HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 27-JUN-06 2HGK TITLE SOLUTION NMR STRUCTURE OF PROTEIN YQCC FROM E. COLI: NORTHEAST TITLE 2 STRUCTURAL GENOMICS CONSORTIUM TARGET ER225 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YQCC; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: YQCC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS HELICAL BUNDLE, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, UNKNOWN KEYWDS 3 FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.R.CORT,D.WANG,K.SHETTY,K.CUNNINGHAM,L.C.MA,R.XIAO,J.LIU,M.BARAN, AUTHOR 2 G.V.T.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE,M.A.KENNEDY,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 5 29-MAY-24 2HGK 1 REMARK REVDAT 4 09-MAR-22 2HGK 1 REMARK SEQADV REVDAT 3 24-FEB-09 2HGK 1 VERSN REVDAT 2 02-OCT-07 2HGK 1 AUTHOR REVDAT 1 05-JUN-07 2HGK 0 JRNL AUTH J.R.CORT,M.A.KENNEDY JRNL TITL NMR STRUCTURE OF PROTEIN YQCC FROM E.COLI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FELIX 97, X-PLOR NIH, CNS 1.1 REMARK 3 AUTHORS : MSI (FELIX), BRUNGER, A.T. (X-PLOR), BRUNGER, A.T. REMARK 3 (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2HGK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038323. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 MM NACL, 5 MM CACL2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM U-13C,15N YQCC, 20 MM MES, REMARK 210 100 MM NACL, 10 MM DTT, 5 MM REMARK 210 CACL2, 0.02% NAN3, 5% D2O, 95% REMARK 210 H2O; 1 MM U-13C,15N YQCC, 20 MM REMARK 210 MES, 100 MM NACL, 10 MM DTT, 5 REMARK 210 MM CACL2, 0.02% NAN3, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 4D_13C- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ; 800 MHZ; 900 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, SPARKY 3.106, REMARK 210 AUTOSTRUCTURE 2.1.1 REMARK 210 METHOD USED : THE STRUCTURE WAS SOLVED REMARK 210 AUTOMATICALLY USING REMARK 210 AUTOSTRUCTURE, AND REFINED REMARK 210 MANUALLY WITH XPLOR AND CNS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY AND FEWEST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 21 59.46 -96.72 REMARK 500 1 GLN A 22 96.50 -35.77 REMARK 500 1 PRO A 29 82.12 -17.33 REMARK 500 1 TRP A 53 -47.79 71.78 REMARK 500 1 VAL A 54 -69.22 -95.09 REMARK 500 1 ASP A 106 -62.95 -99.42 REMARK 500 2 ARG A 25 -43.95 -130.25 REMARK 500 2 ASN A 26 73.33 49.92 REMARK 500 2 TRP A 53 -52.73 66.20 REMARK 500 2 VAL A 54 -73.55 -96.94 REMARK 500 2 HIS A 87 88.11 72.93 REMARK 500 2 SER A 109 97.04 -69.57 REMARK 500 2 HIS A 113 -18.28 71.60 REMARK 500 3 GLU A 28 75.27 62.00 REMARK 500 3 PRO A 29 92.31 -69.68 REMARK 500 3 TRP A 53 -53.28 72.71 REMARK 500 3 VAL A 54 -64.76 -90.61 REMARK 500 3 LYS A 66 -82.87 64.30 REMARK 500 3 GLN A 67 142.09 66.65 REMARK 500 3 LEU A 69 139.02 71.64 REMARK 500 3 HIS A 87 83.03 64.36 REMARK 500 3 ASP A 107 -167.14 -169.04 REMARK 500 4 PHE A 40 -7.66 72.72 REMARK 500 4 TRP A 53 -50.63 70.40 REMARK 500 4 VAL A 54 -80.96 -89.26 REMARK 500 4 ALA A 72 34.34 -169.55 REMARK 500 4 ASP A 107 -160.59 -79.93 REMARK 500 5 GLU A 28 94.56 -169.05 REMARK 500 5 PHE A 40 -14.49 73.20 REMARK 500 5 PHE A 41 77.61 53.46 REMARK 500 5 THR A 44 -79.53 -87.96 REMARK 500 5 MET A 45 -84.07 -130.34 REMARK 500 5 VAL A 54 -63.15 -101.68 REMARK 500 5 PRO A 70 105.77 -58.78 REMARK 500 5 ALA A 72 19.63 -150.90 REMARK 500 5 ALA A 108 -57.35 -126.98 REMARK 500 5 LEU A 110 12.07 -68.19 REMARK 500 6 GLU A 28 82.67 55.89 REMARK 500 6 PRO A 29 99.31 -60.67 REMARK 500 6 ASP A 43 30.82 -87.62 REMARK 500 6 THR A 44 -49.12 -144.22 REMARK 500 6 GLN A 52 -75.78 -56.67 REMARK 500 6 VAL A 54 -62.18 -98.12 REMARK 500 6 HIS A 87 107.93 75.90 REMARK 500 7 GLN A 22 -147.93 56.22 REMARK 500 7 HIS A 23 -40.32 76.91 REMARK 500 7 PHE A 40 -3.58 71.17 REMARK 500 7 THR A 44 -60.46 -100.77 REMARK 500 7 MET A 45 -69.97 -157.16 REMARK 500 7 VAL A 54 -70.40 -106.99 REMARK 500 REMARK 500 THIS ENTRY HAS 155 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ER225 RELATED DB: TARGETDB DBREF 2HGK A 1 109 UNP Q46919 YQCC_ECOLI 1 109 SEQADV 2HGK LEU A 110 UNP Q46919 EXPRESSION TAG SEQADV 2HGK GLU A 111 UNP Q46919 EXPRESSION TAG SEQADV 2HGK HIS A 112 UNP Q46919 EXPRESSION TAG SEQADV 2HGK HIS A 113 UNP Q46919 EXPRESSION TAG SEQADV 2HGK HIS A 114 UNP Q46919 EXPRESSION TAG SEQADV 2HGK HIS A 115 UNP Q46919 EXPRESSION TAG SEQADV 2HGK HIS A 116 UNP Q46919 EXPRESSION TAG SEQADV 2HGK HIS A 117 UNP Q46919 EXPRESSION TAG SEQRES 1 A 117 MET THR THR HIS ASP ARG VAL ARG LEU GLN LEU GLN ALA SEQRES 2 A 117 LEU GLU ALA LEU LEU ARG GLU HIS GLN HIS TRP ARG ASN SEQRES 3 A 117 ASP GLU PRO GLN PRO HIS GLN PHE ASN SER THR GLN PRO SEQRES 4 A 117 PHE PHE MET ASP THR MET GLU PRO LEU GLU TRP LEU GLN SEQRES 5 A 117 TRP VAL LEU ILE PRO ARG MET HIS ASP LEU LEU ASP ASN SEQRES 6 A 117 LYS GLN PRO LEU PRO GLY ALA PHE ALA VAL ALA PRO TYR SEQRES 7 A 117 TYR GLU MET ALA LEU ALA THR ASP HIS PRO GLN ARG ALA SEQRES 8 A 117 LEU ILE LEU ALA GLU LEU GLU LYS LEU ASP ALA LEU PHE SEQRES 9 A 117 ALA ASP ASP ALA SER LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 THR A 2 HIS A 21 1 20 HELIX 2 2 GLN A 30 PHE A 34 5 5 HELIX 3 3 PRO A 47 GLN A 52 1 6 HELIX 4 4 VAL A 54 ASN A 65 1 12 HELIX 5 5 VAL A 75 LEU A 83 1 9 HELIX 6 6 GLN A 89 ALA A 105 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1