HEADER OXIDOREDUCTASE 28-JUN-06 2HHZ TITLE CRYSTAL STRUCTURE OF A PYRIDOXAMINE 5'-PHOSPHATE OXIDASE-RELATED TITLE 2 PROTEIN (SSUIDRAFT_2804) FROM STREPTOCOCCUS SUIS 89/1591 AT 2.00 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRIDOXAMINE 5'-PHOSPHATE OXIDASE-RELATED; COMPND 3 CHAIN: A; COMPND 4 EC: 1.4.3.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS SUIS; SOURCE 3 ORGANISM_TAXID: 286604; SOURCE 4 STRAIN: 89/1591; SOURCE 5 GENE: ZP_00875725.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 25-JAN-23 2HHZ 1 REMARK SEQADV LINK REVDAT 5 18-OCT-17 2HHZ 1 REMARK REVDAT 4 13-JUL-11 2HHZ 1 VERSN REVDAT 3 23-MAR-11 2HHZ 1 TITLE KEYWDS REVDAT 2 24-FEB-09 2HHZ 1 VERSN REVDAT 1 15-AUG-06 2HHZ 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PYRIDOXAMINE 5'-PHOSPHATE JRNL TITL 2 OXIDASE-RELATED (ZP_00875725.1) FROM STREPTOCOCCUS SUIS JRNL TITL 3 89-1591 AT 2.00 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 10536 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 503 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 685 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1101 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 63 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 40.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.21000 REMARK 3 B22 (A**2) : -1.21000 REMARK 3 B33 (A**2) : 2.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.183 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.161 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.134 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1145 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 733 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1553 ; 1.546 ; 1.928 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1781 ; 0.881 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 140 ; 6.344 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 55 ;36.759 ;23.455 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 179 ;13.115 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;23.648 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 170 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1281 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 248 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 204 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 715 ; 0.206 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 549 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 600 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 47 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.228 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 24 ; 0.381 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.184 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 755 ; 2.361 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 285 ; 0.509 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1118 ; 3.449 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 492 ; 5.491 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 433 ; 6.702 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 106 REMARK 3 RESIDUE RANGE : A 112 A 139 REMARK 3 RESIDUE RANGE : A 145 A 149 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2351 35.9856 25.6993 REMARK 3 T TENSOR REMARK 3 T11: -0.1453 T22: -0.0929 REMARK 3 T33: -0.1219 T12: -0.0025 REMARK 3 T13: -0.0020 T23: 0.0650 REMARK 3 L TENSOR REMARK 3 L11: 2.7930 L22: 3.9676 REMARK 3 L33: 1.9420 L12: -0.2817 REMARK 3 L13: 0.3700 L23: 0.0505 REMARK 3 S TENSOR REMARK 3 S11: -0.1713 S12: -0.1685 S13: 0.0020 REMARK 3 S21: -0.0192 S22: 0.1445 S23: 0.6643 REMARK 3 S31: -0.0759 S32: -0.4230 S33: 0.0268 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. RESIDUES 107-111 AND 140-144 ARE DISORDERED AND NOT INCLUDED REMARK 3 IN THE MODEL. REMARK 3 4. CL, ACT, PO4 MOLECULES FROM THE CRYSTALLIZATION SOLUTION ARE REMARK 3 MODELED. REMARK 3 5. THERE ARE UNMODELED DENSITY NEAR RESIDUES A122 AND A133. REMARK 3 6. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 4 REMARK 4 2HHZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038367. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97934, 0.97915 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10580 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 29.198 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.72600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40.0% PEG-400, 0.1M ACETATE PH 4.5, REMARK 280 VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.20000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.50000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.80000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.50000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 14.60000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.50000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.50000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 43.80000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.50000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.50000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 14.60000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 29.20000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 58.40000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 162 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 169 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASP A 107 REMARK 465 GLU A 108 REMARK 465 SER A 109 REMARK 465 SER A 110 REMARK 465 ASP A 111 REMARK 465 GLN A 140 REMARK 465 GLY A 141 REMARK 465 GLU A 142 REMARK 465 HIS A 143 REMARK 465 SER A 144 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CD CE NZ REMARK 470 LYS A 14 CD CE NZ REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 GLU A 69 OE1 OE2 REMARK 470 GLU A 70 CG CD OE1 OE2 REMARK 470 ASP A 97 CG OD1 OD2 REMARK 470 TYR A 100 CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 145 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 147 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 14 -31.94 71.59 REMARK 500 PRO A 48 156.93 -49.64 REMARK 500 ALA A 96 -136.68 53.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 152 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 367043 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE REMARK 999 TARGET SEQUENCE. DBREF 2HHZ A 1 149 UNP Q2ZZ07 Q2ZZ07_STRSU 1 149 SEQADV 2HHZ GLY A 0 UNP Q2ZZ07 EXPRESSION TAG SEQADV 2HHZ MSE A 1 UNP Q2ZZ07 MET 1 MODIFIED RESIDUE SEQADV 2HHZ MSE A 7 UNP Q2ZZ07 MET 7 MODIFIED RESIDUE SEQADV 2HHZ MSE A 13 UNP Q2ZZ07 MET 13 MODIFIED RESIDUE SEQADV 2HHZ MSE A 45 UNP Q2ZZ07 MET 45 MODIFIED RESIDUE SEQADV 2HHZ MSE A 57 UNP Q2ZZ07 MET 57 MODIFIED RESIDUE SEQADV 2HHZ MSE A 64 UNP Q2ZZ07 MET 64 MODIFIED RESIDUE SEQADV 2HHZ MSE A 113 UNP Q2ZZ07 MET 113 MODIFIED RESIDUE SEQRES 1 A 150 GLY MSE GLU LEU LYS ASP ILE MSE HIS ILE LEU GLU ASP SEQRES 2 A 150 MSE LYS VAL GLY VAL PHE ALA THR LEU ASP GLU TYR GLY SEQRES 3 A 150 ASN PRO HIS ALA ARG HIS ALA HIS ILE THR ALA ALA ASN SEQRES 4 A 150 GLU GLU GLY ILE PHE PHE MSE THR SER PRO GLU THR HIS SEQRES 5 A 150 PHE TYR ASP GLN LEU MSE GLY ASP GLN ARG VAL ALA MSE SEQRES 6 A 150 THR ALA ILE SER GLU GLU GLY TYR LEU ILE GLN VAL VAL SEQRES 7 A 150 ARG VAL GLU GLY THR ALA ARG PRO VAL GLU ASN ASP TYR SEQRES 8 A 150 LEU LYS THR VAL PHE ALA ASP ASN PRO TYR TYR GLN HIS SEQRES 9 A 150 ILE TYR LYS ASP GLU SER SER ASP THR MSE GLN VAL PHE SEQRES 10 A 150 GLN ILE TYR ALA GLY HIS GLY PHE TYR HIS SER LEU THR SEQRES 11 A 150 GLN GLY HIS LYS TYR ILE PHE SER ILE GLY GLN GLY GLU SEQRES 12 A 150 HIS SER GLU VAL ARG ALA LEU MODRES 2HHZ MSE A 1 MET SELENOMETHIONINE MODRES 2HHZ MSE A 7 MET SELENOMETHIONINE MODRES 2HHZ MSE A 13 MET SELENOMETHIONINE MODRES 2HHZ MSE A 45 MET SELENOMETHIONINE MODRES 2HHZ MSE A 57 MET SELENOMETHIONINE MODRES 2HHZ MSE A 64 MET SELENOMETHIONINE MODRES 2HHZ MSE A 113 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 7 8 HET MSE A 13 8 HET MSE A 45 8 HET MSE A 57 8 HET MSE A 64 8 HET MSE A 113 8 HET PO4 A 150 5 HET CL A 151 1 HET ACT A 152 4 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 PO4 O4 P 3- FORMUL 3 CL CL 1- FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 HOH *63(H2 O) HELIX 1 1 GLU A 2 MSE A 13 1 12 HELIX 2 2 THR A 50 ASP A 59 1 10 HELIX 3 3 GLU A 87 ALA A 96 1 10 HELIX 4 4 ASN A 98 TYR A 105 5 8 HELIX 5 5 THR A 129 GLY A 131 5 3 SHEET 1 A 9 VAL A 146 ALA A 148 0 SHEET 2 A 9 HIS A 132 ILE A 138 -1 N ILE A 135 O ARG A 147 SHEET 3 A 9 GLN A 114 SER A 127 -1 N GLY A 123 O PHE A 136 SHEET 4 A 9 GLN A 75 VAL A 86 -1 N VAL A 76 O HIS A 126 SHEET 5 A 9 ARG A 61 SER A 68 -1 N VAL A 62 O GLY A 81 SHEET 6 A 9 VAL A 15 LEU A 21 -1 N VAL A 17 O THR A 65 SHEET 7 A 9 PRO A 27 ASN A 38 -1 O ARG A 30 N PHE A 18 SHEET 8 A 9 GLY A 41 THR A 46 -1 O PHE A 43 N ALA A 36 SHEET 9 A 9 GLN A 114 SER A 127 -1 O ILE A 118 N ILE A 42 LINK C MSE A 1 N GLU A 2 1555 1555 1.33 LINK C ILE A 6 N MSE A 7 1555 1555 1.32 LINK C MSE A 7 N HIS A 8 1555 1555 1.32 LINK C ASP A 12 N MSE A 13 1555 1555 1.34 LINK C MSE A 13 N LYS A 14 1555 1555 1.33 LINK C PHE A 44 N MSE A 45 1555 1555 1.32 LINK C MSE A 45 N THR A 46 1555 1555 1.33 LINK C LEU A 56 N MSE A 57 1555 1555 1.32 LINK C MSE A 57 N GLY A 58 1555 1555 1.33 LINK C ALA A 63 N MSE A 64 1555 1555 1.33 LINK C MSE A 64 N THR A 65 1555 1555 1.33 LINK C THR A 112 N MSE A 113 1555 1555 1.33 LINK C MSE A 113 N GLN A 114 1555 1555 1.33 SITE 1 AC1 6 ARG A 30 HIS A 51 PHE A 52 ARG A 78 SITE 2 AC1 6 HOH A 170 HOH A 188 SITE 1 AC2 4 HIS A 31 THR A 65 VAL A 76 ARG A 78 SITE 1 AC3 3 HIS A 31 HOH A 195 HOH A 197 CRYST1 71.000 71.000 58.400 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014090 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014090 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017120 0.00000 HETATM 1 N MSE A 1 12.883 31.492 6.880 1.00 91.17 N HETATM 2 CA MSE A 1 12.879 31.603 8.373 1.00 92.18 C HETATM 3 C MSE A 1 13.416 32.976 8.814 1.00 86.08 C HETATM 4 O MSE A 1 14.291 33.551 8.162 1.00 86.02 O HETATM 5 CB MSE A 1 13.676 30.456 9.020 1.00 91.31 C HETATM 6 CG MSE A 1 13.731 30.524 10.567 1.00 92.74 C HETATM 7 SE MSE A 1 13.473 28.826 11.573 0.75106.53 SE HETATM 8 CE MSE A 1 11.840 28.106 10.660 1.00101.39 C