HEADER OXIDOREDUCTASE 04-JUL-06 2HKI TITLE CRYSTAL STRUCTURE OF PHOTOSYNTHETIC GLYCERALDEHYDE-3-PHOSPHATE TITLE 2 DEHYDROGENASE A4 ISOFORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE A, CHLOROPLAST; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NADP-DEPENDENT GLYCERALDEHYDEPHOSPHATE DEHYDROGENASE SUBUNIT COMPND 5 A; COMPND 6 EC: 1.2.1.13 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPINACIA OLERACEA; SOURCE 3 ORGANISM_COMMON: SPINACH; SOURCE 4 ORGANISM_TAXID: 3562 KEYWDS ROSSMANN FOLD, APO-FORM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CAMARA-ARTIGAS REVDAT 4 30-AUG-23 2HKI 1 REMARK REVDAT 3 13-JUL-11 2HKI 1 VERSN REVDAT 2 24-FEB-09 2HKI 1 VERSN REVDAT 1 14-NOV-06 2HKI 0 JRNL AUTH A.CAMARA-ARTIGAS,M.HIRASAWA,D.B.KNAFF,M.WANG,J.P.ALLEN JRNL TITL CRYSTALLIZATION AND STRUCTURAL ANALYSIS OF GADPH FROM JRNL TITL 2 SPINACIA OLERACEA IN A NEW FORM. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 62 1087 2006 JRNL REFN ESSN 1744-3091 JRNL PMID 17077485 JRNL DOI 10.1107/S174430910604200X REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 11522 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 576 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 822 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.2300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2529 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 80.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.82000 REMARK 3 B22 (A**2) : -0.82000 REMARK 3 B33 (A**2) : 1.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.888 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.382 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.310 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 36.468 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2587 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3516 ; 1.472 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 334 ; 7.110 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;41.016 ;24.510 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 439 ;18.855 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;14.590 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 416 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1900 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1171 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1762 ; 0.315 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 82 ; 0.126 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 81 ; 0.215 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.163 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1685 ; 0.468 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2680 ; 0.867 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 999 ; 1.074 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 836 ; 1.698 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HKI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038450. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JAN-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.008 REMARK 200 MONOCHROMATOR : CYCLINDRICALLY BENT TRIANGULAR REMARK 200 SI(111)ASYMMETRIC CUT,HORIZONTAL REMARK 200 FOCUS REMARK 200 OPTICS : 58 CM LONG, PT-COATED,FUSED REMARK 200 SILICA, VERTICAL FOCUSMIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12035 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.42800 REMARK 200 R SYM FOR SHELL (I) : 0.45800 REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1RM4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2-5 % PEG 10,000, 0.4-0.6 M LITHIUM REMARK 280 SULPHATE OR 0.8-1 M SODIUM CHLORIDE, PH 8.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 60.40250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 60.40250 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.82500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 60.40250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.91250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 60.40250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 119.73750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 60.40250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 119.73750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.40250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.91250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 60.40250 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 60.40250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 79.82500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 60.40250 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 60.40250 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 79.82500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 60.40250 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 119.73750 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 60.40250 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 39.91250 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 60.40250 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 39.91250 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 60.40250 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 119.73750 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 60.40250 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 60.40250 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 79.82500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 17540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -320.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 336 REMARK 465 ALA A 337 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 24 -78.94 -48.10 REMARK 500 ASP A 70 75.30 33.28 REMARK 500 LYS A 72 102.15 -46.58 REMARK 500 SER A 78 68.06 -150.47 REMARK 500 LEU A 85 132.32 -23.62 REMARK 500 PRO A 86 49.17 -78.64 REMARK 500 ASP A 128 -9.88 69.63 REMARK 500 ALA A 151 -170.40 66.59 REMARK 500 THR A 179 109.32 -52.96 REMARK 500 ALA A 201 117.66 -34.16 REMARK 500 VAL A 240 114.58 83.18 REMARK 500 ASN A 268 -100.36 -124.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 205 ILE A 206 144.24 REMARK 500 MET A 303 GLY A 304 69.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 504 REMARK 999 REMARK 999 SEQUENCE REMARK 999 UNP ENTRY G3PA_SPIOL DESCRIBES A GLN TO GLN-ALA REMARK 999 CONFLICT IN THE FEATURES SECTION. DBREF 2HKI A 1 336 UNP P19866 G3PA_SPIOL 66 401 SEQADV 2HKI ALA A 337 UNP P19866 SEE REMARK 999 SEQRES 1 A 337 LYS LEU LYS VAL ALA ILE ASN GLY PHE GLY ARG ILE GLY SEQRES 2 A 337 ARG ASN PHE LEU ARG CYS TRP HIS GLY ARG LYS ASP SER SEQRES 3 A 337 PRO LEU ASP VAL VAL VAL ILE ASN ASP THR GLY GLY VAL SEQRES 4 A 337 LYS GLN ALA SER HIS LEU LEU LYS TYR ASP SER ILE LEU SEQRES 5 A 337 GLY THR PHE ASP ALA ASP VAL LYS THR ALA GLY ASP SER SEQRES 6 A 337 ALA ILE SER VAL ASP GLY LYS VAL ILE LYS VAL VAL SER SEQRES 7 A 337 ASP ARG ASN PRO VAL ASN LEU PRO TRP GLY ASP MET GLY SEQRES 8 A 337 ILE ASP LEU VAL ILE GLU GLY THR GLY VAL PHE VAL ASP SEQRES 9 A 337 ARG ASP GLY ALA GLY LYS HIS LEU GLN ALA GLY ALA LYS SEQRES 10 A 337 LYS VAL LEU ILE THR ALA PRO GLY LYS GLY ASP ILE PRO SEQRES 11 A 337 THR TYR VAL VAL GLY VAL ASN GLU GLU GLY TYR THR HIS SEQRES 12 A 337 ALA ASP THR ILE ILE SER ASN ALA SER CYS THR THR ASN SEQRES 13 A 337 CYS LEU ALA PRO PHE VAL LYS VAL LEU ASP GLN LYS PHE SEQRES 14 A 337 GLY ILE ILE LYS GLY THR MET THR THR THR HIS SER TYR SEQRES 15 A 337 THR GLY ASP GLN ARG LEU LEU ASP ALA SER HIS ARG ASP SEQRES 16 A 337 LEU ARG ARG ALA ARG ALA ALA CYS LEU ASN ILE VAL PRO SEQRES 17 A 337 THR SER THR GLY ALA ALA LYS ALA VAL ALA LEU VAL LEU SEQRES 18 A 337 PRO ASN LEU LYS GLY LYS LEU ASN GLY ILE ALA LEU ARG SEQRES 19 A 337 VAL PRO THR PRO ASN VAL SER VAL VAL ASP LEU VAL VAL SEQRES 20 A 337 GLN VAL SER LYS LYS THR PHE ALA GLU GLU VAL ASN ALA SEQRES 21 A 337 ALA PHE ARG GLU SER ALA ASP ASN GLU LEU LYS GLY ILE SEQRES 22 A 337 LEU SER VAL CYS ASP GLU PRO LEU VAL SER ILE ASP PHE SEQRES 23 A 337 ARG CYS THR ASP VAL SER SER THR ILE ASP SER SER LEU SEQRES 24 A 337 THR MET VAL MET GLY ASP ASP MET VAL LYS VAL ILE ALA SEQRES 25 A 337 TRP TYR ASP ASN GLU TRP GLY TYR SER GLN ARG VAL VAL SEQRES 26 A 337 ASP LEU ALA ASP ILE VAL ALA ASN LYS TRP GLN ALA HET SO4 A 501 5 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 4(O4 S 2-) HELIX 1 1 GLY A 10 GLY A 22 1 13 HELIX 2 2 GLY A 38 TYR A 48 1 11 HELIX 3 3 PRO A 86 GLY A 91 1 6 HELIX 4 4 GLY A 107 LEU A 112 5 6 HELIX 5 5 ASN A 137 TYR A 141 5 5 HELIX 6 6 SER A 152 PHE A 169 1 18 HELIX 7 7 GLY A 212 LEU A 221 1 10 HELIX 8 8 PRO A 222 LYS A 225 5 4 HELIX 9 9 PHE A 254 ASP A 267 1 14 HELIX 10 10 VAL A 282 PHE A 286 5 5 HELIX 11 11 SER A 298 THR A 300 5 3 HELIX 12 12 GLU A 317 LYS A 334 1 18 SHEET 1 A 8 VAL A 59 THR A 61 0 SHEET 2 A 8 ALA A 66 VAL A 69 -1 O SER A 68 N LYS A 60 SHEET 3 A 8 LYS A 72 VAL A 77 -1 O ILE A 74 N ILE A 67 SHEET 4 A 8 LEU A 28 ASN A 34 1 N VAL A 31 O LYS A 75 SHEET 5 A 8 LEU A 2 ASN A 7 1 N ILE A 6 O ASN A 34 SHEET 6 A 8 LEU A 94 GLU A 97 1 O ILE A 96 N ALA A 5 SHEET 7 A 8 LYS A 118 ILE A 121 1 O LEU A 120 N GLU A 97 SHEET 8 A 8 ILE A 147 SER A 149 1 O ILE A 148 N ILE A 121 SHEET 1 B 7 VAL A 207 THR A 209 0 SHEET 2 B 7 LEU A 228 VAL A 235 -1 O ARG A 234 N VAL A 207 SHEET 3 B 7 ILE A 171 SER A 181 1 N HIS A 180 O VAL A 235 SHEET 4 B 7 SER A 241 VAL A 249 -1 O VAL A 242 N THR A 179 SHEET 5 B 7 MET A 307 TYR A 314 -1 O TYR A 314 N SER A 241 SHEET 6 B 7 SER A 293 ASP A 296 -1 N ASP A 296 O ILE A 311 SHEET 7 B 7 LEU A 274 CYS A 277 1 N CYS A 277 O ILE A 295 SHEET 1 C 6 VAL A 207 THR A 209 0 SHEET 2 C 6 LEU A 228 VAL A 235 -1 O ARG A 234 N VAL A 207 SHEET 3 C 6 ILE A 171 SER A 181 1 N HIS A 180 O VAL A 235 SHEET 4 C 6 SER A 241 VAL A 249 -1 O VAL A 242 N THR A 179 SHEET 5 C 6 MET A 307 TYR A 314 -1 O TYR A 314 N SER A 241 SHEET 6 C 6 MET A 301 VAL A 302 -1 N MET A 301 O LYS A 309 CISPEP 1 GLY A 304 ASP A 305 0 29.16 SITE 1 AC1 5 SER A 152 THR A 154 THR A 211 GLY A 212 SITE 2 AC1 5 ALA A 213 SITE 1 AC2 4 THR A 183 ASP A 185 ARG A 198 ARG A 234 SITE 1 AC3 3 ARG A 187 SER A 192 SO4 A 504 SITE 1 AC4 4 GLY A 10 ARG A 11 ILE A 12 SO4 A 503 CRYST1 120.805 120.805 159.650 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008278 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008278 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006264 0.00000