HEADER HNF-3 HOMOLOGUES 27-JAN-98 2HFH TITLE THE NMR STRUCTURES OF A WINGED HELIX PROTEIN: GENESIS, 20 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENESIS; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN; COMPND 5 SYNONYM: HFH-2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 CELL_LINE: 293; SOURCE 6 ORGAN: LIVER, LUNG, HEART; SOURCE 7 CELLULAR_LOCATION: NUCLEUS; SOURCE 8 GENE: HFH-2, GENESIS; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: HMS-174; SOURCE 12 EXPRESSION_SYSTEM_ORGANELLE: INCLUSION BODIES; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET21; SOURCE 15 EXPRESSION_SYSTEM_GENE: T7; SOURCE 16 OTHER_DETAILS: FIRST PUBLISHED IN PNAS 90, 3948-3952 KEYWDS HNF-3 HOMOLOGUES, WINGED HELIX PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR I.MARSDEN,C.JIN,X.LIAO REVDAT 3 09-MAR-22 2HFH 1 REMARK REVDAT 2 24-FEB-09 2HFH 1 VERSN REVDAT 1 17-JUN-98 2HFH 0 JRNL AUTH I.MARSDEN,C.JIN,X.LIAO JRNL TITL STRUCTURAL CHANGES IN THE REGION DIRECTLY ADJACENT TO THE JRNL TITL 2 DNA-BINDING HELIX HIGHLIGHT A POSSIBLE MECHANISM TO EXPLAIN JRNL TITL 3 THE OBSERVED CHANGES IN THE SEQUENCE-SPECIFIC BINDING OF JRNL TITL 4 WINGED HELIX PROTEINS. JRNL REF J.MOL.BIOL. V. 278 293 1998 JRNL REFN ISSN 0022-2836 JRNL PMID 9571051 JRNL DOI 10.1006/JMBI.1998.1703 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.MARSDEN,Y.CHEN,C.JIN,X.LIAO REMARK 1 TITL EVIDENCE THAT THE DNA BINDING SPECIFICITY OF WINGED HELIX REMARK 1 TITL 2 PROTEINS IS MEDIATED BY A STRUCTURAL CHANGE IN THE AMINO REMARK 1 TITL 3 ACID SEQUENCE ADJACENT TO THE PRINCIPAL DNA BINDING HELIX REMARK 1 REF BIOCHEMISTRY V. 36 13248 1997 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DIANA REMARK 3 AUTHORS : GUNTERT,WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2HFH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178184. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 290 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESYHSQC; HNCA; HNCACB; REMARK 210 CBCA(CO)HN; HBHA(CO)HN; HCCHTOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX500; UNITY PLUS 500 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TRIAD REMARK 210 METHOD USED : DIANA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 ARG A 94 REMARK 465 ARG A 95 REMARK 465 ARG A 96 REMARK 465 LYS A 97 REMARK 465 ARG A 98 REMARK 465 PHE A 99 REMARK 465 LYS A 100 REMARK 465 ARG A 101 REMARK 465 LEU A 102 REMARK 465 GLN A 103 REMARK 465 HIS A 104 REMARK 465 HIS A 105 REMARK 465 HIS A 106 REMARK 465 HIS A 107 REMARK 465 HIS A 108 REMARK 465 HIS A 109 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 40 H PHE A 44 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 2 -27.56 85.98 REMARK 500 1 LYS A 3 60.59 26.16 REMARK 500 1 GLN A 21 -84.77 -120.41 REMARK 500 1 LYS A 22 42.68 -179.44 REMARK 500 1 ASN A 58 -82.09 -88.60 REMARK 500 1 CYS A 60 49.61 95.85 REMARK 500 1 ARG A 66 71.68 63.43 REMARK 500 1 LYS A 73 -60.62 -121.58 REMARK 500 1 GLN A 82 -54.82 -122.76 REMARK 500 1 SER A 83 -71.03 -79.47 REMARK 500 1 GLU A 84 18.01 51.30 REMARK 500 1 ASP A 88 68.30 -173.47 REMARK 500 1 SER A 91 -57.01 175.97 REMARK 500 1 PHE A 92 53.54 178.99 REMARK 500 2 PRO A 20 25.38 -75.02 REMARK 500 2 LYS A 22 30.91 95.06 REMARK 500 2 ASN A 58 -76.42 -86.11 REMARK 500 2 CYS A 60 31.06 97.69 REMARK 500 2 ARG A 66 85.86 176.56 REMARK 500 2 ASN A 70 78.20 -119.56 REMARK 500 2 LYS A 73 -86.42 -143.81 REMARK 500 2 GLN A 82 -56.62 174.73 REMARK 500 2 ASP A 88 66.55 175.49 REMARK 500 3 VAL A 2 29.48 42.51 REMARK 500 3 GLN A 21 -82.24 -124.75 REMARK 500 3 LYS A 22 39.06 178.29 REMARK 500 3 ASN A 58 -83.27 -113.55 REMARK 500 3 CYS A 60 52.32 92.24 REMARK 500 3 PRO A 65 33.61 -74.96 REMARK 500 3 ARG A 66 63.99 -173.96 REMARK 500 3 PRO A 68 36.33 -75.00 REMARK 500 3 LYS A 73 -55.00 -142.31 REMARK 500 3 GLN A 82 49.96 74.44 REMARK 500 3 MET A 86 -73.46 -79.90 REMARK 500 3 PHE A 87 -61.78 158.39 REMARK 500 3 SER A 91 79.44 159.72 REMARK 500 4 VAL A 2 27.62 41.99 REMARK 500 4 TYR A 6 -78.80 -119.92 REMARK 500 4 GLN A 21 -82.87 -140.76 REMARK 500 4 LYS A 22 38.71 179.83 REMARK 500 4 ASN A 58 -84.81 -88.12 REMARK 500 4 CYS A 60 44.14 94.62 REMARK 500 4 ARG A 66 84.78 176.57 REMARK 500 4 LYS A 73 -66.36 -120.45 REMARK 500 4 GLN A 82 45.70 176.57 REMARK 500 4 PHE A 87 -53.92 174.84 REMARK 500 4 ASP A 88 31.50 -141.70 REMARK 500 5 TYR A 6 -83.03 -119.22 REMARK 500 5 GLN A 21 -76.76 -106.61 REMARK 500 5 LYS A 22 42.50 167.37 REMARK 500 REMARK 500 THIS ENTRY HAS 271 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2HFH A 2 101 UNP Q63245 FOXD3_RAT 2 101 SEQRES 1 A 109 MET VAL LYS PRO PRO TYR SER TYR ILE ALA LEU ILE THR SEQRES 2 A 109 MET ALA ILE LEU GLN SER PRO GLN LYS LYS LEU THR LEU SEQRES 3 A 109 SER GLY ILE CYS GLU PHE ILE SER ASN ARG PHE PRO TYR SEQRES 4 A 109 TYR ARG GLU LYS PHE PRO ALA TRP GLN ASN SER ILE ARG SEQRES 5 A 109 HIS ASN LEU SER LEU ASN ASP CYS PHE VAL LYS ILE PRO SEQRES 6 A 109 ARG GLU PRO GLY ASN PRO GLY LYS GLY ASN TYR TRP THR SEQRES 7 A 109 LEU ASP PRO GLN SER GLU ASP MET PHE ASP ASN GLY SER SEQRES 8 A 109 PHE LEU ARG ARG ARG LYS ARG PHE LYS ARG LEU GLN HIS SEQRES 9 A 109 HIS HIS HIS HIS HIS HELIX 1 1 TYR A 8 LEU A 17 1 10 HELIX 2 2 LEU A 26 SER A 34 1 9 HELIX 3 3 PRO A 38 ARG A 41 1 4 HELIX 4 4 PRO A 45 ASN A 58 5 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1