HEADER TRANSCRIPTION 25-JUN-06 2HFP TITLE CRYSTAL STRUCTURE OF PPAR GAMMA WITH N-SULFONYL-2-INDOLE CARBOXAMIDE TITLE 2 LIGANDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN (RESIDUES 234-505); COMPND 5 SYNONYM: PPAR-GAMMA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SRC PEPTIDE FRAGMENT; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPARG, NR1C3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST 17; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. KEYWDS PPAR PPARGAMMA LBD, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.E.POKROSS,A.G.EVDOKIMOV,R.L.WALTER,M.J.MEKEL,C.R.HOPKINS REVDAT 4 14-FEB-24 2HFP 1 REMARK SEQADV REVDAT 3 24-FEB-09 2HFP 1 VERSN REVDAT 2 17-OCT-06 2HFP 1 JRNL REVDAT 1 19-SEP-06 2HFP 0 JRNL AUTH C.R.HOPKINS,S.V.O'NEIL,M.C.LAUFERSWEILER,Y.WANG,M.POKROSS, JRNL AUTH 2 M.MEKEL,A.EVDOKIMOV,R.WALTER,M.KONTOYIANNI,M.E.PETREY, JRNL AUTH 3 G.SABATAKOS,J.T.ROESGEN,E.RICHARDSON,T.P.DEMUTH JR. JRNL TITL DESIGN AND SYNTHESIS OF NOVEL N-SULFONYL-2-INDOLE JRNL TITL 2 CARBOXAMIDES AS POTENT PPAR-GAMMA BINDING AGENTS WITH JRNL TITL 3 POTENTIAL APPLICATION TO THE TREATMENT OF OSTEOPOROSIS. JRNL REF BIOORG.MED.CHEM.LETT. V. 16 5659 2006 JRNL REFN ISSN 0960-894X JRNL PMID 16919947 JRNL DOI 10.1016/J.BMCL.2006.08.003 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 19404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 951 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2326 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 122 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.61000 REMARK 3 B22 (A**2) : -0.52000 REMARK 3 B33 (A**2) : -1.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.235 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.220 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.150 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.270 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2455 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3319 ; 1.808 ; 2.030 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 287 ;13.646 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;35.379 ;25.143 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 463 ;18.238 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;16.531 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 372 ; 0.438 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1787 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1176 ; 0.280 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1736 ; 0.327 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 123 ; 0.344 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.425 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.147 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1480 ; 2.638 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2343 ; 3.741 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1083 ; 5.873 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 976 ; 8.618 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HFP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038294. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19433 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 39.821 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 0.930 REMARK 200 R MERGE (I) : 0.04270 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.8 REMARK 200 DATA REDUNDANCY IN SHELL : 0.73 REMARK 200 R MERGE FOR SHELL (I) : 0.33420 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TWO MICROLITERS OF PROTEIN SOLUTION REMARK 280 (10 MG/ML, 1 PEPTIDE FRAGMENT) WAS ADDED TO TWO MICROLITERS OF REMARK 280 WELL (2% PEG400, 1.6 MOLAR AMMONIUM SULFATE, 100 MM MES 6.5) AND REMARK 280 HUNG OVER 1000 MICROLITERS WELL IN A 2 + 2 HANGING DROP REMARK 280 CRYSTALLIZATION SETUP , TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.24350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.03750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.58900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.03750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.24350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.58900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 196 REMARK 465 SER A 197 REMARK 465 TYR A 198 REMARK 465 TYR A 199 REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 HIS A 202 REMARK 465 HIS A 203 REMARK 465 HIS A 204 REMARK 465 HIS A 205 REMARK 465 HIS B 597 REMARK 465 SER B 598 REMARK 465 SER B 599 REMARK 465 LEU B 600 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 275 O HOH A 39 1.82 REMARK 500 ND2 ASN A 402 O HOH A 111 1.95 REMARK 500 NE2 GLN A 273 O HOH A 70 2.06 REMARK 500 O HOH A 104 O HOH A 107 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE1 TYR A 477 O HOH A 21 4555 1.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 234 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 207 110.44 154.57 REMARK 500 LYS A 240 -117.51 119.19 REMARK 500 THR A 241 -115.57 -44.99 REMARK 500 THR A 242 -74.98 -118.66 REMARK 500 ASP A 243 84.09 20.49 REMARK 500 SER A 245 115.09 108.04 REMARK 500 GLU A 272 42.20 37.19 REMARK 500 GLN A 273 -38.52 -25.96 REMARK 500 ASN A 335 -169.32 -120.13 REMARK 500 LYS A 358 -78.01 70.33 REMARK 500 GLU A 460 69.08 -105.23 REMARK 500 ASP A 462 -31.82 90.00 REMARK 500 ASP A 475 42.79 -107.01 REMARK 500 GLU B 602 -142.63 68.97 REMARK 500 ARG B 603 -42.07 100.85 REMARK 500 SER B 615 120.01 133.80 REMARK 500 PRO B 616 150.15 -46.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 206 GLU A 207 -67.05 REMARK 500 LYS A 240 THR A 241 -93.37 REMARK 500 THR A 242 ASP A 243 109.49 REMARK 500 ASP A 243 LYS A 244 -139.88 REMARK 500 LYS A 244 SER A 245 129.68 REMARK 500 ARG A 357 LYS A 358 126.11 REMARK 500 GLU B 613 GLY B 614 -148.26 REMARK 500 GLY B 614 SER B 615 -134.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NSI A 478 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NSI A 479 DBREF 2HFP A 206 477 UNP Q86U60 PPARG_HUMAN 234 505 DBREF 2HFP B 597 617 UNP Q2T9G5 Q2T9G5_HUMAN 680 700 SEQADV 2HFP MET A 196 UNP Q86U60 CLONING ARTIFACT SEQADV 2HFP SER A 197 UNP Q86U60 CLONING ARTIFACT SEQADV 2HFP TYR A 198 UNP Q86U60 CLONING ARTIFACT SEQADV 2HFP TYR A 199 UNP Q86U60 CLONING ARTIFACT SEQADV 2HFP HIS A 200 UNP Q86U60 CLONING ARTIFACT SEQADV 2HFP HIS A 201 UNP Q86U60 CLONING ARTIFACT SEQADV 2HFP HIS A 202 UNP Q86U60 CLONING ARTIFACT SEQADV 2HFP HIS A 203 UNP Q86U60 CLONING ARTIFACT SEQADV 2HFP HIS A 204 UNP Q86U60 CLONING ARTIFACT SEQADV 2HFP HIS A 205 UNP Q86U60 CLONING ARTIFACT SEQRES 1 A 282 MET SER TYR TYR HIS HIS HIS HIS HIS HIS PRO GLU SER SEQRES 2 A 282 ALA ASP LEU ARG ALA LEU ALA LYS HIS LEU TYR ASP SER SEQRES 3 A 282 TYR ILE LYS SER PHE PRO LEU THR LYS ALA LYS ALA ARG SEQRES 4 A 282 ALA ILE LEU THR GLY LYS THR THR ASP LYS SER PRO PHE SEQRES 5 A 282 VAL ILE TYR ASP MET ASN SER LEU MET MET GLY GLU ASP SEQRES 6 A 282 LYS ILE LYS PHE LYS HIS ILE THR PRO LEU GLN GLU GLN SEQRES 7 A 282 SER LYS GLU VAL ALA ILE ARG ILE PHE GLN GLY CYS GLN SEQRES 8 A 282 PHE ARG SER VAL GLU ALA VAL GLN GLU ILE THR GLU TYR SEQRES 9 A 282 ALA LYS SER ILE PRO GLY PHE VAL ASN LEU ASP LEU ASN SEQRES 10 A 282 ASP GLN VAL THR LEU LEU LYS TYR GLY VAL HIS GLU ILE SEQRES 11 A 282 ILE TYR THR MET LEU ALA SER LEU MET ASN LYS ASP GLY SEQRES 12 A 282 VAL LEU ILE SER GLU GLY GLN GLY PHE MET THR ARG GLU SEQRES 13 A 282 PHE LEU LYS SER LEU ARG LYS PRO PHE GLY ASP PHE MET SEQRES 14 A 282 GLU PRO LYS PHE GLU PHE ALA VAL LYS PHE ASN ALA LEU SEQRES 15 A 282 GLU LEU ASP ASP SER ASP LEU ALA ILE PHE ILE ALA VAL SEQRES 16 A 282 ILE ILE LEU SER GLY ASP ARG PRO GLY LEU LEU ASN VAL SEQRES 17 A 282 LYS PRO ILE GLU ASP ILE GLN ASP ASN LEU LEU GLN ALA SEQRES 18 A 282 LEU GLU LEU GLN LEU LYS LEU ASN HIS PRO GLU SER SER SEQRES 19 A 282 GLN LEU PHE ALA LYS LEU LEU GLN LYS MET THR ASP LEU SEQRES 20 A 282 ARG GLN ILE VAL THR GLU HIS VAL GLN LEU LEU GLN VAL SEQRES 21 A 282 ILE LYS LYS THR GLU THR ASP MET SER LEU HIS PRO LEU SEQRES 22 A 282 LEU GLN GLU ILE TYR LYS ASP LEU TYR SEQRES 1 B 21 HIS SER SER LEU THR GLU ARG HIS LYS ILE LEU HIS ARG SEQRES 2 B 21 LEU LEU GLN GLU GLY SER PRO SER HET NSI A 478 40 HET NSI A 479 40 HETNAM NSI 3-(4-METHOXYPHENYL)-N-(PHENYLSULFONYL)-1-[3- HETNAM 2 NSI (TRIFLUOROMETHYL)BENZYL]-1H-INDOLE-2-CARBOXAMIDE FORMUL 3 NSI 2(C30 H23 F3 N2 O4 S) FORMUL 5 HOH *122(H2 O) HELIX 1 1 GLU A 207 PHE A 226 1 20 HELIX 2 2 THR A 229 GLY A 239 1 11 HELIX 3 3 ASP A 251 LYS A 263 1 13 HELIX 4 4 PHE A 264 HIS A 266 5 3 HELIX 5 5 ILE A 267 GLU A 272 5 6 HELIX 6 6 GLU A 276 SER A 302 1 27 HELIX 7 7 GLY A 305 LEU A 309 5 5 HELIX 8 8 ASP A 310 LEU A 333 1 24 HELIX 9 9 ARG A 350 SER A 355 1 6 HELIX 10 10 PRO A 359 PHE A 363 5 5 HELIX 11 11 MET A 364 ALA A 376 1 13 HELIX 12 12 ASP A 380 LEU A 393 1 14 HELIX 13 13 ASN A 402 HIS A 425 1 24 HELIX 14 14 GLN A 430 GLU A 460 1 31 HELIX 15 15 HIS A 466 LYS A 474 1 9 HELIX 16 16 HIS B 604 GLN B 612 1 9 SHEET 1 A 4 PHE A 247 ILE A 249 0 SHEET 2 A 4 GLY A 346 THR A 349 1 O PHE A 347 N ILE A 249 SHEET 3 A 4 GLY A 338 ILE A 341 -1 N VAL A 339 O MET A 348 SHEET 4 A 4 MET A 334 ASN A 335 -1 N ASN A 335 O GLY A 338 CISPEP 1 GLU B 602 ARG B 603 0 -14.32 SITE 1 AC1 15 HOH A 56 HOH A 128 GLU A 259 LYS A 265 SITE 2 AC1 15 HIS A 266 ILE A 281 GLY A 284 CYS A 285 SITE 3 AC1 15 ARG A 288 ALA A 292 ILE A 326 LEU A 330 SITE 4 AC1 15 ILE A 341 SER A 342 NSI A 479 SITE 1 AC2 14 ALA A 278 CYS A 285 GLN A 286 HIS A 323 SITE 2 AC2 14 TYR A 327 PHE A 360 PHE A 363 LYS A 367 SITE 3 AC2 14 HIS A 449 LEU A 452 LEU A 453 LEU A 469 SITE 4 AC2 14 TYR A 473 NSI A 478 CRYST1 46.487 77.178 82.075 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021511 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012957 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012184 0.00000