data_2HJV # _entry.id 2HJV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2HJV RCSB RCSB038427 WWPDB D_1000038427 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2G0C _pdbx_database_related.details ;Structure of the rna binding domain (residues 404-479) of the bacillus subtilis yxin protein ; _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2HJV _pdbx_database_status.recvd_initial_deposition_date 2006-07-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'McKay, D.B.' 1 'Caruthers, J.M.' 2 # _citation.id primary _citation.title 'Structure of the second domain of the Bacillus subtilis DEAD-box RNA helicase YxiN.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.F' _citation.journal_volume 62 _citation.page_first 1191 _citation.page_last 1195 _citation.year 2006 _citation.journal_id_ASTM ? _citation.country DK _citation.journal_id_ISSN 1744-3091 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17142894 _citation.pdbx_database_id_DOI 10.1107/S1744309106044642 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Caruthers, J.M.' 1 primary 'Hu, Y.' 2 primary 'McKay, D.B.' 3 # _cell.entry_id 2HJV _cell.length_a 105.20 _cell.length_b 105.20 _cell.length_c 66.03 _cell.angle_alpha 90. _cell.angle_beta 90. _cell.angle_gamma 120. _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HJV _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 169 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ATP-dependent RNA helicase dbpA' 18676.176 2 3.6.1.- ? 'Bacillus subtilis YxiN domain 2 (Residues 207-368)' ? 2 water nat water 18.015 163 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MAAGLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNE FKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQK IEA ; _entity_poly.pdbx_seq_one_letter_code_can ;MAAGLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNE FKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQK IEA ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 ALA n 1 4 GLY n 1 5 LEU n 1 6 THR n 1 7 THR n 1 8 ARG n 1 9 ASN n 1 10 ILE n 1 11 GLU n 1 12 HIS n 1 13 ALA n 1 14 VAL n 1 15 ILE n 1 16 GLN n 1 17 VAL n 1 18 ARG n 1 19 GLU n 1 20 GLU n 1 21 ASN n 1 22 LYS n 1 23 PHE n 1 24 SER n 1 25 LEU n 1 26 LEU n 1 27 LYS n 1 28 ASP n 1 29 VAL n 1 30 LEU n 1 31 MET n 1 32 THR n 1 33 GLU n 1 34 ASN n 1 35 PRO n 1 36 ASP n 1 37 SER n 1 38 CYS n 1 39 ILE n 1 40 ILE n 1 41 PHE n 1 42 CYS n 1 43 ARG n 1 44 THR n 1 45 LYS n 1 46 GLU n 1 47 HIS n 1 48 VAL n 1 49 ASN n 1 50 GLN n 1 51 LEU n 1 52 THR n 1 53 ASP n 1 54 GLU n 1 55 LEU n 1 56 ASP n 1 57 ASP n 1 58 LEU n 1 59 GLY n 1 60 TYR n 1 61 PRO n 1 62 CYS n 1 63 ASP n 1 64 LYS n 1 65 ILE n 1 66 HIS n 1 67 GLY n 1 68 GLY n 1 69 MET n 1 70 ILE n 1 71 GLN n 1 72 GLU n 1 73 ASP n 1 74 ARG n 1 75 PHE n 1 76 ASP n 1 77 VAL n 1 78 MET n 1 79 ASN n 1 80 GLU n 1 81 PHE n 1 82 LYS n 1 83 ARG n 1 84 GLY n 1 85 GLU n 1 86 TYR n 1 87 ARG n 1 88 TYR n 1 89 LEU n 1 90 VAL n 1 91 ALA n 1 92 THR n 1 93 ASP n 1 94 VAL n 1 95 ALA n 1 96 ALA n 1 97 ARG n 1 98 GLY n 1 99 ILE n 1 100 ASP n 1 101 ILE n 1 102 GLU n 1 103 ASN n 1 104 ILE n 1 105 SER n 1 106 LEU n 1 107 VAL n 1 108 ILE n 1 109 ASN n 1 110 TYR n 1 111 ASP n 1 112 LEU n 1 113 PRO n 1 114 LEU n 1 115 GLU n 1 116 LYS n 1 117 GLU n 1 118 SER n 1 119 TYR n 1 120 VAL n 1 121 HIS n 1 122 ARG n 1 123 THR n 1 124 GLY n 1 125 ARG n 1 126 THR n 1 127 GLY n 1 128 ARG n 1 129 ALA n 1 130 GLY n 1 131 ASN n 1 132 LYS n 1 133 GLY n 1 134 LYS n 1 135 ALA n 1 136 ILE n 1 137 SER n 1 138 PHE n 1 139 VAL n 1 140 THR n 1 141 ALA n 1 142 PHE n 1 143 GLU n 1 144 LYS n 1 145 ARG n 1 146 PHE n 1 147 LEU n 1 148 ALA n 1 149 ASP n 1 150 ILE n 1 151 GLU n 1 152 GLU n 1 153 TYR n 1 154 ILE n 1 155 GLY n 1 156 PHE n 1 157 GLU n 1 158 ILE n 1 159 GLN n 1 160 LYS n 1 161 ILE n 1 162 GLU n 1 163 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Bacillus _entity_src_gen.pdbx_gene_src_gene dbpA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus subtilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1423 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pTWIN1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DBPA_BACSU _struct_ref.pdbx_db_accession P42305 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 207 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2HJV A 2 ? 163 ? P42305 207 ? 368 ? 207 368 2 1 2HJV B 2 ? 163 ? P42305 207 ? 368 ? 207 368 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2HJV MET A 1 ? UNP P42305 ? ? 'CLONING ARTIFACT' 206 1 1 2HJV GLN A 159 ? UNP P42305 PRO 364 VARIANT 364 2 2 2HJV MET B 1 ? UNP P42305 ? ? 'CLONING ARTIFACT' 206 3 2 2HJV GLN B 159 ? UNP P42305 PRO 364 VARIANT 364 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2HJV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.82 _exptl_crystal.density_percent_sol 56.43 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details 'Precipitant: 3% PEG-MME 550, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2004-02-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal, Si(1,1,1)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.entry_id 2HJV _reflns.observed_criterion_sigma_I 0. _reflns.observed_criterion_sigma_F 0. _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.95 _reflns.number_obs 27397 _reflns.number_all 30262 _reflns.percent_possible_obs 90.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.069 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 22.2 _reflns.pdbx_redundancy 4.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 1.98 _reflns_shell.percent_possible_all 95.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.227 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 4.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2HJV _refine.ls_number_reflns_obs 26991 _refine.ls_number_reflns_all 26991 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F .0 _refine.pdbx_data_cutoff_high_absF 866412.02 _refine.pdbx_data_cutoff_low_absF .000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.53 _refine.ls_d_res_high 1.95 _refine.ls_percent_reflns_obs 88.7 _refine.ls_R_factor_obs 0.209 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.209 _refine.ls_R_factor_R_free 0.247 _refine.ls_R_factor_R_free_error .006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.9 _refine.ls_number_reflns_R_free 1600 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 34.9 _refine.aniso_B[1][1] 1.75 _refine.aniso_B[2][2] 1.75 _refine.aniso_B[3][3] -3.50 _refine.aniso_B[1][2] 2.93 _refine.aniso_B[1][3] .00 _refine.aniso_B[2][3] .00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol .368646 _refine.solvent_model_param_bsol 43.2894 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'homologous domain of eIF4A (PDB 1FUK)' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2HJV _refine_analyze.Luzzati_coordinate_error_obs .22 _refine_analyze.Luzzati_sigma_a_obs .09 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free .27 _refine_analyze.Luzzati_sigma_a_free .07 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2533 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 163 _refine_hist.number_atoms_total 2696 _refine_hist.d_res_high 1.95 _refine_hist.d_res_low 30.53 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d .008 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.8 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d .81 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.59 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.48 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.42 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.73 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 1.95 _refine_ls_shell.d_res_low 2.02 _refine_ls_shell.number_reflns_R_work 2495 _refine_ls_shell.R_factor_R_work 0.221 _refine_ls_shell.percent_reflns_obs 88.4 _refine_ls_shell.R_factor_R_free 0.227 _refine_ls_shell.R_factor_R_free_error .017 _refine_ls_shell.percent_reflns_R_free 6.3 _refine_ls_shell.number_reflns_R_free 169 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' # _struct.entry_id 2HJV _struct.title 'Structure of the second domain (residues 207-368) of the Bacillus subtilis YxiN protein' _struct.pdbx_descriptor 'ATP-dependent RNA helicase dbpA (E.C.3.6.1.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2HJV _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'parallel alpha-beta, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 18 ? GLU A 20 ? ARG A 223 GLU A 225 5 ? 3 HELX_P HELX_P2 2 ASN A 21 ? ASN A 34 ? ASN A 226 ASN A 239 1 ? 14 HELX_P HELX_P3 3 THR A 44 ? LEU A 58 ? THR A 249 LEU A 263 1 ? 15 HELX_P HELX_P4 4 ILE A 70 ? ARG A 83 ? ILE A 275 ARG A 288 1 ? 14 HELX_P HELX_P5 5 ASP A 93 ? ALA A 96 ? ASP A 298 ALA A 301 5 ? 4 HELX_P HELX_P6 6 GLU A 115 ? THR A 123 ? GLU A 320 THR A 328 1 ? 9 HELX_P HELX_P7 7 THR A 140 ? PHE A 142 ? THR A 345 PHE A 347 5 ? 3 HELX_P HELX_P8 8 GLU A 143 ? GLY A 155 ? GLU A 348 GLY A 360 1 ? 13 HELX_P HELX_P9 9 ARG B 18 ? GLU B 20 ? ARG B 223 GLU B 225 5 ? 3 HELX_P HELX_P10 10 ASN B 21 ? ASN B 34 ? ASN B 226 ASN B 239 1 ? 14 HELX_P HELX_P11 11 THR B 44 ? LEU B 58 ? THR B 249 LEU B 263 1 ? 15 HELX_P HELX_P12 12 ILE B 70 ? GLY B 84 ? ILE B 275 GLY B 289 1 ? 15 HELX_P HELX_P13 13 GLU B 115 ? GLY B 124 ? GLU B 320 GLY B 329 1 ? 10 HELX_P HELX_P14 14 GLU B 143 ? GLY B 155 ? GLU B 348 GLY B 360 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel B 5 6 ? parallel B 6 7 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 CYS A 62 ? ILE A 65 ? CYS A 267 ILE A 270 A 2 TYR A 88 ? ALA A 91 ? TYR A 293 ALA A 296 A 3 CYS A 38 ? PHE A 41 ? CYS A 243 PHE A 246 A 4 LEU A 106 ? ASN A 109 ? LEU A 311 ASN A 314 A 5 GLY A 133 ? VAL A 139 ? GLY A 338 VAL A 344 A 6 ILE A 10 ? GLN A 16 ? ILE A 215 GLN A 221 A 7 GLN A 159 ? LYS A 160 ? GLN A 364 LYS A 365 B 1 CYS B 62 ? LYS B 64 ? CYS B 267 LYS B 269 B 2 TYR B 88 ? ALA B 91 ? TYR B 293 ALA B 296 B 3 CYS B 38 ? PHE B 41 ? CYS B 243 PHE B 246 B 4 LEU B 106 ? ASN B 109 ? LEU B 311 ASN B 314 B 5 GLY B 133 ? VAL B 139 ? GLY B 338 VAL B 344 B 6 ILE B 10 ? GLN B 16 ? ILE B 215 GLN B 221 B 7 GLN B 159 ? LYS B 160 ? GLN B 364 LYS B 365 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASP A 63 ? N ASP A 268 O VAL A 90 ? O VAL A 295 A 2 3 O LEU A 89 ? O LEU A 294 N ILE A 40 ? N ILE A 245 A 3 4 N ILE A 39 ? N ILE A 244 O ILE A 108 ? O ILE A 313 A 4 5 N ASN A 109 ? N ASN A 314 O ILE A 136 ? O ILE A 341 A 5 6 O ALA A 135 ? O ALA A 340 N GLU A 11 ? N GLU A 216 A 6 7 N VAL A 14 ? N VAL A 219 O GLN A 159 ? O GLN A 364 B 1 2 N ASP B 63 ? N ASP B 268 O VAL B 90 ? O VAL B 295 B 2 3 O LEU B 89 ? O LEU B 294 N ILE B 40 ? N ILE B 245 B 3 4 N PHE B 41 ? N PHE B 246 O ILE B 108 ? O ILE B 313 B 4 5 N ASN B 109 ? N ASN B 314 O ILE B 136 ? O ILE B 341 B 5 6 O SER B 137 ? O SER B 342 N ILE B 15 ? N ILE B 220 B 6 7 N VAL B 14 ? N VAL B 219 O GLN B 159 ? O GLN B 364 # _database_PDB_matrix.entry_id 2HJV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2HJV _atom_sites.fract_transf_matrix[1][1] 0.009506 _atom_sites.fract_transf_matrix[1][2] 0.005488 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010976 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015145 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 206 ? ? ? A . n A 1 2 ALA 2 207 ? ? ? A . n A 1 3 ALA 3 208 ? ? ? A . n A 1 4 GLY 4 209 ? ? ? A . n A 1 5 LEU 5 210 ? ? ? A . n A 1 6 THR 6 211 211 THR THR A . n A 1 7 THR 7 212 212 THR THR A . n A 1 8 ARG 8 213 213 ARG ARG A . n A 1 9 ASN 9 214 214 ASN ASN A . n A 1 10 ILE 10 215 215 ILE ILE A . n A 1 11 GLU 11 216 216 GLU GLU A . n A 1 12 HIS 12 217 217 HIS HIS A . n A 1 13 ALA 13 218 218 ALA ALA A . n A 1 14 VAL 14 219 219 VAL VAL A . n A 1 15 ILE 15 220 220 ILE ILE A . n A 1 16 GLN 16 221 221 GLN GLN A . n A 1 17 VAL 17 222 222 VAL VAL A . n A 1 18 ARG 18 223 223 ARG ARG A . n A 1 19 GLU 19 224 224 GLU GLU A . n A 1 20 GLU 20 225 225 GLU GLU A . n A 1 21 ASN 21 226 226 ASN ASN A . n A 1 22 LYS 22 227 227 LYS LYS A . n A 1 23 PHE 23 228 228 PHE PHE A . n A 1 24 SER 24 229 229 SER SER A . n A 1 25 LEU 25 230 230 LEU LEU A . n A 1 26 LEU 26 231 231 LEU LEU A . n A 1 27 LYS 27 232 232 LYS LYS A . n A 1 28 ASP 28 233 233 ASP ASP A . n A 1 29 VAL 29 234 234 VAL VAL A . n A 1 30 LEU 30 235 235 LEU LEU A . n A 1 31 MET 31 236 236 MET MET A . n A 1 32 THR 32 237 237 THR THR A . n A 1 33 GLU 33 238 238 GLU GLU A . n A 1 34 ASN 34 239 239 ASN ASN A . n A 1 35 PRO 35 240 240 PRO PRO A . n A 1 36 ASP 36 241 241 ASP ASP A . n A 1 37 SER 37 242 242 SER SER A . n A 1 38 CYS 38 243 243 CYS CYS A . n A 1 39 ILE 39 244 244 ILE ILE A . n A 1 40 ILE 40 245 245 ILE ILE A . n A 1 41 PHE 41 246 246 PHE PHE A . n A 1 42 CYS 42 247 247 CYS CYS A . n A 1 43 ARG 43 248 248 ARG ARG A . n A 1 44 THR 44 249 249 THR THR A . n A 1 45 LYS 45 250 250 LYS LYS A . n A 1 46 GLU 46 251 251 GLU GLU A . n A 1 47 HIS 47 252 252 HIS HIS A . n A 1 48 VAL 48 253 253 VAL VAL A . n A 1 49 ASN 49 254 254 ASN ASN A . n A 1 50 GLN 50 255 255 GLN GLN A . n A 1 51 LEU 51 256 256 LEU LEU A . n A 1 52 THR 52 257 257 THR THR A . n A 1 53 ASP 53 258 258 ASP ASP A . n A 1 54 GLU 54 259 259 GLU GLU A . n A 1 55 LEU 55 260 260 LEU LEU A . n A 1 56 ASP 56 261 261 ASP ASP A . n A 1 57 ASP 57 262 262 ASP ASP A . n A 1 58 LEU 58 263 263 LEU LEU A . n A 1 59 GLY 59 264 264 GLY GLY A . n A 1 60 TYR 60 265 265 TYR TYR A . n A 1 61 PRO 61 266 266 PRO PRO A . n A 1 62 CYS 62 267 267 CYS CYS A . n A 1 63 ASP 63 268 268 ASP ASP A . n A 1 64 LYS 64 269 269 LYS LYS A . n A 1 65 ILE 65 270 270 ILE ILE A . n A 1 66 HIS 66 271 271 HIS HIS A . n A 1 67 GLY 67 272 272 GLY GLY A . n A 1 68 GLY 68 273 273 GLY GLY A . n A 1 69 MET 69 274 274 MET MET A . n A 1 70 ILE 70 275 275 ILE ILE A . n A 1 71 GLN 71 276 276 GLN GLN A . n A 1 72 GLU 72 277 277 GLU GLU A . n A 1 73 ASP 73 278 278 ASP ASP A . n A 1 74 ARG 74 279 279 ARG ARG A . n A 1 75 PHE 75 280 280 PHE PHE A . n A 1 76 ASP 76 281 281 ASP ASP A . n A 1 77 VAL 77 282 282 VAL VAL A . n A 1 78 MET 78 283 283 MET MET A . n A 1 79 ASN 79 284 284 ASN ASN A . n A 1 80 GLU 80 285 285 GLU GLU A . n A 1 81 PHE 81 286 286 PHE PHE A . n A 1 82 LYS 82 287 287 LYS LYS A . n A 1 83 ARG 83 288 288 ARG ARG A . n A 1 84 GLY 84 289 289 GLY GLY A . n A 1 85 GLU 85 290 290 GLU GLU A . n A 1 86 TYR 86 291 291 TYR TYR A . n A 1 87 ARG 87 292 292 ARG ARG A . n A 1 88 TYR 88 293 293 TYR TYR A . n A 1 89 LEU 89 294 294 LEU LEU A . n A 1 90 VAL 90 295 295 VAL VAL A . n A 1 91 ALA 91 296 296 ALA ALA A . n A 1 92 THR 92 297 297 THR THR A . n A 1 93 ASP 93 298 298 ASP ASP A . n A 1 94 VAL 94 299 299 VAL VAL A . n A 1 95 ALA 95 300 300 ALA ALA A . n A 1 96 ALA 96 301 301 ALA ALA A . n A 1 97 ARG 97 302 302 ARG ARG A . n A 1 98 GLY 98 303 303 GLY GLY A . n A 1 99 ILE 99 304 304 ILE ILE A . n A 1 100 ASP 100 305 305 ASP ASP A . n A 1 101 ILE 101 306 306 ILE ILE A . n A 1 102 GLU 102 307 307 GLU GLU A . n A 1 103 ASN 103 308 308 ASN ASN A . n A 1 104 ILE 104 309 309 ILE ILE A . n A 1 105 SER 105 310 310 SER SER A . n A 1 106 LEU 106 311 311 LEU LEU A . n A 1 107 VAL 107 312 312 VAL VAL A . n A 1 108 ILE 108 313 313 ILE ILE A . n A 1 109 ASN 109 314 314 ASN ASN A . n A 1 110 TYR 110 315 315 TYR TYR A . n A 1 111 ASP 111 316 316 ASP ASP A . n A 1 112 LEU 112 317 317 LEU LEU A . n A 1 113 PRO 113 318 318 PRO PRO A . n A 1 114 LEU 114 319 319 LEU LEU A . n A 1 115 GLU 115 320 320 GLU GLU A . n A 1 116 LYS 116 321 321 LYS LYS A . n A 1 117 GLU 117 322 322 GLU GLU A . n A 1 118 SER 118 323 323 SER SER A . n A 1 119 TYR 119 324 324 TYR TYR A . n A 1 120 VAL 120 325 325 VAL VAL A . n A 1 121 HIS 121 326 326 HIS HIS A . n A 1 122 ARG 122 327 327 ARG ARG A . n A 1 123 THR 123 328 328 THR THR A . n A 1 124 GLY 124 329 329 GLY GLY A . n A 1 125 ARG 125 330 330 ARG ARG A . n A 1 126 THR 126 331 331 THR THR A . n A 1 127 GLY 127 332 332 GLY GLY A . n A 1 128 ARG 128 333 333 ARG ARG A . n A 1 129 ALA 129 334 334 ALA ALA A . n A 1 130 GLY 130 335 335 GLY GLY A . n A 1 131 ASN 131 336 336 ASN ASN A . n A 1 132 LYS 132 337 337 LYS LYS A . n A 1 133 GLY 133 338 338 GLY GLY A . n A 1 134 LYS 134 339 339 LYS LYS A . n A 1 135 ALA 135 340 340 ALA ALA A . n A 1 136 ILE 136 341 341 ILE ILE A . n A 1 137 SER 137 342 342 SER SER A . n A 1 138 PHE 138 343 343 PHE PHE A . n A 1 139 VAL 139 344 344 VAL VAL A . n A 1 140 THR 140 345 345 THR THR A . n A 1 141 ALA 141 346 346 ALA ALA A . n A 1 142 PHE 142 347 347 PHE PHE A . n A 1 143 GLU 143 348 348 GLU GLU A . n A 1 144 LYS 144 349 349 LYS LYS A . n A 1 145 ARG 145 350 350 ARG ARG A . n A 1 146 PHE 146 351 351 PHE PHE A . n A 1 147 LEU 147 352 352 LEU LEU A . n A 1 148 ALA 148 353 353 ALA ALA A . n A 1 149 ASP 149 354 354 ASP ASP A . n A 1 150 ILE 150 355 355 ILE ILE A . n A 1 151 GLU 151 356 356 GLU GLU A . n A 1 152 GLU 152 357 357 GLU GLU A . n A 1 153 TYR 153 358 358 TYR TYR A . n A 1 154 ILE 154 359 359 ILE ILE A . n A 1 155 GLY 155 360 360 GLY GLY A . n A 1 156 PHE 156 361 361 PHE PHE A . n A 1 157 GLU 157 362 362 GLU GLU A . n A 1 158 ILE 158 363 363 ILE ILE A . n A 1 159 GLN 159 364 364 GLN GLN A . n A 1 160 LYS 160 365 365 LYS LYS A . n A 1 161 ILE 161 366 366 ILE ILE A . n A 1 162 GLU 162 367 367 GLU GLU A . n A 1 163 ALA 163 368 368 ALA ALA A . n B 1 1 MET 1 206 ? ? ? B . n B 1 2 ALA 2 207 ? ? ? B . n B 1 3 ALA 3 208 ? ? ? B . n B 1 4 GLY 4 209 ? ? ? B . n B 1 5 LEU 5 210 ? ? ? B . n B 1 6 THR 6 211 ? ? ? B . n B 1 7 THR 7 212 ? ? ? B . n B 1 8 ARG 8 213 ? ? ? B . n B 1 9 ASN 9 214 214 ASN ASN B . n B 1 10 ILE 10 215 215 ILE ILE B . n B 1 11 GLU 11 216 216 GLU GLU B . n B 1 12 HIS 12 217 217 HIS HIS B . n B 1 13 ALA 13 218 218 ALA ALA B . n B 1 14 VAL 14 219 219 VAL VAL B . n B 1 15 ILE 15 220 220 ILE ILE B . n B 1 16 GLN 16 221 221 GLN GLN B . n B 1 17 VAL 17 222 222 VAL VAL B . n B 1 18 ARG 18 223 223 ARG ARG B . n B 1 19 GLU 19 224 224 GLU GLU B . n B 1 20 GLU 20 225 225 GLU GLU B . n B 1 21 ASN 21 226 226 ASN ASN B . n B 1 22 LYS 22 227 227 LYS LYS B . n B 1 23 PHE 23 228 228 PHE PHE B . n B 1 24 SER 24 229 229 SER SER B . n B 1 25 LEU 25 230 230 LEU LEU B . n B 1 26 LEU 26 231 231 LEU LEU B . n B 1 27 LYS 27 232 232 LYS LYS B . n B 1 28 ASP 28 233 233 ASP ASP B . n B 1 29 VAL 29 234 234 VAL VAL B . n B 1 30 LEU 30 235 235 LEU LEU B . n B 1 31 MET 31 236 236 MET MET B . n B 1 32 THR 32 237 237 THR THR B . n B 1 33 GLU 33 238 238 GLU GLU B . n B 1 34 ASN 34 239 239 ASN ASN B . n B 1 35 PRO 35 240 240 PRO PRO B . n B 1 36 ASP 36 241 241 ASP ASP B . n B 1 37 SER 37 242 242 SER SER B . n B 1 38 CYS 38 243 243 CYS CYS B . n B 1 39 ILE 39 244 244 ILE ILE B . n B 1 40 ILE 40 245 245 ILE ILE B . n B 1 41 PHE 41 246 246 PHE PHE B . n B 1 42 CYS 42 247 247 CYS CYS B . n B 1 43 ARG 43 248 248 ARG ARG B . n B 1 44 THR 44 249 249 THR THR B . n B 1 45 LYS 45 250 250 LYS LYS B . n B 1 46 GLU 46 251 251 GLU GLU B . n B 1 47 HIS 47 252 252 HIS HIS B . n B 1 48 VAL 48 253 253 VAL VAL B . n B 1 49 ASN 49 254 254 ASN ASN B . n B 1 50 GLN 50 255 255 GLN GLN B . n B 1 51 LEU 51 256 256 LEU LEU B . n B 1 52 THR 52 257 257 THR THR B . n B 1 53 ASP 53 258 258 ASP ASP B . n B 1 54 GLU 54 259 259 GLU GLU B . n B 1 55 LEU 55 260 260 LEU LEU B . n B 1 56 ASP 56 261 261 ASP ASP B . n B 1 57 ASP 57 262 262 ASP ASP B . n B 1 58 LEU 58 263 263 LEU LEU B . n B 1 59 GLY 59 264 264 GLY GLY B . n B 1 60 TYR 60 265 265 TYR TYR B . n B 1 61 PRO 61 266 266 PRO PRO B . n B 1 62 CYS 62 267 267 CYS CYS B . n B 1 63 ASP 63 268 268 ASP ASP B . n B 1 64 LYS 64 269 269 LYS LYS B . n B 1 65 ILE 65 270 270 ILE ILE B . n B 1 66 HIS 66 271 271 HIS HIS B . n B 1 67 GLY 67 272 272 GLY GLY B . n B 1 68 GLY 68 273 273 GLY GLY B . n B 1 69 MET 69 274 274 MET MET B . n B 1 70 ILE 70 275 275 ILE ILE B . n B 1 71 GLN 71 276 276 GLN GLN B . n B 1 72 GLU 72 277 277 GLU GLU B . n B 1 73 ASP 73 278 278 ASP ASP B . n B 1 74 ARG 74 279 279 ARG ARG B . n B 1 75 PHE 75 280 280 PHE PHE B . n B 1 76 ASP 76 281 281 ASP ASP B . n B 1 77 VAL 77 282 282 VAL VAL B . n B 1 78 MET 78 283 283 MET MET B . n B 1 79 ASN 79 284 284 ASN ASN B . n B 1 80 GLU 80 285 285 GLU GLU B . n B 1 81 PHE 81 286 286 PHE PHE B . n B 1 82 LYS 82 287 287 LYS LYS B . n B 1 83 ARG 83 288 288 ARG ARG B . n B 1 84 GLY 84 289 289 GLY GLY B . n B 1 85 GLU 85 290 290 GLU GLU B . n B 1 86 TYR 86 291 291 TYR TYR B . n B 1 87 ARG 87 292 292 ARG ARG B . n B 1 88 TYR 88 293 293 TYR TYR B . n B 1 89 LEU 89 294 294 LEU LEU B . n B 1 90 VAL 90 295 295 VAL VAL B . n B 1 91 ALA 91 296 296 ALA ALA B . n B 1 92 THR 92 297 297 THR THR B . n B 1 93 ASP 93 298 298 ASP ASP B . n B 1 94 VAL 94 299 299 VAL VAL B . n B 1 95 ALA 95 300 300 ALA ALA B . n B 1 96 ALA 96 301 301 ALA ALA B . n B 1 97 ARG 97 302 302 ARG ARG B . n B 1 98 GLY 98 303 303 GLY GLY B . n B 1 99 ILE 99 304 304 ILE ILE B . n B 1 100 ASP 100 305 305 ASP ASP B . n B 1 101 ILE 101 306 306 ILE ILE B . n B 1 102 GLU 102 307 307 GLU GLU B . n B 1 103 ASN 103 308 308 ASN ASN B . n B 1 104 ILE 104 309 309 ILE ILE B . n B 1 105 SER 105 310 310 SER SER B . n B 1 106 LEU 106 311 311 LEU LEU B . n B 1 107 VAL 107 312 312 VAL VAL B . n B 1 108 ILE 108 313 313 ILE ILE B . n B 1 109 ASN 109 314 314 ASN ASN B . n B 1 110 TYR 110 315 315 TYR TYR B . n B 1 111 ASP 111 316 316 ASP ASP B . n B 1 112 LEU 112 317 317 LEU LEU B . n B 1 113 PRO 113 318 318 PRO PRO B . n B 1 114 LEU 114 319 319 LEU LEU B . n B 1 115 GLU 115 320 320 GLU GLU B . n B 1 116 LYS 116 321 321 LYS LYS B . n B 1 117 GLU 117 322 322 GLU GLU B . n B 1 118 SER 118 323 323 SER SER B . n B 1 119 TYR 119 324 324 TYR TYR B . n B 1 120 VAL 120 325 325 VAL VAL B . n B 1 121 HIS 121 326 326 HIS HIS B . n B 1 122 ARG 122 327 327 ARG ARG B . n B 1 123 THR 123 328 328 THR THR B . n B 1 124 GLY 124 329 329 GLY GLY B . n B 1 125 ARG 125 330 330 ARG ARG B . n B 1 126 THR 126 331 331 THR THR B . n B 1 127 GLY 127 332 332 GLY GLY B . n B 1 128 ARG 128 333 333 ARG ARG B . n B 1 129 ALA 129 334 334 ALA ALA B . n B 1 130 GLY 130 335 335 GLY GLY B . n B 1 131 ASN 131 336 336 ASN ASN B . n B 1 132 LYS 132 337 337 LYS LYS B . n B 1 133 GLY 133 338 338 GLY GLY B . n B 1 134 LYS 134 339 339 LYS LYS B . n B 1 135 ALA 135 340 340 ALA ALA B . n B 1 136 ILE 136 341 341 ILE ILE B . n B 1 137 SER 137 342 342 SER SER B . n B 1 138 PHE 138 343 343 PHE PHE B . n B 1 139 VAL 139 344 344 VAL VAL B . n B 1 140 THR 140 345 345 THR THR B . n B 1 141 ALA 141 346 346 ALA ALA B . n B 1 142 PHE 142 347 347 PHE PHE B . n B 1 143 GLU 143 348 348 GLU GLU B . n B 1 144 LYS 144 349 349 LYS LYS B . n B 1 145 ARG 145 350 350 ARG ARG B . n B 1 146 PHE 146 351 351 PHE PHE B . n B 1 147 LEU 147 352 352 LEU LEU B . n B 1 148 ALA 148 353 353 ALA ALA B . n B 1 149 ASP 149 354 354 ASP ASP B . n B 1 150 ILE 150 355 355 ILE ILE B . n B 1 151 GLU 151 356 356 GLU GLU B . n B 1 152 GLU 152 357 357 GLU GLU B . n B 1 153 TYR 153 358 358 TYR TYR B . n B 1 154 ILE 154 359 359 ILE ILE B . n B 1 155 GLY 155 360 360 GLY GLY B . n B 1 156 PHE 156 361 361 PHE PHE B . n B 1 157 GLU 157 362 362 GLU GLU B . n B 1 158 ILE 158 363 363 ILE ILE B . n B 1 159 GLN 159 364 364 GLN GLN B . n B 1 160 LYS 160 365 365 LYS LYS B . n B 1 161 ILE 161 366 366 ILE ILE B . n B 1 162 GLU 162 367 367 GLU GLU B . n B 1 163 ALA 163 368 368 ALA ALA B . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-12-12 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement . ? 1 HKL-2000 'data reduction' . ? 2 HKL-2000 'data scaling' . ? 3 CNS phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN B 239 ? ? 34.79 58.09 2 1 ALA B 334 ? ? -26.12 -48.58 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 206 ? A MET 1 2 1 Y 1 A ALA 207 ? A ALA 2 3 1 Y 1 A ALA 208 ? A ALA 3 4 1 Y 1 A GLY 209 ? A GLY 4 5 1 Y 1 A LEU 210 ? A LEU 5 6 1 Y 1 B MET 206 ? B MET 1 7 1 Y 1 B ALA 207 ? B ALA 2 8 1 Y 1 B ALA 208 ? B ALA 3 9 1 Y 1 B GLY 209 ? B GLY 4 10 1 Y 1 B LEU 210 ? B LEU 5 11 1 Y 1 B THR 211 ? B THR 6 12 1 Y 1 B THR 212 ? B THR 7 13 1 Y 1 B ARG 213 ? B ARG 8 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 1001 1001 HOH WAT A . C 2 HOH 2 1002 1002 HOH WAT A . C 2 HOH 3 1003 1003 HOH WAT A . C 2 HOH 4 1004 1004 HOH WAT A . C 2 HOH 5 1005 1005 HOH WAT A . C 2 HOH 6 1006 1006 HOH WAT A . C 2 HOH 7 1007 1007 HOH WAT A . C 2 HOH 8 1008 1008 HOH WAT A . C 2 HOH 9 1009 1009 HOH WAT A . C 2 HOH 10 1010 1010 HOH WAT A . C 2 HOH 11 1011 1011 HOH WAT A . C 2 HOH 12 1012 1012 HOH WAT A . C 2 HOH 13 1013 1013 HOH WAT A . C 2 HOH 14 1014 1014 HOH WAT A . C 2 HOH 15 1015 1015 HOH WAT A . C 2 HOH 16 1016 1016 HOH WAT A . C 2 HOH 17 1017 1017 HOH WAT A . C 2 HOH 18 1018 1018 HOH WAT A . C 2 HOH 19 1019 1019 HOH WAT A . C 2 HOH 20 1020 1020 HOH WAT A . C 2 HOH 21 1021 1021 HOH WAT A . C 2 HOH 22 1022 1022 HOH WAT A . C 2 HOH 23 1023 1023 HOH WAT A . C 2 HOH 24 1024 1024 HOH WAT A . C 2 HOH 25 1025 1025 HOH WAT A . C 2 HOH 26 1026 1026 HOH WAT A . C 2 HOH 27 1027 1027 HOH WAT A . C 2 HOH 28 1028 1028 HOH WAT A . C 2 HOH 29 1029 1029 HOH WAT A . C 2 HOH 30 1030 1030 HOH WAT A . C 2 HOH 31 1031 1031 HOH WAT A . C 2 HOH 32 1032 1032 HOH WAT A . C 2 HOH 33 1033 1033 HOH WAT A . C 2 HOH 34 1034 1034 HOH WAT A . C 2 HOH 35 1035 1035 HOH WAT A . C 2 HOH 36 1036 1036 HOH WAT A . C 2 HOH 37 1037 1037 HOH WAT A . C 2 HOH 38 1038 1038 HOH WAT A . C 2 HOH 39 1039 1039 HOH WAT A . C 2 HOH 40 1040 1040 HOH WAT A . C 2 HOH 41 1041 1041 HOH WAT A . C 2 HOH 42 1042 1042 HOH WAT A . C 2 HOH 43 1043 1043 HOH WAT A . C 2 HOH 44 1044 1044 HOH WAT A . C 2 HOH 45 1045 1045 HOH WAT A . C 2 HOH 46 1046 1046 HOH WAT A . C 2 HOH 47 1047 1047 HOH WAT A . C 2 HOH 48 1048 1048 HOH WAT A . C 2 HOH 49 1049 1049 HOH WAT A . C 2 HOH 50 1050 1050 HOH WAT A . C 2 HOH 51 1051 1051 HOH WAT A . C 2 HOH 52 1052 1052 HOH WAT A . C 2 HOH 53 1053 1053 HOH WAT A . C 2 HOH 54 1054 1054 HOH WAT A . C 2 HOH 55 1055 1055 HOH WAT A . C 2 HOH 56 1057 1057 HOH WAT A . C 2 HOH 57 1058 1058 HOH WAT A . C 2 HOH 58 1059 1059 HOH WAT A . C 2 HOH 59 1060 1060 HOH WAT A . C 2 HOH 60 1061 1061 HOH WAT A . C 2 HOH 61 1062 1062 HOH WAT A . C 2 HOH 62 1071 1071 HOH WAT A . C 2 HOH 63 1072 1072 HOH WAT A . C 2 HOH 64 1088 1088 HOH WAT A . C 2 HOH 65 1119 1119 HOH WAT A . C 2 HOH 66 1120 1120 HOH WAT A . C 2 HOH 67 1121 1121 HOH WAT A . C 2 HOH 68 1123 1123 HOH WAT A . C 2 HOH 69 1124 1124 HOH WAT A . C 2 HOH 70 1125 1125 HOH WAT A . C 2 HOH 71 1126 1126 HOH WAT A . C 2 HOH 72 1127 1127 HOH WAT A . C 2 HOH 73 1128 1128 HOH WAT A . C 2 HOH 74 1129 1129 HOH WAT A . C 2 HOH 75 1130 1130 HOH WAT A . C 2 HOH 76 1132 1132 HOH WAT A . C 2 HOH 77 1133 1133 HOH WAT A . C 2 HOH 78 1134 1134 HOH WAT A . C 2 HOH 79 1136 1136 HOH WAT A . C 2 HOH 80 1137 1137 HOH WAT A . C 2 HOH 81 1138 1138 HOH WAT A . C 2 HOH 82 1139 1139 HOH WAT A . C 2 HOH 83 1140 1140 HOH WAT A . C 2 HOH 84 1141 1141 HOH WAT A . C 2 HOH 85 1142 1142 HOH WAT A . C 2 HOH 86 1143 1143 HOH WAT A . C 2 HOH 87 1147 1147 HOH WAT A . C 2 HOH 88 1148 1148 HOH WAT A . C 2 HOH 89 1151 1151 HOH WAT A . C 2 HOH 90 1152 1152 HOH WAT A . C 2 HOH 91 1155 1155 HOH WAT A . C 2 HOH 92 1157 1157 HOH WAT A . C 2 HOH 93 1159 1159 HOH WAT A . C 2 HOH 94 1161 1161 HOH WAT A . C 2 HOH 95 1162 1162 HOH WAT A . C 2 HOH 96 1163 1163 HOH WAT A . D 2 HOH 1 1056 1056 HOH WAT B . D 2 HOH 2 1063 1063 HOH WAT B . D 2 HOH 3 1064 1064 HOH WAT B . D 2 HOH 4 1065 1065 HOH WAT B . D 2 HOH 5 1066 1066 HOH WAT B . D 2 HOH 6 1067 1067 HOH WAT B . D 2 HOH 7 1068 1068 HOH WAT B . D 2 HOH 8 1069 1069 HOH WAT B . D 2 HOH 9 1070 1070 HOH WAT B . D 2 HOH 10 1073 1073 HOH WAT B . D 2 HOH 11 1074 1074 HOH WAT B . D 2 HOH 12 1075 1075 HOH WAT B . D 2 HOH 13 1076 1076 HOH WAT B . D 2 HOH 14 1077 1077 HOH WAT B . D 2 HOH 15 1078 1078 HOH WAT B . D 2 HOH 16 1079 1079 HOH WAT B . D 2 HOH 17 1080 1080 HOH WAT B . D 2 HOH 18 1081 1081 HOH WAT B . D 2 HOH 19 1082 1082 HOH WAT B . D 2 HOH 20 1083 1083 HOH WAT B . D 2 HOH 21 1084 1084 HOH WAT B . D 2 HOH 22 1085 1085 HOH WAT B . D 2 HOH 23 1086 1086 HOH WAT B . D 2 HOH 24 1087 1087 HOH WAT B . D 2 HOH 25 1089 1089 HOH WAT B . D 2 HOH 26 1090 1090 HOH WAT B . D 2 HOH 27 1091 1091 HOH WAT B . D 2 HOH 28 1092 1092 HOH WAT B . D 2 HOH 29 1093 1093 HOH WAT B . D 2 HOH 30 1094 1094 HOH WAT B . D 2 HOH 31 1095 1095 HOH WAT B . D 2 HOH 32 1096 1096 HOH WAT B . D 2 HOH 33 1097 1097 HOH WAT B . D 2 HOH 34 1098 1098 HOH WAT B . D 2 HOH 35 1099 1099 HOH WAT B . D 2 HOH 36 1100 1100 HOH WAT B . D 2 HOH 37 1101 1101 HOH WAT B . D 2 HOH 38 1102 1102 HOH WAT B . D 2 HOH 39 1103 1103 HOH WAT B . D 2 HOH 40 1104 1104 HOH WAT B . D 2 HOH 41 1105 1105 HOH WAT B . D 2 HOH 42 1106 1106 HOH WAT B . D 2 HOH 43 1107 1107 HOH WAT B . D 2 HOH 44 1108 1108 HOH WAT B . D 2 HOH 45 1109 1109 HOH WAT B . D 2 HOH 46 1110 1110 HOH WAT B . D 2 HOH 47 1111 1111 HOH WAT B . D 2 HOH 48 1112 1112 HOH WAT B . D 2 HOH 49 1113 1113 HOH WAT B . D 2 HOH 50 1114 1114 HOH WAT B . D 2 HOH 51 1115 1115 HOH WAT B . D 2 HOH 52 1116 1116 HOH WAT B . D 2 HOH 53 1117 1117 HOH WAT B . D 2 HOH 54 1118 1118 HOH WAT B . D 2 HOH 55 1122 1122 HOH WAT B . D 2 HOH 56 1131 1131 HOH WAT B . D 2 HOH 57 1135 1135 HOH WAT B . D 2 HOH 58 1144 1144 HOH WAT B . D 2 HOH 59 1145 1145 HOH WAT B . D 2 HOH 60 1146 1146 HOH WAT B . D 2 HOH 61 1149 1149 HOH WAT B . D 2 HOH 62 1150 1150 HOH WAT B . D 2 HOH 63 1153 1153 HOH WAT B . D 2 HOH 64 1154 1154 HOH WAT B . D 2 HOH 65 1156 1156 HOH WAT B . D 2 HOH 66 1158 1158 HOH WAT B . D 2 HOH 67 1160 1160 HOH WAT B . #