HEADER LYASE 04-JUL-06 2HKE TITLE MEVALONATE DIPHOSPHATE DECARBOXYLASE FROM TRYPANOSOMA BRUCEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIPHOSPHOMEVALONATE DECARBOXYLASE, PUTATIVE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MEVALONATE DIPHOSPHATE DECARBOXYLASE; COMPND 5 EC: 4.1.1.33; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 STRAIN: 427, BLOODSTREAM FORM; SOURCE 5 GENE: MDD (CDS:TB10.05.0010); SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS MEVALONATE DIPHOSPHATE DECARBOXYLASE, DIPHOSPHOMEVALONATE KEYWDS 2 DECARBOXYLASE, DECARBOXYLASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR E.BYRES,M.S.ALPHEY,W.N.HUNTER REVDAT 5 25-OCT-23 2HKE 1 REMARK REVDAT 4 10-NOV-21 2HKE 1 REMARK SEQADV REVDAT 3 24-FEB-09 2HKE 1 VERSN REVDAT 2 07-AUG-07 2HKE 1 JRNL REVDAT 1 12-JUN-07 2HKE 0 JRNL AUTH E.BYRES,M.S.ALPHEY,T.K.SMITH,W.N.HUNTER JRNL TITL CRYSTAL STRUCTURES OF TRYPANOSOMA BRUCEI AND STAPHYLOCOCCUS JRNL TITL 2 AUREUS MEVALONATE DIPHOSPHATE DECARBOXYLASE INFORM ON THE JRNL TITL 3 DETERMINANTS OF SPECIFICITY AND REACTIVITY JRNL REF J.MOL.BIOL. V. 371 540 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17583736 JRNL DOI 10.1016/J.JMB.2007.05.094 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.BYRES,D.M.A.MARTIN,W.N.HUNTER REMARK 1 TITL A PRELIMINARY CRYSTALLOGRAPHIC ANALYSIS OF THE PUTATIVE REMARK 1 TITL 2 MEVALONATE DIPHOSPHATE DECARBOXYLASE FROM TRYPANOSOMA REMARK 1 TITL 3 BRUCEI. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 61 581 2005 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 16511101 REMARK 1 DOI 10.1107/S1744309105014594 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 74800 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3767 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5199 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 267 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5813 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 712 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.81000 REMARK 3 B22 (A**2) : 1.02000 REMARK 3 B33 (A**2) : -1.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.82000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.543 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5944 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4103 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8037 ; 1.558 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10072 ; 0.922 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 755 ; 6.161 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 232 ;39.965 ;24.483 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1073 ;14.062 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;18.041 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 912 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6500 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1132 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1225 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4368 ; 0.198 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2973 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3143 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 602 ; 0.180 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.013 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.224 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 50 ; 0.233 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 48 ; 0.210 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4837 ; 1.413 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1507 ; 0.263 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6092 ; 1.595 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2504 ; 2.776 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1943 ; 3.897 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HKE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038446. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.939 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74805 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 42.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : 0.10600 REMARK 200 FOR THE DATA SET : 4.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.65800 REMARK 200 R SYM FOR SHELL (I) : 0.65800 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE, DM 4.2 REMARK 200 STARTING MODEL: PDB ENTRY 1FI4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 8000, 180MM AMMONIUM SULFATE, REMARK 280 100MM SODIUM CACODYLATE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 84.33300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A MONOMER. THERE ARE 2 BIOLOGICAL REMARK 300 UNITS IN THE ASYMMETRIC UNIT (CHAINS A & B) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 3 REMARK 465 PRO B 380 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 THR A 134 CB OG1 CG2 REMARK 480 ARG A 330 CG CD NE CZ NH1 NH2 REMARK 480 ARG B 330 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 459 O HOH A 654 2.05 REMARK 500 O HOH A 665 O HOH B 506 2.08 REMARK 500 NZ LYS A 304 O HOH A 744 2.12 REMARK 500 O HOH A 710 O HOH A 746 2.13 REMARK 500 OD1 ASN A 66 O HOH A 812 2.15 REMARK 500 O HOH A 595 O HOH A 725 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 447 O HOH A 628 1556 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 35 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 30 67.84 64.94 REMARK 500 ALA A 109 -4.37 79.36 REMARK 500 ILE B 30 64.30 61.45 REMARK 500 ALA B 109 -11.98 84.53 REMARK 500 ALA B 294 39.79 70.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 381 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 381 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 382 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 383 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 382 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 383 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HK2 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN MONOCLINIC CRYSTAL FORM FROM STAPHYLOCOCCUS REMARK 900 AUREUS REMARK 900 RELATED ID: 2HK3 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN ORTHORHOMBIC CRYSTAL FORM FROM STAPHYLOCOCCUS REMARK 900 AUREUS DBREF 2HKE A 1 380 UNP Q388P2 Q388P2_9TRYP 1 380 DBREF 2HKE B 1 380 UNP Q388P2 Q388P2_9TRYP 1 380 SEQADV 2HKE GLU A 92 UNP Q388P2 ASP 92 ENGINEERED MUTATION SEQADV 2HKE GLU B 92 UNP Q388P2 ASP 92 ENGINEERED MUTATION SEQRES 1 A 380 MET SER ASP GLN CYS VAL THR VAL GLU ALA PRO ILE ASN SEQRES 2 A 380 ILE ALA PHE ILE LYS TYR TRP GLY LYS ARG GLU GLY GLY SEQRES 3 A 380 GLU THR LEU ILE LEU PRO THR ASN ASP SER PHE SER ILE SEQRES 4 A 380 THR LEU SER ALA SER PRO PHE ARG SER LYS THR SER VAL SEQRES 5 A 380 GLU LEU ARG ASP ASP ILE GLU THR ASP THR LEU ARG LEU SEQRES 6 A 380 ASN GLY THR GLU VAL ASP VAL GLY LYS THR PRO ARG VAL SEQRES 7 A 380 GLN SER MET LEU LEU HIS LEU ARG SER THR CYS PRO GLU SEQRES 8 A 380 GLU LEU LYS ASN LYS LYS VAL ASN ILE VAL SER GLU ASN SEQRES 9 A 380 ASN PHE PRO THR ALA ALA GLY MET ALA SER SER ALA SER SEQRES 10 A 380 GLY TYR CYS ALA MET SER ALA ALA LEU ILE ARG ALA PHE SEQRES 11 A 380 LYS SER THR THR ASN VAL SER MET LEU ALA ARG LEU GLY SEQRES 12 A 380 SER GLY SER ALA CYS ARG SER ALA PHE GLY GLY PHE VAL SEQRES 13 A 380 ILE TRP ASN LYS GLY GLU LYS PRO ASP GLY SER ASP CYS SEQRES 14 A 380 VAL ALA THR GLN PHE VAL ASP GLU THR HIS TRP PRO GLU SEQRES 15 A 380 ILE GLN VAL MET CYS ALA VAL LEU LYS GLY ALA GLN LYS SEQRES 16 A 380 ASP VAL SER SER THR LYS GLY MET GLN GLN SER LEU LYS SEQRES 17 A 380 THR SER PRO LEU MET LYS LYS ARG ILE SER GLU THR VAL SEQRES 18 A 380 PRO GLU ARG MET LYS ILE ALA SER ARG ALA ILE LYS ALA SEQRES 19 A 380 ARG ASP PHE ALA THR PHE ALA GLU ILE ALA MET LEU GLU SEQRES 20 A 380 SER ASP ASP LEU GLN GLU ILE CYS ALA THR THR GLU PRO SEQRES 21 A 380 LYS ILE THR TYR ALA THR GLU ASP SER TYR ALA MET ILE SEQRES 22 A 380 ARG LEU VAL LYS ALA TYR ASN ALA LYS LYS GLY ARG THR SEQRES 23 A 380 ALA LEU ALA TYR THR PHE ASP ALA GLY ALA ASN CYS PHE SEQRES 24 A 380 LEU PHE VAL LEU LYS GLU ASP LEU PRO GLU ALA VAL ALA SEQRES 25 A 380 MET LEU MET GLU HIS PHE PRO THR PRO PHE GLU LYS PHE SEQRES 26 A 380 PHE PHE GLY ASP ARG GLU LEU LEU GLU LYS VAL LYS VAL SEQRES 27 A 380 VAL SER LEU PRO ASP GLU TYR LYS LYS LEU ILE ASP HIS SEQRES 28 A 380 PRO LYS LYS PRO PHE GLU MET LEU LEU GLN SER PRO VAL SEQRES 29 A 380 GLY CYS GLY VAL LYS TYR LEU GLY PRO SER GLU SER LEU SEQRES 30 A 380 ILE PRO PRO SEQRES 1 B 380 MET SER ASP GLN CYS VAL THR VAL GLU ALA PRO ILE ASN SEQRES 2 B 380 ILE ALA PHE ILE LYS TYR TRP GLY LYS ARG GLU GLY GLY SEQRES 3 B 380 GLU THR LEU ILE LEU PRO THR ASN ASP SER PHE SER ILE SEQRES 4 B 380 THR LEU SER ALA SER PRO PHE ARG SER LYS THR SER VAL SEQRES 5 B 380 GLU LEU ARG ASP ASP ILE GLU THR ASP THR LEU ARG LEU SEQRES 6 B 380 ASN GLY THR GLU VAL ASP VAL GLY LYS THR PRO ARG VAL SEQRES 7 B 380 GLN SER MET LEU LEU HIS LEU ARG SER THR CYS PRO GLU SEQRES 8 B 380 GLU LEU LYS ASN LYS LYS VAL ASN ILE VAL SER GLU ASN SEQRES 9 B 380 ASN PHE PRO THR ALA ALA GLY MET ALA SER SER ALA SER SEQRES 10 B 380 GLY TYR CYS ALA MET SER ALA ALA LEU ILE ARG ALA PHE SEQRES 11 B 380 LYS SER THR THR ASN VAL SER MET LEU ALA ARG LEU GLY SEQRES 12 B 380 SER GLY SER ALA CYS ARG SER ALA PHE GLY GLY PHE VAL SEQRES 13 B 380 ILE TRP ASN LYS GLY GLU LYS PRO ASP GLY SER ASP CYS SEQRES 14 B 380 VAL ALA THR GLN PHE VAL ASP GLU THR HIS TRP PRO GLU SEQRES 15 B 380 ILE GLN VAL MET CYS ALA VAL LEU LYS GLY ALA GLN LYS SEQRES 16 B 380 ASP VAL SER SER THR LYS GLY MET GLN GLN SER LEU LYS SEQRES 17 B 380 THR SER PRO LEU MET LYS LYS ARG ILE SER GLU THR VAL SEQRES 18 B 380 PRO GLU ARG MET LYS ILE ALA SER ARG ALA ILE LYS ALA SEQRES 19 B 380 ARG ASP PHE ALA THR PHE ALA GLU ILE ALA MET LEU GLU SEQRES 20 B 380 SER ASP ASP LEU GLN GLU ILE CYS ALA THR THR GLU PRO SEQRES 21 B 380 LYS ILE THR TYR ALA THR GLU ASP SER TYR ALA MET ILE SEQRES 22 B 380 ARG LEU VAL LYS ALA TYR ASN ALA LYS LYS GLY ARG THR SEQRES 23 B 380 ALA LEU ALA TYR THR PHE ASP ALA GLY ALA ASN CYS PHE SEQRES 24 B 380 LEU PHE VAL LEU LYS GLU ASP LEU PRO GLU ALA VAL ALA SEQRES 25 B 380 MET LEU MET GLU HIS PHE PRO THR PRO PHE GLU LYS PHE SEQRES 26 B 380 PHE PHE GLY ASP ARG GLU LEU LEU GLU LYS VAL LYS VAL SEQRES 27 B 380 VAL SER LEU PRO ASP GLU TYR LYS LYS LEU ILE ASP HIS SEQRES 28 B 380 PRO LYS LYS PRO PHE GLU MET LEU LEU GLN SER PRO VAL SEQRES 29 B 380 GLY CYS GLY VAL LYS TYR LEU GLY PRO SER GLU SER LEU SEQRES 30 B 380 ILE PRO PRO HET SO4 A 381 5 HET SO4 A 382 5 HET SO4 A 383 5 HET SO4 B 381 5 HET SO4 B 382 5 HET SO4 B 383 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 6(O4 S 2-) FORMUL 9 HOH *712(H2 O) HELIX 1 1 ASP A 71 LYS A 74 5 4 HELIX 2 2 THR A 75 SER A 87 1 13 HELIX 3 3 PRO A 90 ASN A 95 1 6 HELIX 4 4 ALA A 113 LYS A 131 1 19 HELIX 5 5 ASN A 135 SER A 144 1 10 HELIX 6 6 GLY A 145 PHE A 152 5 8 HELIX 7 7 SER A 198 SER A 210 1 13 HELIX 8 8 LEU A 212 GLU A 219 1 8 HELIX 9 9 GLU A 219 ARG A 235 1 17 HELIX 10 10 ASP A 236 THR A 257 1 22 HELIX 11 11 THR A 266 GLY A 284 1 19 HELIX 12 12 ASP A 306 PHE A 318 1 13 HELIX 13 13 PRO A 321 GLU A 323 5 3 HELIX 14 14 ASP A 329 VAL A 339 1 11 HELIX 15 15 PRO A 342 LYS A 346 5 5 HELIX 16 16 GLY A 372 SER A 376 5 5 HELIX 17 17 ASP B 71 LYS B 74 5 4 HELIX 18 18 THR B 75 SER B 87 1 13 HELIX 19 19 SER B 114 PHE B 130 1 17 HELIX 20 20 ASN B 135 SER B 144 1 10 HELIX 21 21 GLY B 145 SER B 150 5 6 HELIX 22 22 SER B 198 SER B 210 1 13 HELIX 23 23 LEU B 212 GLU B 219 1 8 HELIX 24 24 GLU B 219 ARG B 235 1 17 HELIX 25 25 ASP B 236 THR B 257 1 22 HELIX 26 26 THR B 266 GLY B 284 1 19 HELIX 27 27 ASP B 306 PHE B 318 1 13 HELIX 28 28 PRO B 321 GLU B 323 5 3 HELIX 29 29 ASP B 329 VAL B 339 1 11 HELIX 30 30 PRO B 342 LYS B 346 5 5 HELIX 31 31 GLY B 372 SER B 376 5 5 SHEET 1 A 6 THR A 68 VAL A 70 0 SHEET 2 A 6 THR A 62 LEU A 65 -1 N LEU A 63 O VAL A 70 SHEET 3 A 6 LYS A 97 ASN A 104 1 O SER A 102 N ARG A 64 SHEET 4 A 6 SER A 48 ARG A 55 -1 N ARG A 55 O LYS A 97 SHEET 5 A 6 CYS A 5 ALA A 10 -1 N VAL A 6 O VAL A 52 SHEET 6 A 6 LYS A 369 LEU A 371 -1 O LEU A 371 N THR A 7 SHEET 1 B 4 ASN A 13 ILE A 17 0 SHEET 2 B 4 SER A 36 THR A 40 -1 O PHE A 37 N PHE A 16 SHEET 3 B 4 PHE A 155 ASN A 159 -1 O VAL A 156 N SER A 38 SHEET 4 B 4 VAL A 170 VAL A 175 -1 O PHE A 174 N PHE A 155 SHEET 1 C 5 LEU A 288 THR A 291 0 SHEET 2 C 5 CYS A 298 LEU A 303 -1 O PHE A 299 N THR A 291 SHEET 3 C 5 ILE A 183 VAL A 189 -1 N ALA A 188 O CYS A 298 SHEET 4 C 5 MET A 358 PRO A 363 -1 O SER A 362 N VAL A 185 SHEET 5 C 5 PHE A 325 PHE A 327 1 N PHE A 326 O LEU A 359 SHEET 1 D 6 THR B 68 VAL B 70 0 SHEET 2 D 6 THR B 62 LEU B 65 -1 N LEU B 63 O VAL B 70 SHEET 3 D 6 LYS B 97 ASN B 104 1 O ILE B 100 N THR B 62 SHEET 4 D 6 SER B 48 ARG B 55 -1 N ARG B 55 O LYS B 97 SHEET 5 D 6 VAL B 6 ALA B 10 -1 N VAL B 8 O THR B 50 SHEET 6 D 6 LYS B 369 LEU B 371 -1 O LYS B 369 N GLU B 9 SHEET 1 E 4 ASN B 13 ILE B 17 0 SHEET 2 E 4 SER B 36 THR B 40 -1 O PHE B 37 N PHE B 16 SHEET 3 E 4 PHE B 155 ASN B 159 -1 O VAL B 156 N SER B 38 SHEET 4 E 4 VAL B 170 VAL B 175 -1 O VAL B 170 N ASN B 159 SHEET 1 F 5 LEU B 288 THR B 291 0 SHEET 2 F 5 CYS B 298 LEU B 303 -1 O PHE B 299 N THR B 291 SHEET 3 F 5 ILE B 183 VAL B 189 -1 N GLN B 184 O VAL B 302 SHEET 4 F 5 MET B 358 PRO B 363 -1 O SER B 362 N VAL B 185 SHEET 5 F 5 PHE B 325 PHE B 327 1 N PHE B 326 O LEU B 359 CISPEP 1 SER A 44 PRO A 45 0 7.65 CISPEP 2 GLU A 259 PRO A 260 0 -4.28 CISPEP 3 SER B 44 PRO B 45 0 11.99 CISPEP 4 GLU B 259 PRO B 260 0 -1.18 SITE 1 AC1 9 TYR A 19 LYS A 22 ILE A 30 ARG A 77 SITE 2 AC1 9 SER A 144 GLY A 145 THR A 200 HOH A 423 SITE 3 AC1 9 HOH A 641 SITE 1 AC2 8 TYR B 19 LYS B 22 ILE B 30 ARG B 77 SITE 2 AC2 8 SER B 144 GLY B 145 THR B 200 HOH B 464 SITE 1 AC3 7 ARG A 274 ILE A 349 ASP A 350 HOH A 610 SITE 2 AC3 7 HOH A 710 HOH A 746 HOH A 777 SITE 1 AC4 7 SER A 42 ALA A 43 GLY A 365 CYS A 366 SITE 2 AC4 7 HOH A 385 HOH A 657 HOH A 694 SITE 1 AC5 3 ARG B 274 ILE B 349 ASP B 350 SITE 1 AC6 5 SER B 42 ALA B 43 GLY B 365 CYS B 366 SITE 2 AC6 5 HOH B 509 CRYST1 51.463 168.666 54.850 90.00 118.78 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019431 0.000000 0.010674 0.00000 SCALE2 0.000000 0.005929 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020801 0.00000