HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-JUN-06 2HI1 TITLE THE STRUCTURE OF A PUTATIVE 4-HYDROXYTHREONINE-4-PHOSPHATE TITLE 2 DEHYDROGENASE FROM SALMONELLA TYPHIMURIUM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-HYDROXYTHREONINE-4-PHOSPHATE DEHYDROGENASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 4-(PHOSPHOHYDROXY)-L-THREONINE DEHYDROGENASE 2; COMPND 5 EC: 1.1.1.262; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 99287; SOURCE 4 STRAIN: LT2; SOURCE 5 GENE: PDXA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS PYRIDOXAL PHOSPHATE BIOSYNTHESIS, SALMONELLA TYPHIMURIUM, 4- KEYWDS 2 HYDROXYTHREONINE-4-PHOSPHATE DEHYDROGENASE, STRUCTURAL GENOMICS, KEYWDS 3 PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 4 GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,P.QUARTEY,D.HOLZLE,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 4 13-JUL-11 2HI1 1 VERSN REVDAT 3 24-FEB-09 2HI1 1 VERSN REVDAT 2 01-AUG-06 2HI1 1 REMARK REVDAT 1 25-JUL-06 2HI1 0 JRNL AUTH M.E.CUFF,P.QUARTEY,D.HOLZLE,A.JOACHIMIAK JRNL TITL THE STRUCTURE OF A PUTATIVE 4-HYDROXYTHREONINE-4-PHOSPHATE JRNL TITL 2 DEHYDROGENASE FROM SALMONELLA TYPHIMURIUM. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 3 NUMBER OF REFLECTIONS : 28553 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1559 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1567 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4861 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 422 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.13000 REMARK 3 B22 (A**2) : 4.51000 REMARK 3 B33 (A**2) : -2.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.386 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.278 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.196 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.301 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4983 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6774 ; 1.459 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 647 ; 6.067 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 192 ;37.680 ;23.542 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 832 ;17.189 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;20.648 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 804 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3698 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2490 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3404 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 314 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.193 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.141 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3317 ; 0.808 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5174 ; 1.220 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1859 ; 1.819 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1599 ; 2.788 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 155 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8147 81.4239 -6.8640 REMARK 3 T TENSOR REMARK 3 T11: -0.2250 T22: -0.1714 REMARK 3 T33: -0.1863 T12: 0.0282 REMARK 3 T13: -0.0050 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 1.3517 L22: 1.0972 REMARK 3 L33: 3.1196 L12: 0.2763 REMARK 3 L13: -0.0113 L23: -0.2946 REMARK 3 S TENSOR REMARK 3 S11: 0.0849 S12: 0.0072 S13: 0.0496 REMARK 3 S21: -0.0378 S22: -0.0133 S23: 0.0058 REMARK 3 S31: -0.2294 S32: -0.0855 S33: -0.0716 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 156 A 327 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0346 71.3577 17.5483 REMARK 3 T TENSOR REMARK 3 T11: -0.2239 T22: -0.1000 REMARK 3 T33: -0.1746 T12: -0.0519 REMARK 3 T13: -0.0079 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.4590 L22: 0.6761 REMARK 3 L33: 3.5864 L12: -0.1410 REMARK 3 L13: -0.3301 L23: -0.5652 REMARK 3 S TENSOR REMARK 3 S11: 0.0284 S12: 0.0461 S13: -0.0850 REMARK 3 S21: 0.0696 S22: -0.0270 S23: 0.0471 REMARK 3 S31: 0.1929 S32: -0.4836 S33: -0.0014 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 155 REMARK 3 ORIGIN FOR THE GROUP (A): 28.6504 56.3979 55.1898 REMARK 3 T TENSOR REMARK 3 T11: -0.2819 T22: 0.0785 REMARK 3 T33: -0.0822 T12: 0.0024 REMARK 3 T13: 0.0477 T23: 0.2094 REMARK 3 L TENSOR REMARK 3 L11: 2.6248 L22: 3.0693 REMARK 3 L33: 4.1212 L12: -0.0738 REMARK 3 L13: 0.3023 L23: -0.8030 REMARK 3 S TENSOR REMARK 3 S11: 0.0268 S12: -0.6673 S13: -0.7192 REMARK 3 S21: 0.3856 S22: -0.0151 S23: 0.2332 REMARK 3 S31: -0.0019 S32: -0.0990 S33: -0.0117 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 156 B 327 REMARK 3 ORIGIN FOR THE GROUP (A): 28.5763 70.6486 33.1690 REMARK 3 T TENSOR REMARK 3 T11: -0.2340 T22: -0.1692 REMARK 3 T33: -0.2318 T12: 0.0058 REMARK 3 T13: -0.0043 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 2.2924 L22: 1.2676 REMARK 3 L33: 2.7343 L12: -0.4389 REMARK 3 L13: -0.0465 L23: -1.0270 REMARK 3 S TENSOR REMARK 3 S11: -0.0343 S12: -0.1436 S13: -0.0861 REMARK 3 S21: -0.0599 S22: -0.0127 S23: 0.0622 REMARK 3 S31: -0.0080 S32: 0.2131 S33: 0.0471 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HI1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-06. REMARK 100 THE RCSB ID CODE IS RCSB038369. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918, 0.97932 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28553 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 39.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41100 REMARK 200 FOR SHELL : 1.198 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, AUTOSHARP, ARP/WARP, COOT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NA FORMATE, 20% PEG 3350, PH 7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.83000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.66400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.44600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.66400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.83000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.44600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 AUTHOR STATES THAT BIOLOGICAL UNIT REMARK 300 FOR THE PROTEIN IS NOT YET KNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 PHE A 280 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 GLU B 2 REMARK 465 GLU B 216 REMARK 465 ASN B 217 REMARK 465 GLY B 218 REMARK 465 TYR B 281 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 249 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG B 226 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 226 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 34 78.94 -64.17 REMARK 500 ILE A 52 -71.82 -64.24 REMARK 500 ASP A 282 33.65 -143.81 REMARK 500 LYS B 4 116.47 -25.52 REMARK 500 PRO B 34 82.57 -64.31 REMARK 500 ASP B 78 89.62 -54.77 REMARK 500 HIS B 169 -45.03 63.05 REMARK 500 ALA B 214 60.51 34.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 282 GLY A 283 -36.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP A 282 23.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 526 DISTANCE = 5.14 ANGSTROMS REMARK 525 HOH A 543 DISTANCE = 5.22 ANGSTROMS REMARK 525 HOH A 546 DISTANCE = 6.15 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC22899 RELATED DB: TARGETDB DBREF 2HI1 A 1 327 UNP P58718 PDXA2_SALTY 1 327 DBREF 2HI1 B 1 327 UNP P58718 PDXA2_SALTY 1 327 SEQADV 2HI1 SER A -2 UNP P58718 CLONING ARTIFACT SEQADV 2HI1 ASN A -1 UNP P58718 CLONING ARTIFACT SEQADV 2HI1 ALA A 0 UNP P58718 CLONING ARTIFACT SEQADV 2HI1 MSE A 1 UNP P58718 MET 1 MODIFIED RESIDUE SEQADV 2HI1 MSE A 10 UNP P58718 MET 10 MODIFIED RESIDUE SEQADV 2HI1 MSE A 154 UNP P58718 MET 154 MODIFIED RESIDUE SEQADV 2HI1 MSE A 240 UNP P58718 MET 240 MODIFIED RESIDUE SEQADV 2HI1 MSE A 262 UNP P58718 MET 262 MODIFIED RESIDUE SEQADV 2HI1 MSE A 266 UNP P58718 MET 266 MODIFIED RESIDUE SEQADV 2HI1 MSE A 316 UNP P58718 MET 316 MODIFIED RESIDUE SEQADV 2HI1 MSE A 324 UNP P58718 MET 324 MODIFIED RESIDUE SEQADV 2HI1 SER B -2 UNP P58718 CLONING ARTIFACT SEQADV 2HI1 ASN B -1 UNP P58718 CLONING ARTIFACT SEQADV 2HI1 ALA B 0 UNP P58718 CLONING ARTIFACT SEQADV 2HI1 MSE B 1 UNP P58718 MET 1 MODIFIED RESIDUE SEQADV 2HI1 MSE B 10 UNP P58718 MET 10 MODIFIED RESIDUE SEQADV 2HI1 MSE B 154 UNP P58718 MET 154 MODIFIED RESIDUE SEQADV 2HI1 MSE B 240 UNP P58718 MET 240 MODIFIED RESIDUE SEQADV 2HI1 MSE B 262 UNP P58718 MET 262 MODIFIED RESIDUE SEQADV 2HI1 MSE B 266 UNP P58718 MET 266 MODIFIED RESIDUE SEQADV 2HI1 MSE B 316 UNP P58718 MET 316 MODIFIED RESIDUE SEQADV 2HI1 MSE B 324 UNP P58718 MET 324 MODIFIED RESIDUE SEQRES 1 A 330 SER ASN ALA MSE GLU THR LYS THR VAL ALA ILE THR MSE SEQRES 2 A 330 GLY ASP PRO ALA GLY ILE GLY PRO GLU ILE ILE VAL LYS SEQRES 3 A 330 ALA LEU SER GLU ASP GLY LEU ASN GLY ALA PRO LEU VAL SEQRES 4 A 330 VAL ILE GLY CYS LEU ALA THR LEU LYS ARG LEU GLN ALA SEQRES 5 A 330 LYS GLY ILE THR PRO ASN VAL GLU LEU ARG ALA ILE GLU SEQRES 6 A 330 ARG VAL ALA GLU ALA ARG PHE ALA PRO GLY ILE ILE HIS SEQRES 7 A 330 VAL ILE ASP GLU PRO LEU ALA GLN PRO GLU ALA LEU GLU SEQRES 8 A 330 ALA GLY LYS VAL GLN ALA GLN ALA GLY ASP LEU ALA TYR SEQRES 9 A 330 ARG CYS VAL LYS ARG ALA THR GLU LEU ALA LEU ARG GLY SEQRES 10 A 330 ASP VAL GLN ALA ILE ALA THR ALA PRO LEU ASN LYS GLU SEQRES 11 A 330 ALA LEU HIS LEU ALA GLY HIS ASN TYR PRO GLY HIS THR SEQRES 12 A 330 GLU LEU LEU ALA THR LEU THR HIS SER ARG ASP TYR ALA SEQRES 13 A 330 MSE VAL LEU TYR THR ASP LYS LEU LYS VAL ILE HIS VAL SEQRES 14 A 330 SER THR HIS ILE ALA LEU ARG LYS PHE LEU ASP THR LEU SEQRES 15 A 330 SER THR ALA ARG VAL GLU THR VAL ILE GLY ILE ALA ASP SEQRES 16 A 330 THR PHE LEU LYS ARG VAL GLY TYR VAL LYS PRO ARG ILE SEQRES 17 A 330 ALA VAL ALA GLY VAL ASN PRO HIS ALA GLY GLU ASN GLY SEQRES 18 A 330 LEU PHE GLY ASP GLU GLU THR ARG ILE LEU THR PRO ALA SEQRES 19 A 330 ILE THR ASP ALA ARG ALA LYS GLY MSE ASP VAL TYR GLY SEQRES 20 A 330 PRO CYS PRO PRO ASP THR VAL PHE LEU GLN ALA TYR GLU SEQRES 21 A 330 GLY GLN TYR ASP MSE VAL VAL ALA MSE TYR HIS ASP GLN SEQRES 22 A 330 GLY HIS ILE PRO LEU LYS LEU LEU GLY PHE TYR ASP GLY SEQRES 23 A 330 VAL ASN ILE THR ALA GLY LEU PRO PHE ILE ARG THR SER SEQRES 24 A 330 ALA ASP HIS GLY THR ALA PHE ASP ILE ALA TRP THR GLY SEQRES 25 A 330 LYS ALA LYS SER GLU SER MSE ALA VAL SER ILE LYS LEU SEQRES 26 A 330 ALA MSE GLN LEU ALA SEQRES 1 B 330 SER ASN ALA MSE GLU THR LYS THR VAL ALA ILE THR MSE SEQRES 2 B 330 GLY ASP PRO ALA GLY ILE GLY PRO GLU ILE ILE VAL LYS SEQRES 3 B 330 ALA LEU SER GLU ASP GLY LEU ASN GLY ALA PRO LEU VAL SEQRES 4 B 330 VAL ILE GLY CYS LEU ALA THR LEU LYS ARG LEU GLN ALA SEQRES 5 B 330 LYS GLY ILE THR PRO ASN VAL GLU LEU ARG ALA ILE GLU SEQRES 6 B 330 ARG VAL ALA GLU ALA ARG PHE ALA PRO GLY ILE ILE HIS SEQRES 7 B 330 VAL ILE ASP GLU PRO LEU ALA GLN PRO GLU ALA LEU GLU SEQRES 8 B 330 ALA GLY LYS VAL GLN ALA GLN ALA GLY ASP LEU ALA TYR SEQRES 9 B 330 ARG CYS VAL LYS ARG ALA THR GLU LEU ALA LEU ARG GLY SEQRES 10 B 330 ASP VAL GLN ALA ILE ALA THR ALA PRO LEU ASN LYS GLU SEQRES 11 B 330 ALA LEU HIS LEU ALA GLY HIS ASN TYR PRO GLY HIS THR SEQRES 12 B 330 GLU LEU LEU ALA THR LEU THR HIS SER ARG ASP TYR ALA SEQRES 13 B 330 MSE VAL LEU TYR THR ASP LYS LEU LYS VAL ILE HIS VAL SEQRES 14 B 330 SER THR HIS ILE ALA LEU ARG LYS PHE LEU ASP THR LEU SEQRES 15 B 330 SER THR ALA ARG VAL GLU THR VAL ILE GLY ILE ALA ASP SEQRES 16 B 330 THR PHE LEU LYS ARG VAL GLY TYR VAL LYS PRO ARG ILE SEQRES 17 B 330 ALA VAL ALA GLY VAL ASN PRO HIS ALA GLY GLU ASN GLY SEQRES 18 B 330 LEU PHE GLY ASP GLU GLU THR ARG ILE LEU THR PRO ALA SEQRES 19 B 330 ILE THR ASP ALA ARG ALA LYS GLY MSE ASP VAL TYR GLY SEQRES 20 B 330 PRO CYS PRO PRO ASP THR VAL PHE LEU GLN ALA TYR GLU SEQRES 21 B 330 GLY GLN TYR ASP MSE VAL VAL ALA MSE TYR HIS ASP GLN SEQRES 22 B 330 GLY HIS ILE PRO LEU LYS LEU LEU GLY PHE TYR ASP GLY SEQRES 23 B 330 VAL ASN ILE THR ALA GLY LEU PRO PHE ILE ARG THR SER SEQRES 24 B 330 ALA ASP HIS GLY THR ALA PHE ASP ILE ALA TRP THR GLY SEQRES 25 B 330 LYS ALA LYS SER GLU SER MSE ALA VAL SER ILE LYS LEU SEQRES 26 B 330 ALA MSE GLN LEU ALA MODRES 2HI1 MSE A 10 MET SELENOMETHIONINE MODRES 2HI1 MSE A 154 MET SELENOMETHIONINE MODRES 2HI1 MSE A 240 MET SELENOMETHIONINE MODRES 2HI1 MSE A 262 MET SELENOMETHIONINE MODRES 2HI1 MSE A 266 MET SELENOMETHIONINE MODRES 2HI1 MSE A 316 MET SELENOMETHIONINE MODRES 2HI1 MSE A 324 MET SELENOMETHIONINE MODRES 2HI1 MSE B 10 MET SELENOMETHIONINE MODRES 2HI1 MSE B 154 MET SELENOMETHIONINE MODRES 2HI1 MSE B 240 MET SELENOMETHIONINE MODRES 2HI1 MSE B 262 MET SELENOMETHIONINE MODRES 2HI1 MSE B 266 MET SELENOMETHIONINE MODRES 2HI1 MSE B 316 MET SELENOMETHIONINE MODRES 2HI1 MSE B 324 MET SELENOMETHIONINE HET MSE A 10 8 HET MSE A 154 8 HET MSE A 240 8 HET MSE A 262 8 HET MSE A 266 8 HET MSE A 316 8 HET MSE A 324 8 HET MSE B 10 8 HET MSE B 154 8 HET MSE B 240 8 HET MSE B 262 8 HET MSE B 266 8 HET MSE B 316 8 HET MSE B 324 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 HOH *422(H2 O) HELIX 1 1 ILE A 16 SER A 26 1 11 HELIX 2 2 CYS A 40 LYS A 50 1 11 HELIX 3 3 ARG A 63 ALA A 67 5 5 HELIX 4 4 GLN A 83 LEU A 87 5 5 HELIX 5 5 GLN A 93 ARG A 113 1 21 HELIX 6 6 ASN A 125 ALA A 132 1 8 HELIX 7 7 GLY A 138 THR A 147 1 10 HELIX 8 8 ALA A 171 LEU A 179 1 9 HELIX 9 9 SER A 180 VAL A 198 1 19 HELIX 10 10 ASN A 211 GLY A 215 5 5 HELIX 11 11 GLY A 221 ILE A 227 1 7 HELIX 12 12 ILE A 227 ALA A 237 1 11 HELIX 13 13 PRO A 247 GLU A 257 1 11 HELIX 14 14 TYR A 267 LEU A 278 1 12 HELIX 15 15 SER A 313 ALA A 327 1 15 HELIX 16 16 ILE B 16 GLU B 27 1 12 HELIX 17 17 CYS B 40 LYS B 50 1 11 HELIX 18 18 ARG B 63 ALA B 67 5 5 HELIX 19 19 GLN B 83 LEU B 87 5 5 HELIX 20 20 GLN B 93 GLY B 114 1 22 HELIX 21 21 ASN B 125 ALA B 132 1 8 HELIX 22 22 GLY B 138 THR B 147 1 10 HELIX 23 23 ALA B 171 THR B 178 1 8 HELIX 24 24 SER B 180 VAL B 198 1 19 HELIX 25 25 ASP B 222 ILE B 227 1 6 HELIX 26 26 ILE B 227 ALA B 237 1 11 HELIX 27 27 PRO B 247 GLY B 258 1 12 HELIX 28 28 TYR B 267 LEU B 278 1 12 HELIX 29 29 SER B 313 ALA B 327 1 15 SHEET 1 A12 GLU A 57 ILE A 61 0 SHEET 2 A12 ILE A 73 ASP A 78 1 O ILE A 74 N ARG A 59 SHEET 3 A12 LEU A 35 GLY A 39 1 N VAL A 37 O ILE A 77 SHEET 4 A12 VAL A 6 THR A 9 1 N ILE A 8 O ILE A 38 SHEET 5 A12 ALA A 118 THR A 121 1 O ALA A 118 N ALA A 7 SHEET 6 A12 ILE A 293 ALA A 297 1 O THR A 295 N THR A 121 SHEET 7 A12 VAL A 284 ALA A 288 -1 N ASN A 285 O SER A 296 SHEET 8 A12 ALA A 153 TYR A 157 -1 N VAL A 155 O ILE A 286 SHEET 9 A12 LYS A 162 HIS A 165 -1 O VAL A 163 N LEU A 156 SHEET 10 A12 MSE A 262 ALA A 265 1 O ALA A 265 N ILE A 164 SHEET 11 A12 ARG A 204 ALA A 208 1 N ALA A 206 O VAL A 264 SHEET 12 A12 ASP A 241 CYS A 246 1 O TYR A 243 N ILE A 205 SHEET 1 B12 GLU B 57 ALA B 60 0 SHEET 2 B12 ILE B 73 ASP B 78 1 O ILE B 74 N GLU B 57 SHEET 3 B12 LEU B 35 GLY B 39 1 N VAL B 37 O ILE B 77 SHEET 4 B12 VAL B 6 THR B 9 1 N ILE B 8 O ILE B 38 SHEET 5 B12 ALA B 118 THR B 121 1 O ALA B 118 N ALA B 7 SHEET 6 B12 ILE B 293 ALA B 297 1 O ILE B 293 N ILE B 119 SHEET 7 B12 VAL B 284 ALA B 288 -1 N THR B 287 O ARG B 294 SHEET 8 B12 ALA B 153 TYR B 157 -1 N ALA B 153 O ALA B 288 SHEET 9 B12 LYS B 162 HIS B 165 -1 O VAL B 163 N LEU B 156 SHEET 10 B12 MSE B 262 ALA B 265 1 O ALA B 265 N ILE B 164 SHEET 11 B12 ARG B 204 ALA B 208 1 N ALA B 206 O VAL B 264 SHEET 12 B12 ASP B 241 CYS B 246 1 O TYR B 243 N ILE B 205 LINK C THR A 9 N MSE A 10 1555 1555 1.33 LINK C MSE A 10 N GLY A 11 1555 1555 1.33 LINK C ALA A 153 N MSE A 154 1555 1555 1.33 LINK C MSE A 154 N VAL A 155 1555 1555 1.34 LINK C GLY A 239 N MSE A 240 1555 1555 1.33 LINK C MSE A 240 N ASP A 241 1555 1555 1.33 LINK C ASP A 261 N MSE A 262 1555 1555 1.34 LINK C MSE A 262 N VAL A 263 1555 1555 1.34 LINK C ALA A 265 N MSE A 266 1555 1555 1.32 LINK C MSE A 266 N TYR A 267 1555 1555 1.34 LINK C SER A 315 N MSE A 316 1555 1555 1.34 LINK C MSE A 316 N ALA A 317 1555 1555 1.33 LINK C ALA A 323 N MSE A 324 1555 1555 1.33 LINK C MSE A 324 N GLN A 325 1555 1555 1.33 LINK C THR B 9 N MSE B 10 1555 1555 1.33 LINK C MSE B 10 N GLY B 11 1555 1555 1.33 LINK C ALA B 153 N MSE B 154 1555 1555 1.33 LINK C MSE B 154 N VAL B 155 1555 1555 1.33 LINK C GLY B 239 N MSE B 240 1555 1555 1.34 LINK C MSE B 240 N ASP B 241 1555 1555 1.33 LINK C ASP B 261 N MSE B 262 1555 1555 1.33 LINK C MSE B 262 N VAL B 263 1555 1555 1.33 LINK C ALA B 265 N MSE B 266 1555 1555 1.33 LINK C MSE B 266 N TYR B 267 1555 1555 1.33 LINK C SER B 315 N MSE B 316 1555 1555 1.34 LINK C MSE B 316 N ALA B 317 1555 1555 1.33 LINK C ALA B 323 N MSE B 324 1555 1555 1.33 LINK C MSE B 324 N GLN B 325 1555 1555 1.33 CISPEP 1 GLY A 244 PRO A 245 0 3.90 CISPEP 2 GLY B 244 PRO B 245 0 2.56 CISPEP 3 ASP B 282 GLY B 283 0 -12.51 CRYST1 77.660 92.892 101.328 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012877 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010765 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009869 0.00000