HEADER TRANSFERASE 26-JUN-06 2HFZ TITLE CRYSTAL STRUCTURE OF RNA DEPENDENT RNA POLYMERASE DOMAIN FROM WEST TITLE 2 NILE VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE(NS5); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA-DIRECTED RNA POLYMERASE DOMAIN; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KUNJIN VIRUS; SOURCE 3 ORGANISM_TAXID: 11077; SOURCE 4 STRAIN: KUNJIN; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C41PROS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST14 KEYWDS WEST NILE VIRUS RNA POLYMERASE, STRUCTURAL GENOMICS, MARSEILLES KEYWDS 2 STRUCTURAL GENOMICS PROGRAM @ AFMB, MSGP, VIZIER, VIRAL ENZYMES KEYWDS 3 INVOLVED IN REPLICATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.P.EGLOFF,H.MALET,MARSEILLES STRUCTURAL GENOMICS PROGRAM @ AFMB AUTHOR 2 (MSGP) REVDAT 6 30-OCT-24 2HFZ 1 REMARK REVDAT 5 30-AUG-23 2HFZ 1 REMARK SEQADV LINK REVDAT 4 24-FEB-09 2HFZ 1 VERSN REVDAT 3 28-AUG-07 2HFZ 1 JRNL KEYWDS REVDAT 2 21-AUG-07 2HFZ 1 JRNL REVDAT 1 06-FEB-07 2HFZ 0 JRNL AUTH H.MALET,M.P.EGLOFF,B.SELISKO,R.E.BUTCHER,P.J.WRIGHT, JRNL AUTH 2 M.ROBERTS,A.GRUEZ,G.SULZENBACHER,C.VONRHEIN,G.BRICOGNE, JRNL AUTH 3 J.M.MACKENZIE,A.A.KHROMYKH,A.D.DAVIDSON,B.CANARD JRNL TITL CRYSTAL STRUCTURE OF THE RNA POLYMERASE DOMAIN OF THE WEST JRNL TITL 2 NILE VIRUS NON-STRUCTURAL PROTEIN 5 JRNL REF J.BIOL.CHEM. V. 282 10678 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17287213 JRNL DOI 10.1074/JBC.M607273200 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 1.3.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 95.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 14324 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.260 REMARK 3 R VALUE (WORKING SET) : 0.260 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1440 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.18 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.07 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2354 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 31.840 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2093 REMARK 3 BIN R VALUE (WORKING SET) : 0.3134 REMARK 3 BIN FREE R VALUE : 0.3593 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 11.09 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 261 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4915 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 89.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -15.52074 REMARK 3 B22 (A**2) : 9.04763 REMARK 3 B33 (A**2) : 6.47312 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.630 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : NULL ; NULL ; NULL REMARK 3 BOND ANGLES : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : NULL ; NULL ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2HFZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038303. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14328 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 21.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.33700 REMARK 200 R SYM FOR SHELL (I) : 0.33700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2HCS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5-25% PEG 1000 0.1 M NACACODYLATE 0.3 REMARK 280 M MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.66650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.72450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 95.03700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.66650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.72450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 95.03700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.66650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.72450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 95.03700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.66650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.72450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 95.03700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 LYS A 273 REMARK 465 ALA A 410 REMARK 465 LEU A 411 REMARK 465 GLY A 412 REMARK 465 ALA A 413 REMARK 465 MET A 414 REMARK 465 PHE A 415 REMARK 465 LYS A 459 REMARK 465 ARG A 460 REMARK 465 GLU A 461 REMARK 465 LYS A 462 REMARK 465 LYS A 463 REMARK 465 PRO A 464 REMARK 465 GLY A 465 REMARK 465 GLU A 466 REMARK 465 PHE A 467 REMARK 465 GLY A 468 REMARK 465 LYS A 469 REMARK 465 ALA A 470 REMARK 465 VAL A 900 REMARK 465 GLU A 901 REMARK 465 ASP A 902 REMARK 465 THR A 903 REMARK 465 VAL A 904 REMARK 465 LEU A 905 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 847 CG CD NE CZ NH1 NH2 REMARK 470 TRP A 851 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 851 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 733 CB CYS A 733 SG 0.176 REMARK 500 CYS A 852 CB CYS A 852 SG 0.144 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 315 C - N - CD ANGL. DEV. = -14.0 DEGREES REMARK 500 HIS A 444 CB - CA - C ANGL. DEV. = -13.0 DEGREES REMARK 500 PRO A 747 C - N - CD ANGL. DEV. = -14.5 DEGREES REMARK 500 CYS A 852 CA - CB - SG ANGL. DEV. = 11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 276 64.98 162.05 REMARK 500 SER A 277 -51.77 -135.26 REMARK 500 HIS A 295 161.31 177.13 REMARK 500 SER A 320 -92.33 -174.81 REMARK 500 LEU A 330 30.34 -95.15 REMARK 500 SER A 331 46.65 -160.02 REMARK 500 TRP A 334 0.74 -69.55 REMARK 500 THR A 336 32.93 -89.90 REMARK 500 THR A 338 25.57 -57.69 REMARK 500 LYS A 358 42.72 -103.79 REMARK 500 GLU A 359 -22.98 -156.04 REMARK 500 THR A 363 42.67 177.09 REMARK 500 LYS A 364 90.73 -27.08 REMARK 500 ALA A 365 105.98 -31.37 REMARK 500 SER A 407 -117.06 -145.71 REMARK 500 ASN A 408 -68.36 35.58 REMARK 500 GLN A 418 -141.98 -155.41 REMARK 500 TYR A 454 13.27 -68.93 REMARK 500 MET A 457 -74.21 -138.87 REMARK 500 VAL A 509 23.45 -145.56 REMARK 500 TYR A 575 -65.94 -99.68 REMARK 500 SER A 604 -172.48 168.25 REMARK 500 GLN A 606 2.77 -40.76 REMARK 500 LYS A 642 53.05 -12.17 REMARK 500 GLN A 709 -3.65 -54.44 REMARK 500 ALA A 749 78.99 -49.35 REMARK 500 SER A 801 -66.72 60.87 REMARK 500 ILE A 802 -169.02 -75.76 REMARK 500 HIS A 803 -60.69 -156.24 REMARK 500 ILE A 823 -68.26 -124.91 REMARK 500 MET A 888 -71.36 -72.15 REMARK 500 THR A 898 114.13 2.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 907 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 440 OE2 REMARK 620 2 HIS A 444 NE2 107.3 REMARK 620 3 CYS A 449 SG 92.0 128.0 REMARK 620 4 CYS A 452 SG 110.2 123.7 90.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 906 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 536 OD1 REMARK 620 2 ASP A 669 OD1 85.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 907 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HCN RELATED DB: PDB REMARK 900 SHORTER CONSTRUCT (317-905) OF THE SAME PROTEIN COMPLEXED WITH REMARK 900 CALCIUM REMARK 900 RELATED ID: 2HCS RELATED DB: PDB REMARK 900 SHORTER CONSTRUCT (317-905) OF THE SAME PROTEIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE REMARK 999 LYS 273 HAS BEEN CLONED ON PURPOSE FOR EXPRESSION REMARK 999 IMPROVEMENT DBREF 2HFZ A 274 905 UNP P14335 POLG_KUNJM 2802 3433 SEQADV 2HFZ HIS A 267 UNP P14335 EXPRESSION TAG SEQADV 2HFZ HIS A 268 UNP P14335 EXPRESSION TAG SEQADV 2HFZ HIS A 269 UNP P14335 EXPRESSION TAG SEQADV 2HFZ HIS A 270 UNP P14335 EXPRESSION TAG SEQADV 2HFZ HIS A 271 UNP P14335 EXPRESSION TAG SEQADV 2HFZ HIS A 272 UNP P14335 EXPRESSION TAG SEQADV 2HFZ LYS A 273 UNP P14335 SEE REMARK 999 SEQRES 1 A 639 HIS HIS HIS HIS HIS HIS LYS SER ASP THR SER LYS ILE SEQRES 2 A 639 LYS ASN ARG ILE GLU ARG LEU ARG ARG GLU TYR SER SER SEQRES 3 A 639 THR TRP HIS HIS ASP GLU ASN HIS PRO TYR ARG THR TRP SEQRES 4 A 639 ASN TYR HIS GLY SER TYR GLU VAL LYS PRO THR GLY SER SEQRES 5 A 639 ALA SER SER LEU VAL ASN GLY VAL VAL ARG LEU LEU SER SEQRES 6 A 639 LYS PRO TRP ASP THR ILE THR ASN VAL THR THR MET ALA SEQRES 7 A 639 MET THR ASP THR THR PRO PHE GLY GLN GLN ARG VAL PHE SEQRES 8 A 639 LYS GLU LYS VAL ASP THR LYS ALA PRO GLU PRO PRO GLU SEQRES 9 A 639 GLY VAL LYS TYR VAL LEU ASN GLU THR THR ASN TRP LEU SEQRES 10 A 639 TRP ALA PHE LEU ALA ARG GLU LYS ARG PRO ARG MET CYS SEQRES 11 A 639 SER ARG GLU GLU PHE ILE ARG LYS VAL ASN SER ASN ALA SEQRES 12 A 639 ALA LEU GLY ALA MET PHE GLU GLU GLN ASN GLN TRP ARG SEQRES 13 A 639 SER ALA ARG GLU ALA VAL GLU ASP PRO LYS PHE TRP GLU SEQRES 14 A 639 MET VAL ASP GLU GLU ARG GLU ALA HIS LEU ARG GLY GLU SEQRES 15 A 639 CYS HIS THR CYS ILE TYR ASN MET MET GLY LYS ARG GLU SEQRES 16 A 639 LYS LYS PRO GLY GLU PHE GLY LYS ALA LYS GLY SER ARG SEQRES 17 A 639 ALA ILE TRP PHE MET TRP LEU GLY ALA ARG PHE LEU GLU SEQRES 18 A 639 PHE GLU ALA LEU GLY PHE LEU ASN GLU ASP HIS TRP LEU SEQRES 19 A 639 GLY ARG LYS ASN SER GLY GLY GLY VAL GLU GLY LEU GLY SEQRES 20 A 639 LEU GLN LYS LEU GLY TYR ILE LEU ARG GLU VAL GLY THR SEQRES 21 A 639 ARG PRO GLY GLY ARG ILE TYR ALA ASP ASP THR ALA GLY SEQRES 22 A 639 TRP ASP THR ARG ILE THR ARG ALA ASP LEU GLU ASN GLU SEQRES 23 A 639 ALA LYS VAL LEU GLU LEU LEU ASP GLY GLU HIS ARG ARG SEQRES 24 A 639 LEU ALA ARG ALA ILE ILE GLU LEU THR TYR ARG HIS LYS SEQRES 25 A 639 VAL VAL LYS VAL MET ARG PRO ALA ALA ASP GLY ARG THR SEQRES 26 A 639 VAL MET ASP VAL ILE SER ARG GLU ASP GLN ARG GLY SER SEQRES 27 A 639 GLY GLN VAL VAL THR TYR ALA LEU ASN THR PHE THR ASN SEQRES 28 A 639 LEU ALA VAL GLN LEU VAL ARG MET MET GLU GLY GLU GLY SEQRES 29 A 639 VAL ILE GLY PRO ASP ASP VAL GLU LYS LEU THR LYS GLY SEQRES 30 A 639 LYS GLY PRO LYS VAL ARG THR TRP LEU SER GLU ASN GLY SEQRES 31 A 639 GLU GLU ARG LEU SER ARG MET ALA VAL SER GLY ASP ASP SEQRES 32 A 639 CYS VAL VAL LYS PRO LEU ASP ASP ARG PHE ALA THR SER SEQRES 33 A 639 LEU HIS PHE LEU ASN ALA MET SER LYS VAL ARG LYS ASP SEQRES 34 A 639 ILE GLN GLU TRP LYS PRO SER THR GLY TRP TYR ASP TRP SEQRES 35 A 639 GLN GLN VAL PRO PHE CYS SER ASN HIS PHE THR GLU LEU SEQRES 36 A 639 ILE MET LYS ASP GLY ARG THR LEU VAL THR PRO CYS ARG SEQRES 37 A 639 GLY GLN ASP GLU LEU VAL GLY ARG ALA ARG ILE SER PRO SEQRES 38 A 639 GLY ALA GLY TRP ASN VAL ARG ASP THR ALA CYS LEU ALA SEQRES 39 A 639 LYS SER TYR ALA GLN MET TRP LEU LEU LEU TYR PHE HIS SEQRES 40 A 639 ARG ARG ASP LEU ARG LEU MET ALA ASN ALA ILE CYS SER SEQRES 41 A 639 ALA VAL PRO VAL ASN TRP VAL PRO THR GLY ARG THR THR SEQRES 42 A 639 TRP SER ILE HIS ALA GLY GLY GLU TRP MET THR THR GLU SEQRES 43 A 639 ASP MET LEU GLU VAL TRP ASN ARG VAL TRP ILE GLU GLU SEQRES 44 A 639 ASN GLU TRP MET GLU ASP LYS THR PRO VAL GLU LYS TRP SEQRES 45 A 639 SER ASP VAL PRO TYR SER GLY LYS ARG GLU ASP ILE TRP SEQRES 46 A 639 CYS GLY SER LEU ILE GLY THR ARG ALA ARG ALA THR TRP SEQRES 47 A 639 ALA GLU ASN ILE GLN VAL ALA ILE ASN GLN VAL ARG SER SEQRES 48 A 639 ILE ILE GLY ASP GLU LYS TYR VAL ASP TYR MET SER SER SEQRES 49 A 639 LEU LYS ARG TYR GLU ASP THR THR LEU VAL GLU ASP THR SEQRES 50 A 639 VAL LEU HET MG A 906 1 HET ZN A 907 1 HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION FORMUL 2 MG MG 2+ FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *12(H2 O) HELIX 1 1 ILE A 279 ARG A 288 1 10 HELIX 2 2 ASN A 324 LEU A 330 1 7 HELIX 3 3 SER A 331 ILE A 337 5 7 HELIX 4 4 THR A 349 LYS A 358 1 10 HELIX 5 5 PRO A 369 ALA A 388 1 20 HELIX 6 6 SER A 397 ASN A 406 1 10 HELIX 7 7 GLN A 420 VAL A 428 1 9 HELIX 8 8 ASP A 430 LEU A 445 1 16 HELIX 9 9 ARG A 474 GLY A 492 1 19 HELIX 10 10 GLY A 492 ASP A 497 1 6 HELIX 11 11 GLY A 501 GLY A 506 1 6 HELIX 12 12 GLY A 513 GLY A 525 1 13 HELIX 13 13 GLY A 539 ARG A 543 5 5 HELIX 14 14 THR A 545 ALA A 553 1 9 HELIX 15 15 LYS A 554 LEU A 559 5 6 HELIX 16 16 ASP A 560 THR A 574 1 15 HELIX 17 17 ALA A 587 GLY A 589 5 3 HELIX 18 18 GLY A 605 GLU A 629 1 25 HELIX 19 19 LYS A 644 SER A 661 1 18 HELIX 20 20 ASP A 676 SER A 682 5 7 HELIX 21 21 LEU A 683 MET A 689 1 7 HELIX 22 22 ASP A 707 VAL A 711 5 5 HELIX 23 23 GLY A 735 ARG A 744 1 10 HELIX 24 24 ASN A 752 TYR A 771 1 20 HELIX 25 25 ARG A 774 VAL A 788 1 15 HELIX 26 26 ASP A 813 ILE A 823 1 11 HELIX 27 27 LYS A 837 VAL A 841 5 5 HELIX 28 28 GLY A 845 LYS A 846 5 2 HELIX 29 29 GLU A 848 ILE A 850 5 3 HELIX 30 30 THR A 858 ASN A 867 1 10 HELIX 31 31 ILE A 868 GLY A 880 1 13 HELIX 32 32 MET A 888 ARG A 893 1 6 SHEET 1 A 3 ASN A 306 GLU A 312 0 SHEET 2 A 3 THR A 591 GLU A 599 -1 O VAL A 595 N GLY A 309 SHEET 3 A 3 HIS A 577 PRO A 585 -1 N VAL A 582 O ASP A 594 SHEET 1 B 2 MET A 663 SER A 666 0 SHEET 2 B 2 ASP A 669 VAL A 672 -1 O ASP A 669 N SER A 666 SHEET 1 C 2 HIS A 717 ILE A 722 0 SHEET 2 C 2 THR A 728 CYS A 733 -1 O LEU A 729 N LEU A 721 SSBOND 1 CYS A 733 CYS A 852 1555 1555 2.04 LINK OE2 GLU A 440 ZN ZN A 907 1555 1555 2.23 LINK NE2 HIS A 444 ZN ZN A 907 1555 1555 2.25 LINK SG CYS A 449 ZN ZN A 907 1555 1555 2.42 LINK SG CYS A 452 ZN ZN A 907 1555 1555 2.42 LINK OD1 ASP A 536 MG MG A 906 1555 1555 2.67 LINK OD1 ASP A 669 MG MG A 906 1555 1555 2.73 SITE 1 AC1 4 ALA A 534 ASP A 536 ASP A 669 CYS A 670 SITE 1 AC2 4 GLU A 440 HIS A 444 CYS A 449 CYS A 452 CRYST1 73.333 103.449 190.074 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013636 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009667 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005261 0.00000