 2 AC7 25 THR A 47 LEU A 48 ASP A 75 ARG A 78 SITE 3 AC7 25 GLU A 120 ASN A 167 LYS A 168 ASP A 170 SITE 4 AC7 25 SER A 199 LEU A 200 LYS A 201 MG A 301 SITE 5 AC7 25 HOH A 416 HOH A 458 HOH A 464 HOH A 465 SITE 6 AC7 25 HOH A 468 GLU B 146 LYS B 153 ALA B 174 SITE 7 AC7 25 VAL B 175 SITE 1 AC8 26 GLU A 146 LYS A 153 ALA A 174 VAL A 175 SITE 2 AC8 26 ILE B 42 GLY B 43 SER B 44 GLY B 45 SITE 3 AC8 26 LYS B 46 THR B 47 LEU B 48 ASP B 75 SITE 4 AC8 26 ARG B 78 GLU B 120 ASN B 167 LYS B 168 SITE 5 AC8 26 ASP B 170 LEU B 171 SER B 199 LEU B 200 SITE 6 AC8 26 LYS B 201 MG B 301 HOH B 422 HOH B 437 SITE 7 AC8 26 HOH B 453 HOH B 463 CRYST1 43.120 68.130 155.990 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023191 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014678 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006411 0.00000