HEADER TRANSCRIPTION REGULATOR 05-JUL-06 2HKU TITLE STRUCTURAL GENOMICS, THE CRYSTAL STRUCTURE OF A PUTATIVE TITLE 2 TRANSCRIPTIONAL REGULATOR FROM RHODOCOCCUS SP. RHA1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: A PUTATIVE TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS SP.; SOURCE 3 ORGANISM_TAXID: 101510; SOURCE 4 STRAIN: RHA1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS STRUCTURAL GENOMICS, APC6040, TRANSCRIPTIONAL REGULATOR, TETR FAMILY, KEYWDS 2 RHODOCOCCUS SP. RHA1, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, MCSG, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,E.EVDOKIMOVA,O.KAGAN,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 20-NOV-24 2HKU 1 REMARK LINK REVDAT 3 13-JUL-11 2HKU 1 VERSN REVDAT 2 24-FEB-09 2HKU 1 VERSN REVDAT 1 08-AUG-06 2HKU 0 JRNL AUTH K.TAN,E.EVDOKIMOVA,O.KAGAN,A.SAVCHENKO,A.EDWARDS, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A TRANSCRIPTIONAL REGULATOR FROM JRNL TITL 2 RHODOCOCCUS SP. RHA1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 28056 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1500 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2017 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2852 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.187 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.744 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2930 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3957 ; 2.131 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 373 ;10.375 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;35.043 ;23.167 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 477 ;18.729 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;19.341 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 470 ; 0.181 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2153 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1454 ; 0.238 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2056 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 170 ; 0.162 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 54 ; 0.243 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.160 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1918 ; 1.488 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2973 ; 2.295 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1152 ; 3.519 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 984 ; 5.286 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HKU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038461. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97883 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKLSBC REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29578 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKLSBC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG2000 MME, 0.2M AMMONIUM REMARK 280 SULPHATE, 0.1M TRIS, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.92000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.92000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.20000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.85050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 47.20000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.85050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.92000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.20000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.85050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.92000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 47.20000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.85050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE MOLECULE IS IN DIMERIC FORM AS THE DIMER FROMED BY A REMARK 300 AND B CHAINS IN THE STRUCTURE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 VAL A 2 REMARK 465 PRO A 3 REMARK 465 GLN A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 ARG A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 ARG A 10 REMARK 465 ALA A 11 REMARK 465 THR A 12 REMARK 465 ARG A 13 REMARK 465 GLU A 14 REMARK 465 SER A 15 REMARK 465 GLY A 16 REMARK 465 ARG A 17 REMARK 465 SER A 209 REMARK 465 ILE A 210 REMARK 465 ASP A 211 REMARK 465 GLY A 212 REMARK 465 SER A 213 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 1 REMARK 465 VAL B 2 REMARK 465 PRO B 3 REMARK 465 GLN B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 ARG B 7 REMARK 465 ALA B 8 REMARK 465 ALA B 9 REMARK 465 ARG B 10 REMARK 465 ALA B 11 REMARK 465 THR B 12 REMARK 465 ARG B 13 REMARK 465 GLU B 14 REMARK 465 SER B 15 REMARK 465 GLY B 16 REMARK 465 ARG B 17 REMARK 465 GLN B 18 REMARK 465 THR B 180 REMARK 465 GLY B 181 REMARK 465 GLU B 182 REMARK 465 SER B 183 REMARK 465 PHE B 184 REMARK 465 GLY B 185 REMARK 465 TYR B 186 REMARK 465 ASP B 211 REMARK 465 GLY B 212 REMARK 465 SER B 213 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA B 80 CA ALA B 80 CB 0.142 REMARK 500 PHE B 166 CE2 PHE B 166 CD2 0.156 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 125 N - CA - C ANGL. DEV. = -19.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 60 160.10 176.70 REMARK 500 THR A 86 36.36 -96.30 REMARK 500 GLU A 88 132.56 -34.25 REMARK 500 ALA A 143 -87.18 -103.79 REMARK 500 ARG B 20 -32.63 -31.44 REMARK 500 THR B 119 -34.99 -37.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 86 ALA A 87 103.64 REMARK 500 ALA A 87 GLU A 88 130.74 REMARK 500 GLU A 124 LEU A 125 -109.17 REMARK 500 THR B 19 ARG B 20 146.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC6040 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THE PROTEIN WAS NOT AVAILABLE REMARK 999 AT ANY SEQUENCE DATABASE AT THE TIME OF PROCESSING. DBREF 2HKU A 1 211 UNP Q0SB15 Q0SB15_RHOSR 1 211 DBREF 2HKU B 1 211 UNP Q0SB15 Q0SB15_RHOSR 1 211 SEQRES 1 A 215 GLY HIS MSE VAL PRO GLN THR GLY ARG ALA ALA ARG ALA SEQRES 2 A 215 THR ARG GLU SER GLY ARG GLN THR ARG ASP ALA LEU PHE SEQRES 3 A 215 THR ALA ALA THR GLU LEU PHE LEU GLU HIS GLY GLU GLY SEQRES 4 A 215 VAL PRO ILE THR GLN ILE CYS ALA ALA ALA GLY ALA HIS SEQRES 5 A 215 PRO ASN GLN VAL THR TYR TYR TYR GLY SER LYS GLU ARG SEQRES 6 A 215 LEU PHE VAL GLU VAL ALA CYS ALA ALA VAL LEU ARG ALA SEQRES 7 A 215 GLY LYS ARG ALA GLU ASP ASP ALA ALA THR ALA GLU THR SEQRES 8 A 215 VAL GLY ASP TYR THR GLU LYS LEU VAL GLY SER LEU LEU SEQRES 9 A 215 GLY PRO GLY ALA PRO SER VAL GLU LEU PHE THR SER ALA SEQRES 10 A 215 MSE LEU MSE THR GLY ARG ARG SER GLU LEU ARG ASP LEU SEQRES 11 A 215 ILE THR ASP THR LEU ARG THR LEU HIS SER SER GLY GLU SEQRES 12 A 215 VAL ALA LEU ILE ARG THR LEU MSE ARG THR GLY TRP GLN SEQRES 13 A 215 LEU ARG ALA GLY ILE ASP VAL GLU SER LYS ALA PHE TRP SEQRES 14 A 215 SER ALA ILE PHE GLY LEU VAL ILE GLN LYS THR ALA THR SEQRES 15 A 215 GLY GLU SER PHE GLY TYR SER LEU GLU GLU ALA VAL ALA SEQRES 16 A 215 VAL ILE PHE ALA ASN LEU GLN ILE PRO GLU THR VAL ARG SEQRES 17 A 215 ASN THR SER ILE ASP GLY SER SEQRES 1 B 215 GLY HIS MSE VAL PRO GLN THR GLY ARG ALA ALA ARG ALA SEQRES 2 B 215 THR ARG GLU SER GLY ARG GLN THR ARG ASP ALA LEU PHE SEQRES 3 B 215 THR ALA ALA THR GLU LEU PHE LEU GLU HIS GLY GLU GLY SEQRES 4 B 215 VAL PRO ILE THR GLN ILE CYS ALA ALA ALA GLY ALA HIS SEQRES 5 B 215 PRO ASN GLN VAL THR TYR TYR TYR GLY SER LYS GLU ARG SEQRES 6 B 215 LEU PHE VAL GLU VAL ALA CYS ALA ALA VAL LEU ARG ALA SEQRES 7 B 215 GLY LYS ARG ALA GLU ASP ASP ALA ALA THR ALA GLU THR SEQRES 8 B 215 VAL GLY ASP TYR THR GLU LYS LEU VAL GLY SER LEU LEU SEQRES 9 B 215 GLY PRO GLY ALA PRO SER VAL GLU LEU PHE THR SER ALA SEQRES 10 B 215 MSE LEU MSE THR GLY ARG ARG SER GLU LEU ARG ASP LEU SEQRES 11 B 215 ILE THR ASP THR LEU ARG THR LEU HIS SER SER GLY GLU SEQRES 12 B 215 VAL ALA LEU ILE ARG THR LEU MSE ARG THR GLY TRP GLN SEQRES 13 B 215 LEU ARG ALA GLY ILE ASP VAL GLU SER LYS ALA PHE TRP SEQRES 14 B 215 SER ALA ILE PHE GLY LEU VAL ILE GLN LYS THR ALA THR SEQRES 15 B 215 GLY GLU SER PHE GLY TYR SER LEU GLU GLU ALA VAL ALA SEQRES 16 B 215 VAL ILE PHE ALA ASN LEU GLN ILE PRO GLU THR VAL ARG SEQRES 17 B 215 ASN THR SER ILE ASP GLY SER MODRES 2HKU MSE A 116 MET SELENOMETHIONINE MODRES 2HKU MSE A 118 MET SELENOMETHIONINE MODRES 2HKU MSE A 149 MET SELENOMETHIONINE MODRES 2HKU MSE B 116 MET SELENOMETHIONINE MODRES 2HKU MSE B 118 MET SELENOMETHIONINE MODRES 2HKU MSE B 149 MET SELENOMETHIONINE HET MSE A 116 8 HET MSE A 118 8 HET MSE A 149 8 HET MSE B 116 8 HET MSE B 118 8 HET MSE B 149 8 HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET PG4 B 214 13 HET EDO B 307 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 EDO 7(C2 H6 O2) FORMUL 9 PG4 C8 H18 O5 FORMUL 11 HOH *144(H2 O) HELIX 1 1 GLN A 18 GLY A 35 1 18 HELIX 2 2 PRO A 39 GLY A 48 1 10 HELIX 3 3 HIS A 50 GLY A 59 1 10 HELIX 4 4 SER A 60 THR A 86 1 27 HELIX 5 5 THR A 89 GLY A 103 1 15 HELIX 6 6 GLY A 105 THR A 119 1 15 HELIX 7 7 ARG A 122 ALA A 143 1 22 HELIX 8 8 ALA A 143 THR A 151 1 9 HELIX 9 9 GLY A 158 THR A 180 1 23 HELIX 10 10 SER A 187 GLN A 200 1 14 HELIX 11 11 PRO A 202 THR A 208 1 7 HELIX 12 12 THR B 19 GLY B 35 1 17 HELIX 13 13 PRO B 39 GLY B 48 1 10 HELIX 14 14 PRO B 51 GLY B 59 1 9 HELIX 15 15 SER B 60 ALA B 85 1 26 HELIX 16 16 THR B 89 GLY B 103 1 15 HELIX 17 17 GLY B 105 THR B 119 1 15 HELIX 18 18 ARG B 122 MSE B 149 1 28 HELIX 19 19 GLY B 158 THR B 178 1 21 HELIX 20 20 SER B 187 LEU B 199 1 13 HELIX 21 21 PRO B 202 THR B 208 1 7 LINK C ALA A 115 N MSE A 116 1555 1555 1.34 LINK C MSE A 116 N LEU A 117 1555 1555 1.32 LINK C LEU A 117 N MSE A 118 1555 1555 1.33 LINK C MSE A 118 N THR A 119 1555 1555 1.33 LINK C LEU A 148 N MSE A 149 1555 1555 1.33 LINK C MSE A 149 N ARG A 150 1555 1555 1.33 LINK C ALA B 115 N MSE B 116 1555 1555 1.33 LINK C MSE B 116 N LEU B 117 1555 1555 1.33 LINK C LEU B 117 N MSE B 118 1555 1555 1.30 LINK C MSE B 118 N THR B 119 1555 1555 1.33 LINK C LEU B 148 N MSE B 149 1555 1555 1.34 LINK C MSE B 149 N ARG B 150 1555 1555 1.34 CISPEP 1 GLU A 88 THR A 89 0 22.49 SITE 1 AC1 9 ARG A 146 LEU B 74 GLY B 77 LYS B 78 SITE 2 AC1 9 LEU B 97 SER B 139 GLY B 140 LEU B 144 SITE 3 AC1 9 PHE B 166 SITE 1 AC2 4 PHE A 184 TYR A 186 HIS B 137 HOH B 330 SITE 1 AC3 7 GLU A 81 LEU A 97 SER A 139 GLY A 140 SITE 2 AC3 7 ALA A 143 LEU A 144 TRP A 167 SITE 1 AC4 1 ARG A 156 SITE 1 AC5 5 GLU A 189 ALA A 193 PHE A 196 HOH A 361 SITE 2 AC5 5 HOH A 367 SITE 1 AC6 1 GLU A 88 SITE 1 AC7 5 SER A 114 HOH A 381 GLU B 36 SER B 114 SITE 2 AC7 5 MSE B 118 SITE 1 AC8 4 PRO B 39 ILE B 40 LYS B 61 HOH B 334 CRYST1 94.400 123.701 73.840 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010593 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008084 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013543 0.00000