HEADER HYDROLASE 28-JUN-06 2HHN TITLE CATHEPSIN S IN COMPLEX WITH NON COVALENT ARYLAMINOETHYL AMIDE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATHEPSIN S; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.22.27; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTSS; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS CATHEPSIN S, NONCOVALENT, INHIBITION, ARYLAMINOETHYL AMIDE, PROTEASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.SPRAGGON,M.HORNSBY,S.A.LESLEY,D.C.TULLY,J.L.HARRIS,D.S.KARENEWSKY, AUTHOR 2 R.KULATHILA,K.CLARK REVDAT 5 06-NOV-24 2HHN 1 REMARK REVDAT 4 30-AUG-23 2HHN 1 REMARK REVDAT 3 18-OCT-17 2HHN 1 REMARK REVDAT 2 24-FEB-09 2HHN 1 VERSN REVDAT 1 08-MAY-07 2HHN 0 JRNL AUTH D.C.TULLY,H.LIU,A.K.CHATTERJEE,P.B.ALPER,R.EPPLE, JRNL AUTH 2 J.A.WILLIAMS,M.J.ROBERTS,D.H.WOODMANSEE,B.T.MASICK, JRNL AUTH 3 C.TUMANUT,J.LI,G.SPRAGGON,M.HORNSBY,J.CHANG,T.TUNTLAND, JRNL AUTH 4 T.HOLLENBECK,P.GORDON,J.L.HARRIS,D.S.KARANEWSKY JRNL TITL SYNTHESIS AND SAR OF ARYLAMINOETHYL AMIDES AS NONCOVALENT JRNL TITL 2 INHIBITORS OF CATHEPSIN S: P3 CYCLIC ETHERS JRNL REF BIOORG.MED.CHEM.LETT. V. 16 5112 2006 JRNL REFN ISSN 0960-894X JRNL PMID 16876402 JRNL DOI 10.1016/J.BMCL.2006.07.033 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.KLEANTHOUS,U.C.KUHLMANN,A.J.POMMER,N.FERGUSON,S.E.RADFORD, REMARK 1 AUTH 2 G.R.MOORE,R.JAMES,A.M.HEMMINGS REMARK 1 TITL STRUCTURAL AND MECHANISTIC BASIS OF IMMUNITY TOWARDS REMARK 1 TITL 2 ENDONUCLEASE COLICINS REMARK 1 REF NAT.STRUCT.MOL.BIOL. V. 6 243 1999 REMARK 1 REFN ISSN 1545-9993 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 84.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 73915 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3951 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4149 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 207 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3396 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 591 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20000 REMARK 3 B22 (A**2) : -0.20000 REMARK 3 B33 (A**2) : 0.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.067 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.184 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3635 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3073 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4934 ; 1.422 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7203 ; 0.768 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 449 ; 5.542 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;37.740 ;24.268 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 579 ;11.112 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.912 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 496 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4092 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 764 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 840 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3515 ; 0.194 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1879 ; 0.196 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2026 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 491 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.599 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 51 ; 0.195 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 43 ; 0.160 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2777 ; 1.352 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 919 ; 0.281 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3511 ; 1.605 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1758 ; 3.396 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1418 ; 4.703 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 THE DENSITY FOR CHAIN A IS TOO WEAK TO RELIABLY PLACE THE LIGAND REMARK 3 (A LOW OCCUPANCY REMARK 3 LIGAND). FOR CHAIN B ALL ATOMS ARE PRESENT BUT DENSITY FOR THE REMARK 3 4-(TRIFLUOROMETHOXY)PHENYL AMINO GROUP IS LARGELY MISSING. THOSE REMARK 3 ATOMS HAVE BEEN LABELLED AS OCCUPANCY 0.00 AND ARE INCLUDED ON FOR REMARK 3 COMPARISON WITH 2HH5 STRUCTURE. REMARK 4 REMARK 4 2HHN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038356. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-AUG-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73915 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 84.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 3.540 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50900 REMARK 200 R SYM FOR SHELL (I) : 0.50900 REMARK 200 FOR SHELL : 2.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RIGID BODY REFINEMENT REMARK 200 SOFTWARE USED: DIFFERENCE FOURIER REMARK 200 STARTING MODEL: 2F1G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG-8000, 0.4M LITHIUM SULFATE, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.20150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.60075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 112.80225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.20150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 112.80225 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 37.60075 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE NATURAL STATE OF THE MOLECULE IS A MONOMER - THERE ARE REMARK 300 TWO MOLECULES OF CATHEPSIN S IN THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -120.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 85.53200 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 75.20150 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -118.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 85.53200 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 75.20150 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 37.60075 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 85.53200 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 37.60075 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 85.53200 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 75.20150 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1132 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1168 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN B -2 REMARK 465 ARG B -1 REMARK 465 ILE B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A -2 CG OD1 ND2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 HIS A 205 ND1 CD2 CE1 NE2 REMARK 480 HIS B 205 ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 126 O HOH B 1188 2.02 REMARK 500 N ASN A -2 O HOH A 1249 2.07 REMARK 500 O HOH B 1125 O HOH B 1173 2.08 REMARK 500 O HOH A 1109 O HOH A 1247 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 205 CG HIS A 205 CD2 0.166 REMARK 500 HIS A 205 CG HIS A 205 ND1 -0.265 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 205 CB - CG - CD2 ANGL. DEV. = -20.8 DEGREES REMARK 500 HIS A 205 CB - CG - ND1 ANGL. DEV. = 15.9 DEGREES REMARK 500 HIS A 205 CG - CD2 - NE2 ANGL. DEV. = -9.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 21 37.33 -91.06 REMARK 500 SER A 21 33.04 -87.60 REMARK 500 THR A 58 -126.97 -113.83 REMARK 500 THR B 58 -129.09 -115.09 REMARK 500 ARG B 141 49.24 -88.99 REMARK 500 ASN B 163 -1.07 -149.58 REMARK 500 LYS B 202 51.52 -119.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 GNQ B 901 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNQ B 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HH5 RELATED DB: PDB REMARK 900 A CO-CRYSTAL STRUCTURE OF THE ARYLAMINOETHYL AMIDE IN H3 SPACEGROUP REMARK 900 RELATED ID: 2F1G RELATED DB: PDB DBREF 2HHN A -2 217 UNP P25774 CATS_HUMAN 112 331 DBREF 2HHN B -2 217 UNP P25774 CATS_HUMAN 112 331 SEQRES 1 A 220 ASN ARG ILE LEU PRO ASP SER VAL ASP TRP ARG GLU LYS SEQRES 2 A 220 GLY CYS VAL THR GLU VAL LYS TYR GLN GLY SER CYS GLY SEQRES 3 A 220 ALA CYS TRP ALA PHE SER ALA VAL GLY ALA LEU GLU ALA SEQRES 4 A 220 GLN LEU LYS LEU LYS THR GLY LYS LEU VAL SER LEU SER SEQRES 5 A 220 ALA GLN ASN LEU VAL ASP CYS SER THR GLU LYS TYR GLY SEQRES 6 A 220 ASN LYS GLY CYS ASN GLY GLY PHE MET THR THR ALA PHE SEQRES 7 A 220 GLN TYR ILE ILE ASP ASN LYS GLY ILE ASP SER ASP ALA SEQRES 8 A 220 SER TYR PRO TYR LYS ALA MET ASP GLN LYS CYS GLN TYR SEQRES 9 A 220 ASP SER LYS TYR ARG ALA ALA THR CYS SER LYS TYR THR SEQRES 10 A 220 GLU LEU PRO TYR GLY ARG GLU ASP VAL LEU LYS GLU ALA SEQRES 11 A 220 VAL ALA ASN LYS GLY PRO VAL SER VAL GLY VAL ASP ALA SEQRES 12 A 220 ARG HIS PRO SER PHE PHE LEU TYR ARG SER GLY VAL TYR SEQRES 13 A 220 TYR GLU PRO SER CYS THR GLN ASN VAL ASN HIS GLY VAL SEQRES 14 A 220 LEU VAL VAL GLY TYR GLY ASP LEU ASN GLY LYS GLU TYR SEQRES 15 A 220 TRP LEU VAL LYS ASN SER TRP GLY HIS ASN PHE GLY GLU SEQRES 16 A 220 GLU GLY TYR ILE ARG MET ALA ARG ASN LYS GLY ASN HIS SEQRES 17 A 220 CYS GLY ILE ALA SER PHE PRO SER TYR PRO GLU ILE SEQRES 1 B 220 ASN ARG ILE LEU PRO ASP SER VAL ASP TRP ARG GLU LYS SEQRES 2 B 220 GLY CYS VAL THR GLU VAL LYS TYR GLN GLY SER CYS GLY SEQRES 3 B 220 ALA CYS TRP ALA PHE SER ALA VAL GLY ALA LEU GLU ALA SEQRES 4 B 220 GLN LEU LYS LEU LYS THR GLY LYS LEU VAL SER LEU SER SEQRES 5 B 220 ALA GLN ASN LEU VAL ASP CYS SER THR GLU LYS TYR GLY SEQRES 6 B 220 ASN LYS GLY CYS ASN GLY GLY PHE MET THR THR ALA PHE SEQRES 7 B 220 GLN TYR ILE ILE ASP ASN LYS GLY ILE ASP SER ASP ALA SEQRES 8 B 220 SER TYR PRO TYR LYS ALA MET ASP GLN LYS CYS GLN TYR SEQRES 9 B 220 ASP SER LYS TYR ARG ALA ALA THR CYS SER LYS TYR THR SEQRES 10 B 220 GLU LEU PRO TYR GLY ARG GLU ASP VAL LEU LYS GLU ALA SEQRES 11 B 220 VAL ALA ASN LYS GLY PRO VAL SER VAL GLY VAL ASP ALA SEQRES 12 B 220 ARG HIS PRO SER PHE PHE LEU TYR ARG SER GLY VAL TYR SEQRES 13 B 220 TYR GLU PRO SER CYS THR GLN ASN VAL ASN HIS GLY VAL SEQRES 14 B 220 LEU VAL VAL GLY TYR GLY ASP LEU ASN GLY LYS GLU TYR SEQRES 15 B 220 TRP LEU VAL LYS ASN SER TRP GLY HIS ASN PHE GLY GLU SEQRES 16 B 220 GLU GLY TYR ILE ARG MET ALA ARG ASN LYS GLY ASN HIS SEQRES 17 B 220 CYS GLY ILE ALA SER PHE PRO SER TYR PRO GLU ILE HET SO4 A 601 5 HET SO4 A 603 5 HET SO4 A1001 5 HET SO4 A1002 5 HET GNQ B 901 39 HETNAM SO4 SULFATE ION HETNAM GNQ N-[(1R)-1-[(BENZYLSULFONYL)METHYL]-2-{[(1S)-1-METHYL-2- HETNAM 2 GNQ {[4-(TRIFLUOROMETHOXY)PHENYL]AMINO}ETHYL]AMINO}-2- HETNAM 3 GNQ OXOETHYL]MORPHOLINE-4-CARBOXAMIDE FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 GNQ C25 H31 F3 N4 O6 S FORMUL 8 HOH *591(H2 O) HELIX 1 1 ARG A 8 GLY A 11 5 4 HELIX 2 2 ALA A 24 GLY A 43 1 20 HELIX 3 3 SER A 49 SER A 57 1 9 HELIX 4 4 THR A 58 GLY A 62 5 5 HELIX 5 5 LYS A 64 GLY A 68 5 5 HELIX 6 6 PHE A 70 LYS A 82 1 13 HELIX 7 7 ASP A 102 LYS A 104 5 3 HELIX 8 8 ARG A 120 LYS A 131 1 12 HELIX 9 9 HIS A 142 TYR A 148 1 7 HELIX 10 10 ASN A 204 ILE A 208 5 5 HELIX 11 11 ARG B 8 GLY B 11 5 4 HELIX 12 12 ALA B 24 GLY B 43 1 20 HELIX 13 13 SER B 49 SER B 57 1 9 HELIX 14 14 THR B 58 GLY B 62 5 5 HELIX 15 15 LYS B 64 GLY B 68 5 5 HELIX 16 16 PHE B 70 LYS B 82 1 13 HELIX 17 17 ASP B 102 LYS B 104 5 3 HELIX 18 18 ARG B 120 LYS B 131 1 12 HELIX 19 19 HIS B 142 LEU B 147 1 6 HELIX 20 20 ASN B 204 ILE B 208 5 5 SHEET 1 A 3 VAL A 5 ASP A 6 0 SHEET 2 A 3 HIS A 164 LEU A 174 -1 O TYR A 171 N VAL A 5 SHEET 3 A 3 VAL A 134 VAL A 138 -1 N VAL A 134 O VAL A 168 SHEET 1 B 5 VAL A 5 ASP A 6 0 SHEET 2 B 5 HIS A 164 LEU A 174 -1 O TYR A 171 N VAL A 5 SHEET 3 B 5 LYS A 177 LYS A 183 -1 O LYS A 183 N LEU A 167 SHEET 4 B 5 TYR A 195 ALA A 199 -1 O MET A 198 N TRP A 180 SHEET 5 B 5 VAL A 152 TYR A 153 1 N TYR A 153 O ARG A 197 SHEET 1 C 2 ILE A 84 ASP A 85 0 SHEET 2 C 2 ARG A 106 ALA A 108 -1 O ALA A 107 N ILE A 84 SHEET 1 D 2 LYS A 112 GLU A 115 0 SHEET 2 D 2 SER A 213 GLU A 216 -1 O GLU A 216 N LYS A 112 SHEET 1 E 3 VAL B 5 ASP B 6 0 SHEET 2 E 3 HIS B 164 LEU B 174 -1 O TYR B 171 N VAL B 5 SHEET 3 E 3 VAL B 134 VAL B 138 -1 N VAL B 134 O VAL B 168 SHEET 1 F 5 VAL B 5 ASP B 6 0 SHEET 2 F 5 HIS B 164 LEU B 174 -1 O TYR B 171 N VAL B 5 SHEET 3 F 5 LYS B 177 LYS B 183 -1 O LYS B 183 N LEU B 167 SHEET 4 F 5 TYR B 195 ALA B 199 -1 O MET B 198 N TRP B 180 SHEET 5 F 5 VAL B 152 TYR B 153 1 N TYR B 153 O ARG B 197 SHEET 1 G 2 ILE B 84 ASP B 85 0 SHEET 2 G 2 ARG B 106 ALA B 108 -1 O ALA B 107 N ILE B 84 SHEET 1 H 2 LYS B 112 GLU B 115 0 SHEET 2 H 2 SER B 213 GLU B 216 -1 O TYR B 214 N THR B 114 SSBOND 1 CYS A 22 CYS A 66 1555 1555 2.07 SSBOND 2 CYS A 56 CYS A 99 1555 1555 2.09 SSBOND 3 CYS A 158 CYS A 206 1555 1555 2.02 SSBOND 4 CYS B 22 CYS B 66 1555 1555 2.06 SSBOND 5 CYS B 56 CYS B 99 1555 1555 2.09 SSBOND 6 CYS B 158 CYS B 206 1555 1555 2.03 SITE 1 AC1 8 ARG A -1 ARG A 120 ASP A 122 VAL A 123 SITE 2 AC1 8 HOH A1071 HOH A1090 HOH A1257 HOH A1265 SITE 1 AC2 6 TYR A 18 GLY A 20 HOH A1082 HOH A1270 SITE 2 AC2 6 LYS B 10 HOH B1139 SITE 1 AC3 6 TYR A 18 GLY A 187 HIS A 188 HOH A1088 SITE 2 AC3 6 HOH A1296 LYS B 44 SITE 1 AC4 7 SER A 103 ARG A 106 HOH A1031 HOH A1096 SITE 2 AC4 7 HOH A1123 HOH A1205 HOH A1210 SITE 1 AC5 15 GLY B 23 CYS B 25 TRP B 26 GLY B 62 SITE 2 AC5 15 ASN B 67 GLY B 68 GLY B 69 PHE B 70 SITE 3 AC5 15 MET B 71 GLY B 137 VAL B 162 ASN B 163 SITE 4 AC5 15 HIS B 164 PHE B 211 HOH B1086 CRYST1 85.532 85.532 150.403 90.00 90.00 90.00 P 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011692 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011692 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006649 0.00000