HEADER HYDROLASE 30-JUN-06 2HJP TITLE CRYSTAL STRUCTURE OF PHOSPHONOPYRUVATE HYDROLASE COMPLEX WITH TITLE 2 PHOSPHONOPYRUVATE AND MG++ COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHONOPYRUVATE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VARIOVORAX SP.; SOURCE 3 ORGANISM_TAXID: 218557; SOURCE 4 STRAIN: PAL2; SOURCE 5 GENE: PPHA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3C KEYWDS PHOSPHONOPYRUVATE HYDROLASE, PHOSPHONOPYRUVATE, PHOSPORUS-CARBON BOND KEYWDS 2 CLEAVAGE, PEP MUTASE/ISOCITRATE LYASE SUPERFAMILY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.C.H.CHEN,O.HERZBERG REVDAT 6 03-APR-24 2HJP 1 REMARK REVDAT 5 14-FEB-24 2HJP 1 REMARK HETSYN REVDAT 4 29-JUL-20 2HJP 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 13-JUL-11 2HJP 1 VERSN REVDAT 2 24-FEB-09 2HJP 1 VERSN REVDAT 1 03-OCT-06 2HJP 0 JRNL AUTH C.C.H.CHEN,Y.HAN,W.NIU,A.N.KULAKOVA,A.HOWARD,J.P.QUINN, JRNL AUTH 2 D.DUNAWAY-MARIANO,O.HERZBERG JRNL TITL STRUCTURE AND KINETICS OF PHOSPHONOPYRUVATE HYDROLASE FROM JRNL TITL 2 VORIOVORAX SP. PAL2: NEW INSIGHT INTO THE DIVERGENCE OF JRNL TITL 3 CATALYSIS WITHIN THE PEP MUTASE/ISOCITRATE LYASE SUPERFAMILY JRNL REF BIOCHEMISTRY V. 45 11491 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16981709 JRNL DOI 10.1021/BI061208L REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22181 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1104 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2140 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 295 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.022 REMARK 3 BOND ANGLES (DEGREES) : 2.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2HJP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038421. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24895 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 19.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.480 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PPH CRYSTAL STRUCTURE COMPLEX WITH MG++ AND REMARK 200 OXALATE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2M XYLOSE, 0.1M HEPES , PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.44500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.59000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.71500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.44500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.59000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.71500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.44500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.59000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.71500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.44500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 39.59000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 46.71500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE FUNCTIONAL TETRAMER IS FORMED BY THE THREE MUTUALLY REMARK 300 PERPENDICULAR CRYSTALLOGRAPHIC 2-FOLD AXES IN A 222 ARANGEMENT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 22440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -236.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 74.89000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 79.18000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 74.89000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 93.43000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 79.18000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 93.43000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 871 LIES ON A SPECIAL POSITION. REMARK 375 CL CL A 875 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 880 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 881 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 119 REMARK 465 LEU A 120 REMARK 465 ARG A 121 REMARK 465 THR A 122 REMARK 465 ASP A 123 REMARK 465 GLY A 124 REMARK 465 ARG A 125 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 148 CG CD NE CZ NH1 NH2 REMARK 480 GLN A 166 CG CD OE1 NE2 REMARK 480 ARG A 170 CD NE CZ NH1 REMARK 480 LYS A 200 CD CE NZ REMARK 480 LYS A 205 CG CD CE NZ REMARK 480 GLU A 248 CD OE1 OE2 REMARK 480 ARG A 260 NE CZ NH1 NH2 REMARK 480 LYS A 270 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB PRO A 216 CD1 ILE A 259 4566 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 130 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 287 NE - CZ - NH1 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG A 287 NE - CZ - NH2 ANGL. DEV. = 5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 55 47.60 -141.56 REMARK 500 ASP A 83 -119.27 48.36 REMARK 500 PRO A 212 20.52 -72.59 REMARK 500 ASN A 236 28.79 -155.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 254 0.28 SIDE CHAIN REMARK 500 TYR A 288 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 617 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 23 O REMARK 620 2 SER A 49 OG 112.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 292 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 81 OD2 REMARK 620 2 PPR A 291 O2 98.2 REMARK 620 3 PPR A 291 O2' 86.5 78.9 REMARK 620 4 HOH A 601 O 173.0 88.7 95.8 REMARK 620 5 HOH A 602 O 89.2 172.4 100.2 83.9 REMARK 620 6 HOH A 603 O 87.1 88.9 165.3 92.1 93.0 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HRW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PHOSPHONOPYRUVATE HYDROLASE REMARK 900 RELATED ID: 2DUA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PHOSPHONOPYRUVATE HYDROLASE COMPLEX WITH REMARK 900 OXALATE AND MG++ DBREF 2HJP A 1 290 UNP Q84G06 Q84G06_9BURK 1 290 SEQRES 1 A 290 MET THR LYS ASN GLN ALA LEU ARG ALA ALA LEU ASP SER SEQRES 2 A 290 GLY ARG LEU PHE THR ALA MET ALA ALA HIS ASN PRO LEU SEQRES 3 A 290 VAL ALA LYS LEU ALA GLU GLN ALA GLY PHE GLY GLY ILE SEQRES 4 A 290 TRP GLY SER GLY PHE GLU LEU SER ALA SER TYR ALA VAL SEQRES 5 A 290 PRO ASP ALA ASN ILE LEU SER MET SER THR HIS LEU GLU SEQRES 6 A 290 MET MET ARG ALA ILE ALA SER THR VAL SER ILE PRO LEU SEQRES 7 A 290 ILE ALA ASP ILE ASP THR GLY PHE GLY ASN ALA VAL ASN SEQRES 8 A 290 VAL HIS TYR VAL VAL PRO GLN TYR GLU ALA ALA GLY ALA SEQRES 9 A 290 SER ALA ILE VAL MET GLU ASP LYS THR PHE PRO LYS ASP SEQRES 10 A 290 THR SER LEU ARG THR ASP GLY ARG GLN GLU LEU VAL ARG SEQRES 11 A 290 ILE GLU GLU PHE GLN GLY LYS ILE ALA ALA ALA THR ALA SEQRES 12 A 290 ALA ARG ALA ASP ARG ASP PHE VAL VAL ILE ALA ARG VAL SEQRES 13 A 290 GLU ALA LEU ILE ALA GLY LEU GLY GLN GLN GLU ALA VAL SEQRES 14 A 290 ARG ARG GLY GLN ALA TYR GLU GLU ALA GLY ALA ASP ALA SEQRES 15 A 290 ILE LEU ILE HIS SER ARG GLN LYS THR PRO ASP GLU ILE SEQRES 16 A 290 LEU ALA PHE VAL LYS SER TRP PRO GLY LYS VAL PRO LEU SEQRES 17 A 290 VAL LEU VAL PRO THR ALA TYR PRO GLN LEU THR GLU ALA SEQRES 18 A 290 ASP ILE ALA ALA LEU SER LYS VAL GLY ILE VAL ILE TYR SEQRES 19 A 290 GLY ASN HIS ALA ILE ARG ALA ALA VAL GLY ALA VAL ARG SEQRES 20 A 290 GLU VAL PHE ALA ARG ILE ARG ARG ASP GLY GLY ILE ARG SEQRES 21 A 290 GLU VAL ASP ALA ALA LEU PRO SER VAL LYS GLU ILE ILE SEQRES 22 A 290 GLU LEU GLN GLY ASP GLU ARG MET ARG ALA VAL GLU ALA SEQRES 23 A 290 ARG TYR LEU LYS HET XYS A 293 10 HET MG A 292 1 HET NA A 617 1 HET CL A 871 1 HET CL A 875 1 HET PPR A 291 10 HETNAM XYS ALPHA-D-XYLOPYRANOSE HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM PPR PHOSPHONOPYRUVATE HETSYN XYS ALPHA-D-XYLOSE; D-XYLOSE; XYLOSE; XYLOPYRANOSE FORMUL 2 XYS C5 H10 O5 FORMUL 3 MG MG 2+ FORMUL 4 NA NA 1+ FORMUL 5 CL 2(CL 1-) FORMUL 7 PPR C3 H5 O6 P FORMUL 8 HOH *295(H2 O) HELIX 1 1 THR A 2 GLY A 14 1 13 HELIX 2 2 ASN A 24 GLY A 35 1 12 HELIX 3 3 SER A 42 TYR A 50 1 9 HELIX 4 4 SER A 59 SER A 72 1 14 HELIX 5 5 ASN A 88 GLY A 103 1 16 HELIX 6 6 ARG A 130 ARG A 145 1 16 HELIX 7 7 GLY A 164 ALA A 178 1 15 HELIX 8 8 PRO A 192 TRP A 202 1 11 HELIX 9 9 THR A 219 ALA A 225 1 7 HELIX 10 10 ASN A 236 GLY A 257 1 22 HELIX 11 11 SER A 268 GLN A 276 1 9 HELIX 12 12 GLY A 277 LEU A 289 1 13 SHEET 1 A 9 PHE A 17 ALA A 21 0 SHEET 2 A 9 GLY A 38 GLY A 41 1 O TRP A 40 N MET A 20 SHEET 3 A 9 LEU A 78 ASP A 81 1 O ILE A 79 N GLY A 41 SHEET 4 A 9 ALA A 106 GLU A 110 1 O ALA A 106 N ALA A 80 SHEET 5 A 9 VAL A 151 VAL A 156 1 O ARG A 155 N MET A 109 SHEET 6 A 9 ALA A 182 ILE A 185 1 O LEU A 184 N VAL A 156 SHEET 7 A 9 LEU A 208 LEU A 210 1 O VAL A 209 N ILE A 183 SHEET 8 A 9 VAL A 229 TYR A 234 1 O ILE A 233 N LEU A 210 SHEET 9 A 9 PHE A 17 ALA A 21 1 N PHE A 17 O GLY A 230 LINK O HIS A 23 NA NA A 617 1555 1555 2.71 LINK OG SER A 49 NA NA A 617 1555 1555 2.78 LINK OD2 ASP A 81 MG MG A 292 1555 1555 2.08 LINK O2 PPR A 291 MG MG A 292 1555 1555 2.14 LINK O2' PPR A 291 MG MG A 292 1555 1555 2.13 LINK MG MG A 292 O HOH A 601 1555 1555 2.10 LINK MG MG A 292 O HOH A 602 1555 1555 2.13 LINK MG MG A 292 O HOH A 603 1555 1555 2.12 CISPEP 1 PHE A 114 PRO A 115 0 -0.62 CRYST1 74.890 79.180 93.430 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013353 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012629 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010703 0.00000