HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 26-JUN-06 2HG7 TITLE SOLUTION NMR STRUCTURE OF PHAGE-LIKE ELEMENT PBSX PROTEIN XKDW, TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SR355 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHAGE-LIKE ELEMENT PBSX PROTEIN XKDW; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: XKDW; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BC21(DE3)+MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SR355-21.2 KEYWDS PHAGE-LIKE ELEMENT PBSX PROTEIN XKDW, DIMER, GFT NMR, STRUCTURAL KEYWDS 2 GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL KEYWDS 3 GENOMICS CONSORTIUM, NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.LIU,D.PARISH,D.XU,H.ATREYA,D.SUKUMARAN,C.K.HO,M.JIANG,K.CUNNINGHAM, AUTHOR 2 L.-C.MA,R.XIAO,J.LIU,M.BARAN,G.V.SWAPNA,T.B.ACTON,B.ROST, AUTHOR 3 G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 4 (NESG) REVDAT 3 09-MAR-22 2HG7 1 REMARK REVDAT 2 24-FEB-09 2HG7 1 VERSN REVDAT 1 22-AUG-06 2HG7 0 JRNL AUTH G.LIU,D.PARISH,D.XU,H.ATREYA,D.SUKUMARAN,C.K.HO,M.JIANG, JRNL AUTH 2 K.CUNNINGHAM,L.-C.MA,R.XIAO,J.LIU,M.BARAN,G.V.T.SWAPNA, JRNL AUTH 3 T.B.ACTON,B.ROST,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF PHAGE-LIKE ELEMENT PBSX PROTEIN JRNL TITL 2 XKDW, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SR355 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CNS 1.1 REMARK 3 AUTHORS : VARIAN (VNMR), BRUNGER, A.T. (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2HG7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038311. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : N.A. REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.02% NAN3, 100MM DTT, 5MM REMARK 210 CACL2, 100MM NACL, 20MM MES, PH REMARK 210 6.5, 95% H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : SIMULTANEOUS HETERONUCLEAR REMARK 210 RESOLVED [1H,1H]-NOESY; GFT (4,3) REMARK 210 D HNNCABCA; GFT (4,3)D CABCA(CO) REMARK 210 NHN; GFT (4,3)D HABCAB(CO)NHN; REMARK 210 GFT (4,3)D HCCH REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.3, AUTOASSIGN 1.15.1, REMARK 210 AUTOSTRUCTURE 2.0, CYANA 21 REMARK 210 METHOD USED : SIMULATED ANNEALING MOLECULAR REMARK 210 DYNAMICS TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 PRO A 61 REMARK 465 PRO A 62 REMARK 465 ASP A 63 REMARK 465 GLN A 64 REMARK 465 VAL A 65 REMARK 465 GLU A 66 REMARK 465 LEU A 67 REMARK 465 LEU A 68 REMARK 465 ALA A 69 REMARK 465 GLN A 70 REMARK 465 GLU A 71 REMARK 465 LEU A 72 REMARK 465 SER A 73 REMARK 465 GLN A 74 REMARK 465 GLU A 75 REMARK 465 LYS A 76 REMARK 465 LEU A 77 REMARK 465 ALA A 78 REMARK 465 ARG A 79 REMARK 465 LYS A 80 REMARK 465 GLN A 81 REMARK 465 LEU A 82 REMARK 465 GLU A 83 REMARK 465 GLU A 84 REMARK 465 LEU A 85 REMARK 465 ASN A 86 REMARK 465 LYS A 87 REMARK 465 THR A 88 REMARK 465 LEU A 89 REMARK 465 GLY A 90 REMARK 465 ASN A 91 REMARK 465 GLU A 92 REMARK 465 LEU A 93 REMARK 465 SER A 94 REMARK 465 ASP A 95 REMARK 465 ILE A 96 REMARK 465 LYS A 97 REMARK 465 LEU A 98 REMARK 465 SER A 99 REMARK 465 LEU A 100 REMARK 465 LEU A 101 REMARK 465 SER A 102 REMARK 465 LEU A 103 REMARK 465 GLU A 104 REMARK 465 HIS A 105 REMARK 465 HIS A 106 REMARK 465 HIS A 107 REMARK 465 HIS A 108 REMARK 465 HIS A 109 REMARK 465 HIS A 110 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 18 -73.73 -141.58 REMARK 500 2 LYS A 18 -68.21 -145.89 REMARK 500 2 ARG A 37 46.71 -79.96 REMARK 500 3 LYS A 18 -62.21 -135.00 REMARK 500 3 GLU A 32 -58.95 -125.63 REMARK 500 3 ARG A 37 43.21 -85.94 REMARK 500 4 ARG A 17 -33.90 75.33 REMARK 500 5 LYS A 18 -72.82 -116.26 REMARK 500 5 ARG A 37 40.08 -83.13 REMARK 500 6 TYR A 11 79.84 -117.80 REMARK 500 6 LYS A 18 -69.64 -109.29 REMARK 500 6 ASN A 27 35.29 -95.91 REMARK 500 6 GLU A 32 -53.67 -125.23 REMARK 500 7 LYS A 18 -76.48 -116.38 REMARK 500 7 GLU A 32 -53.62 -121.10 REMARK 500 7 ARG A 37 49.03 -81.79 REMARK 500 7 ASN A 56 107.78 78.29 REMARK 500 8 LYS A 18 -60.16 -140.92 REMARK 500 8 ARG A 37 36.06 -87.50 REMARK 500 9 LYS A 18 -72.06 -125.05 REMARK 500 9 ARG A 37 41.80 -82.59 REMARK 500 9 ASN A 56 109.20 71.52 REMARK 500 9 PRO A 58 -177.88 -69.27 REMARK 500 10 ARG A 37 36.20 -92.57 REMARK 500 12 SER A 16 39.96 -84.07 REMARK 500 12 ARG A 17 -72.59 -95.49 REMARK 500 13 LYS A 18 -64.95 -109.95 REMARK 500 13 ARG A 37 35.93 -89.46 REMARK 500 14 SER A 16 37.43 -88.96 REMARK 500 14 LYS A 18 -67.32 -105.47 REMARK 500 14 ARG A 37 45.99 -85.88 REMARK 500 15 ARG A 17 -3.82 69.95 REMARK 500 15 TYR A 30 -168.09 -111.71 REMARK 500 15 GLU A 32 -61.67 -96.06 REMARK 500 15 ARG A 37 44.93 -82.65 REMARK 500 15 ASN A 56 99.00 63.45 REMARK 500 16 LYS A 18 -72.36 -146.06 REMARK 500 16 ARG A 37 39.53 -84.85 REMARK 500 17 LYS A 18 -69.41 -140.68 REMARK 500 17 ARG A 37 34.34 -90.25 REMARK 500 18 SER A 16 37.81 -83.48 REMARK 500 18 LYS A 18 -45.78 -145.05 REMARK 500 18 ARG A 37 48.02 -83.22 REMARK 500 19 SER A 16 36.73 -85.89 REMARK 500 19 ARG A 17 -60.34 -97.29 REMARK 500 19 ARG A 37 42.35 -82.13 REMARK 500 20 LYS A 18 -59.66 -140.40 REMARK 500 20 ARG A 37 36.18 -83.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SR355 RELATED DB: TARGETDB DBREF 2HG7 A 1 102 UNP P54342 XKDW_BACSU 1 103 SEQRES 1 A 110 MET ILE LEU TYR ASP ALA ILE MET TYR LYS TYR PRO ASN SEQRES 2 A 110 ALA VAL SER ARG LYS ASP PHE GLU LEU ARG ASN ASP GLY SEQRES 3 A 110 ASN GLY SER TYR ILE GLU LYS TRP ASN LEU ARG ALA PRO SEQRES 4 A 110 LEU PRO THR GLN ALA GLU LEU GLU THR TRP TRP GLU GLU SEQRES 5 A 110 LEU GLN LYS ASN PRO PRO TYR GLU PRO PRO ASP GLN VAL SEQRES 6 A 110 GLU LEU LEU ALA GLN GLU LEU SER GLN GLU LYS LEU ALA SEQRES 7 A 110 ARG LYS GLN LEU GLU GLU LEU ASN LYS THR LEU GLY ASN SEQRES 8 A 110 GLU LEU SER ASP ILE LYS LEU SER LEU LEU SER LEU GLU SEQRES 9 A 110 HIS HIS HIS HIS HIS HIS HELIX 1 1 ILE A 2 TYR A 11 1 10 HELIX 2 2 THR A 42 ASN A 56 1 15 SHEET 1 A 2 PHE A 20 ASN A 24 0 SHEET 2 A 2 SER A 29 TRP A 34 -1 O GLU A 32 N GLU A 21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1