HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 23-JUN-06 2HFD TITLE NMR STRUCTURE OF PROTEIN HYDROGENASE-1 OPERON PROTEIN HYAE FROM TITLE 2 ESCHERICHIA COLI: NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TITLE 3 ER415 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROGENASE-1 OPERON PROTEIN HYAE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: XL-10; SOURCE 5 GENE: HYAE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS PROTEIN STRUCTURE, NESGC, ALFA-BETA, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.K.SINGARAPU,G.LIU,A.ELETSKY,D.PARISH,H.S.ATREYA,D.XU,H.JANJUA, AUTHOR 2 K.CUNNINGHAM,L.C.MA,R.XIAO,J.LIU,M.BARAN,G.V.T.SWAPNA,T.ACTON, AUTHOR 3 B.ROST,G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS AUTHOR 4 CONSORTIUM (NESG) REVDAT 6 01-MAY-24 2HFD 1 REMARK SEQADV REVDAT 5 31-JAN-18 2HFD 1 AUTHOR REMARK REVDAT 4 09-JUN-09 2HFD 1 REVDAT REVDAT 3 24-FEB-09 2HFD 1 VERSN REVDAT 2 20-JAN-09 2HFD 1 JRNL REVDAT 1 22-AUG-06 2HFD 0 JRNL AUTH D.PARISH,J.BENACH,G.LIU,K.K.SINGARAPU,R.XIAO,T.ACTON,M.SU, JRNL AUTH 2 S.BANSAL,J.H.PRESTEGARD,J.HUNT,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL PROTEIN CHAPERONES Q8ZP25_SALTY FROM SALMONELLA TYPHIMURIUM JRNL TITL 2 AND HYAE_ECOLI FROM ESCHERICHIA COLI EXHIBIT JRNL TITL 3 THIOREDOXIN-LIKE STRUCTURES DESPITE LACK OF CANONICAL JRNL TITL 4 THIOREDOXIN ACTIVE SITE SEQUENCE MOTIF. JRNL REF J.STRUCT.FUNCT.GENOM. V. 9 41 2008 JRNL REFN ISSN 1345-711X JRNL PMID 19039680 JRNL DOI 10.1007/S10969-008-9050-Y REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2004.061.12.44, CYANA 2.1, CNS 1.1 REMARK 3 AUTHORS : DELAGLIO ET AL (NMRPIPE), GUNTERT ET AL (CYANA), REMARK 3 BRUNGER ET AL (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 1996 RESTRAINTS, 1523 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 473 REMARK 3 DIHEDRAL ANGLE RESTRAINTS, REMARK 4 REMARK 4 2HFD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038285. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6MM PROTEIN HYDROGENASE-1 REMARK 210 OPERON PROTEIN HYAE; 0.02% NAN3, REMARK 210 100MM DTT, 5MM CACL2, 100MM NACL, REMARK 210 20MM MES, 95% H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-COSY; 3D_13C- REMARK 210 SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_NOESY; 3D ARO NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA 1.5, AUTOSTRUCTURE 2.0.0, REMARK 210 CYANA 1.5 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 LEU A 133 REMARK 465 GLU A 134 REMARK 465 HIS A 135 REMARK 465 HIS A 136 REMARK 465 HIS A 137 REMARK 465 HIS A 138 REMARK 465 HIS A 139 REMARK 465 HIS A 140 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 3 72.81 67.65 REMARK 500 1 THR A 5 -57.72 -159.28 REMARK 500 1 SER A 43 -73.92 -95.13 REMARK 500 1 ARG A 47 -58.65 -175.74 REMARK 500 1 THR A 48 141.76 66.45 REMARK 500 1 GLU A 50 -97.27 -110.18 REMARK 500 1 VAL A 51 -69.59 -139.32 REMARK 500 1 ASP A 53 -22.26 72.42 REMARK 500 1 ASN A 54 99.54 83.05 REMARK 500 1 PHE A 65 78.85 -116.81 REMARK 500 1 ARG A 91 -31.33 -179.61 REMARK 500 1 ALA A 94 -175.73 -171.24 REMARK 500 1 ILE A 110 -56.82 -136.53 REMARK 500 1 GLN A 127 -41.48 71.29 REMARK 500 1 GLU A 129 121.60 76.42 REMARK 500 1 ARG A 130 36.27 -149.31 REMARK 500 2 SER A 2 89.58 -67.15 REMARK 500 2 ASP A 4 115.28 38.45 REMARK 500 2 THR A 5 -54.11 -162.00 REMARK 500 2 SER A 42 -153.31 -102.40 REMARK 500 2 SER A 43 135.24 75.28 REMARK 500 2 LYS A 46 -69.73 -98.65 REMARK 500 2 ARG A 47 -28.35 -179.45 REMARK 500 2 ASP A 53 -69.21 64.38 REMARK 500 2 PRO A 55 44.36 -79.44 REMARK 500 2 PRO A 126 99.72 -69.61 REMARK 500 2 GLN A 127 79.47 -101.84 REMARK 500 3 SER A 2 -90.61 62.69 REMARK 500 3 THR A 5 -61.74 -157.15 REMARK 500 3 ASP A 36 -158.40 68.82 REMARK 500 3 SER A 43 94.55 -69.75 REMARK 500 3 ASP A 53 -77.97 -54.40 REMARK 500 3 ASN A 54 139.19 -171.39 REMARK 500 3 PRO A 55 42.76 -103.30 REMARK 500 3 PHE A 87 -65.60 -90.85 REMARK 500 3 ALA A 94 -175.76 -171.91 REMARK 500 3 GLN A 128 91.45 57.07 REMARK 500 3 ARG A 130 -51.13 76.80 REMARK 500 3 ALA A 131 94.11 60.57 REMARK 500 4 SER A 2 -72.32 68.78 REMARK 500 4 THR A 5 -57.18 -159.29 REMARK 500 4 SER A 43 -86.43 -80.97 REMARK 500 4 ASN A 54 81.67 63.08 REMARK 500 4 HIS A 111 -54.58 -135.48 REMARK 500 4 GLU A 129 81.75 -68.71 REMARK 500 5 ASN A 3 75.94 -117.82 REMARK 500 5 ASP A 4 174.93 64.46 REMARK 500 5 THR A 5 -57.25 -160.70 REMARK 500 5 ASP A 36 167.07 73.91 REMARK 500 5 ASP A 44 80.38 53.75 REMARK 500 REMARK 500 THIS ENTRY HAS 249 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 24 SER A 25 16 149.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ER415 RELATED DB: TARGETDB DBREF 2HFD A 1 132 UNP P19931 HYAE_ECOLI 1 132 SEQADV 2HFD LEU A 133 UNP P19931 CLONING ARTIFACT SEQADV 2HFD GLU A 134 UNP P19931 CLONING ARTIFACT SEQADV 2HFD HIS A 135 UNP P19931 EXPRESSION TAG SEQADV 2HFD HIS A 136 UNP P19931 EXPRESSION TAG SEQADV 2HFD HIS A 137 UNP P19931 EXPRESSION TAG SEQADV 2HFD HIS A 138 UNP P19931 EXPRESSION TAG SEQADV 2HFD HIS A 139 UNP P19931 EXPRESSION TAG SEQADV 2HFD HIS A 140 UNP P19931 EXPRESSION TAG SEQRES 1 A 140 MET SER ASN ASP THR PRO PHE ASP ALA LEU TRP GLN ARG SEQRES 2 A 140 MET LEU ALA ARG GLY TRP THR PRO VAL SER GLU SER ARG SEQRES 3 A 140 LEU ASP ASP TRP LEU THR GLN ALA PRO ASP GLY VAL VAL SEQRES 4 A 140 LEU LEU SER SER ASP PRO LYS ARG THR PRO GLU VAL SER SEQRES 5 A 140 ASP ASN PRO VAL MET ILE GLY GLU LEU LEU ARG GLU PHE SEQRES 6 A 140 PRO ASP TYR THR TRP GLN VAL ALA ILE ALA ASP LEU GLU SEQRES 7 A 140 GLN SER GLU ALA ILE GLY ASP ARG PHE GLY VAL PHE ARG SEQRES 8 A 140 PHE PRO ALA THR LEU VAL PHE THR GLY GLY ASN TYR ARG SEQRES 9 A 140 GLY VAL LEU ASN GLY ILE HIS PRO TRP ALA GLU LEU ILE SEQRES 10 A 140 ASN LEU MET ARG GLY LEU VAL GLU PRO GLN GLN GLU ARG SEQRES 11 A 140 ALA SER LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 THR A 5 ALA A 16 1 12 HELIX 2 2 SER A 23 ALA A 34 1 12 HELIX 3 3 PRO A 55 ARG A 63 1 9 HELIX 4 4 ASP A 76 GLY A 88 1 13 HELIX 5 5 PRO A 112 GLU A 125 1 14 SHEET 1 A 5 THR A 20 VAL A 22 0 SHEET 2 A 5 TRP A 70 ALA A 75 1 O ILE A 74 N VAL A 22 SHEET 3 A 5 ASP A 36 LEU A 41 1 N VAL A 38 O ALA A 73 SHEET 4 A 5 ALA A 94 THR A 99 -1 O LEU A 96 N VAL A 39 SHEET 5 A 5 ASN A 102 LEU A 107 -1 O LEU A 107 N THR A 95 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1